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Domain combinations for mu transposase, C-terminal domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a mu transposase, C-terminal domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Lucilia_cuprina   (Australian sheep blowfly)   1 1
Microcoleus_sp._PCC_7113 2 2
Geitlerinema_sp._PCC_7407 2 2
Cyanothece_sp._PCC_8802 2 2
Rivularia_sp._PCC_7116 1 1
Anabaena_variabilis_ATCC_29413 3 3
Nostoc_sp._PCC_7107 1 1
Nostoc_punctiforme_PCC_73102 1 1
Nostoc_sp._PCC_7120 1 1
Microlunatus_phosphovorus_NM-1 1 1
Actinoplanes_sp._N902-109 1 1
Gordonia_polyisoprenivorans_VH2 1 1
[Cellvibrio]_gilvus_ATCC_13127 2 2
Arthrobacter_phenanthrenivorans_Sphe3 1 1
Arthrobacter_sp._FB24 1 1
Ethanoligenens_harbinense_YUAN-3 2 2
Pelotomaculum_thermopropionicum_SI 1 1
Syntrophobotulus_glycolicus_DSM_8271 5 5
Desulfotomaculum_acetoxidans_DSM_771 1 1
Desulfotomaculum_ruminis_DSM_2154 1 1
Roseburia_intestinalis 1 1
Alkaliphilus_metalliredigens_QYMF 1 1
Listeria_innocua_Clip11262 1 1
Staphylococcus_pseudintermedius_HKU10-03 1 1
Staphylococcus_lugdunensis_HKU09-01 2 2
Staphylococcus_haemolyticus_JCSC1435 2 2
Staphylococcus_aureus_subsp._aureus_JH1 1 1
Candidatus_Cloacamonas_acidaminovorans 2 2
Ignavibacterium_album_JCM_16511 1 1
Sulfurihydrogenibium_sp._YO3AOP1 1 1
Granulicella_tundricola_MP5ACTX9 1 1
Candidatus_Koribacter_versatilis_Ellin345 1 1
Ilyobacter_polytropus_DSM_2926 1 1
Syntrophus_aciditrophicus_SB 1 1
Desulfobulbus_propionicus_DSM_2032 1 1
Desulfatibacillum_alkenivorans_AK-01 2 2
Desulfovibrio_magneticus_RS-1 1 1
Desulfovibrio_alaskensis_G20 1 1
Desulfovibrio_africanus_str._Walvis_Bay 1 1
Pelobacter_propionicus_DSM_2379 1 1
Dechlorosoma_suillum_PS 1 1
Pseudogulbenkiania_sp._NH8B 2 2
Laribacter_hongkongensis_HLHK9 1 1
Neisseria_meningitidis_FAM18 1 1
Rubrivivax_gelatinosus_IL144 1 1
Burkholderia_vietnamiensis_G4 2 2
Burkholderia_glumae_BGR1 1 1
Polaromonas_naphthalenivorans_CJ2 1 1
Acidovorax_sp._JS42 4 4
Acidovorax_citrulli_AAC00-1 2 2
Bordetella_petrii_DSM_12804 1 1
Sideroxydans_lithotrophicus_ES-1 1 1
Caulobacter_sp._K31 1 1
Sphingobium_sp._SYK-6 1 1
Sphingobium_japonicum_UT26S 1 1
Sphingomonas_sp._MM-1 1 1
Dinoroseobacter_shibae_DFL_12 3 3
Jannaschia_sp._CCS1 1 1
Rhodobacter_capsulatus_SB_1003 1 1
Rhodospirillum_photometricum_DSM_122 1 1
Tistrella_mobilis_KA081020-065 1 1
Magnetospirillum_magneticum_AMB-1 1 1
Rhodospirillum_centenum_SW 1 1
Azospirillum_brasilense_Sp245 1 1
Acetobacter_pasteurianus_IFO_3283-01 2 2
Xanthobacter_autotrophicus_Py2 1 1
Rhizobium_leguminosarum_bv._viciae_3841 1 1
Agrobacterium_vitis_S4 2 2
Mesorhizobium_sp._BNC1 4 4
Mesorhizobium_loti_MAFF303099 1 1
Nitrobacter_hamburgensis_X14 2 2
Bartonella_tribocorum_CIP_105476 4 4
Gallibacterium_anatis_UMN179 1 1
Vibrio_cholerae_O395 2 2
Shewanella_oneidensis_MR-1 1 1
Pseudoalteromonas_haloplanktis_TAC125 1 1
Rhodanobacter_denitrificans 1 1
Thioalkalivibrio_sulfidophilus_HL-EbGr7 2 2
Thiocystis_violascens_DSM_198 1 1
Escherichia_blattae_DSM_4481 1 1
Shigella_flexneri_5_str._8401 3 3
Citrobacter_rodentium_ICC168 2 2
Pseudomonas_sp._TKP 1 1

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Strains
Genome     Number   Proteins
Chamaesiphon_minutus_PCC_6605 2 2
Crinalium_epipsammum_PCC_9333 1 1
Oscillatoria_acuminata_PCC_6304 1 1
Cyanothece_sp._PCC_7822 3 3
Cyanothece_sp._PCC_7424 2 2
Cyanothece_sp._ATCC_51142 1 1
Cyanothece_sp._PCC_8801 2 2
Stanieria_cyanosphaera_PCC_7437 1 1
Calothrix_parietina_Calothrix_sp._PCC_6303 1 1
Anabaena_cylindrica_PCC_7122 2 2
Streptomyces_collinus_Tu_365 2 2
Propionibacterium_acidipropionici_ATCC_4875 1 1
Sulfobacillus_acidophilus_TPY 1 1
Bacillus_cereus_AH820 1 1
Bacillus_cereus_E33L 1 1
Staphylococcus_pseudintermedius_ED99 1 1
Staphylococcus_epidermidis_ATCC_12228 1 1
Staphylococcus_aureus_CA-347 1 1
Staphylococcus_aureus_Bmb9393 2 2
Staphylococcus_aureus_subsp._aureus_Z172 1 1
Staphylococcus_aureus_subsp._aureus_11819-97 1 1
Staphylococcus_aureus_subsp._aureus_T0131 1 1
Staphylococcus_aureus_subsp._aureus_TW20 2 2
Staphylococcus_aureus_subsp._aureus_55/2053 1 1
Staphylococcus_aureus_subsp._aureus_TCH60 1 1
Staphylococcus_aureus_subsp._aureus_str._JKD6008 1 1
Staphylococcus_aureus_subsp._aureus_JH9 1 1
Staphylococcus_aureus_subsp._aureus_MRSA252 1 1
Staphylococcus_aureus_subsp._aureus_N315 1 1
Fusobacterium_nucleatum_subsp._animalis_4_8 1 1
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 2 2
Desulfovibrio_vulgaris_RCH1 2 2
Desulfovibrio_vulgaris_str._'Miyazaki_F' 2 2
Desulfovibrio_vulgaris_str._Hildenborough 2 2
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 1 1
Neisseria_meningitidis_WUE_2594 1 1
Neisseria_meningitidis_G2136 1 1
Neisseria_meningitidis_M04-240196 1 1
Neisseria_meningitidis_M01-240149 1 1
Neisseria_meningitidis_NZ-05/33 1 1
Neisseria_meningitidis_M01-240355 1 1
Neisseria_meningitidis_8013 1 1
Neisseria_meningitidis_053442 1 1
Neisseria_meningitidis_Z2491 2 2
Neisseria_meningitidis_H44/76 1 1
Neisseria_meningitidis_alpha710 1 1
Neisseria_meningitidis_MC58 1 1
Ralstonia_solanacearum_CMR15 1 1
Burkholderia_cenocepacia_J2315 1 1
Phaeobacter_gallaeciensis_DSM_26640 1 1
Leisingera_methylohalidivorans_DSM_14336 1 1
Rhodobacter_sphaeroides_ATCC_17025 3 3
Acetobacter_pasteurianus_386B 1 1
Acetobacter_pasteurianus_IFO_3283-12 2 2
Acetobacter_pasteurianus_IFO_3283-01-42C 2 2
Acetobacter_pasteurianus_IFO_3283-32 2 2
Acetobacter_pasteurianus_IFO_3283-26 2 2
Acetobacter_pasteurianus_IFO_3283-22 2 2
Acetobacter_pasteurianus_IFO_3283-07 2 2
Acetobacter_pasteurianus_IFO_3283-03 2 2
Sinorhizobium_fredii_USDA_257 1 1
Sinorhizobium_fredii_HH103 1 1
Bartonella_vinsonii_subsp._berkhoffii_str._Winnie 1 1
Bibersteinia_trehalosi_USDA-ARS-USMARC-192 1 1
Aggregatibacter_actinomycetemcomitans_D11S-1 1 1
Haemophilus_somnus_2336 2 2
Mannheimia_haemolytica_USMARC_2286 2 2
Mannheimia_haemolytica_M42548 2 2
Mannheimia_haemolytica_D174 3 3
Mannheimia_haemolytica_D171 1 1
Mannheimia_haemolytica_D153 2 2
Mannheimia_haemolytica_USDA-ARS-USMARC-183 1 1
Mannheimia_haemolytica_USDA-ARS-USMARC-185 1 1
Haemophilus_parasuis_ZJ0906 1 1
Haemophilus_influenzae_F3047 1 1
Haemophilus_influenzae_F3031 2 2
Haemophilus_influenzae_Rd_KW20 1 1
Vibrio_cholerae_O395 2 2
Shewanella_sp._W3-18-1 1 1
Shewanella_putrefaciens_200 2 2
Alteromonas_macleodii_str._'English_Channel_673' 1 1
Thalassolituus_oleivorans_MIL-1 1 1
Yersinia_pseudotuberculosis_YPIII 1 1
Shigella_sonnei_53G 1 1
Shigella_flexneri_2002017 2 2
Shigella_flexneri_2a_str._2457T 2 2
Shigella_flexneri_2a_str._301 2 2
Salmonella_bongori_N268-08 1 1
Escherichia_coli_E24377A 1 1
Escherichia_coli_LY180 1 1
Escherichia_coli_KO11FL 1 1
Escherichia_coli_KO11FL 1 1
Escherichia_coli_W 1 1
Escherichia_coli_W 1 1
Escherichia_coli_SE11 1 1
Escherichia_coli_O127:H6_str._E2348/69 1 1
Escherichia_coli_O157:H7_str._Sakai 1 1
Escherichia_coli_BW2952 1 1
Pseudomonas_denitrificans_ATCC_13867 1 1
Pseudomonas_putida_ND6 1 1
Pseudomonas_aeruginosa_LES431 1 1
Pseudomonas_aeruginosa_NCGM2.S1 1 1
Pseudomonas_aeruginosa_LESB58 1 1
Pseudomonas_aeruginosa_PA7 1 1

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Others
Genome     Number   Proteins
NCBI_plasmid_sequences_(Plasmids) 76 76
NCBI_viral_sequences_(Viral) 19 19
PDB_chains_(SCOP_1.75)_(PDB) 1 1
STRING_v9.0.5_(STRING) 110 110
Uniprot_2018_03_genome 2243 2243
NCBI_2017_08_genome 8312 8311
Protein_Data_Bank_(all_PDB_sequenc) 5 5
TargetDB__(Targets) 5 5
UniProt__viral_sequences_(Viral) 8 8
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 13 13

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