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Domain combinations for XRCC4, N-terminal domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a XRCC4, N-terminal domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   4 4
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1 1
Gorilla_gorilla_76_3.1   (Western gorilla)   1 1
Pongo_abelii_76_2   (Sumatran orangutan)   1 1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   1 1
Papio_anubis_76   (Olive baboon)   1 1
Macaca_mulatta_76_1   (Rhesus monkey)   3 3
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   3 3
Otolemur_garnettii_76_3   (Small-eared galago)   1 1
Rattus_norvegicus_76_5.0   (Norway rat)   1 1
Mus_musculus_76_38   (House mouse)   4 4
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1 1
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   1 1
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   1 1
Cavia_porcellus_76_3   (Domestic guinea pig)   1 1
Oryctolagus_cuniculus_76_2   (Rabbit)   1 1
Ochotona_princeps_76   (American pika)   1 1
Tupaia_belangeri_76   (Northern tree shrew)   1 1
Sus_scrofa_76_10.2   (Pig)   1 1
Bos_taurus_76_3.1   (Cattle)   1 1
Ovis_aries_76_3.1   (Sheep)   1 1
Vicugna_pacos_76_1   (Alpaca)   1 1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   1 1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   1 1
Canis_familiaris_76_3.1   (Dog)   2 2
Felis_catus_76_6.2   (Domestic cat)   1 1
Equus_caballus_76_2   (Horse)   1 1
Myotis_lucifugus_76_2.0   (Little brown bat)   1 1
Pteropus_vampyrus_76_1   (Large flying fox)   1 1
Sorex_araneus_76_1   (European shrew)   1 1
Erinaceus_europaeus_76   (Western European hedgehog)   1 1
Procavia_capensis_76_1   (Cape rock hyrax)   1 1
Echinops_telfairi_76   (Small Madagascar hedgehog)   1 1
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   1 1
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1 1
Macropus_eugenii_76_1.0   (Tammar wallaby)   1 1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   1 1
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   1 1
Ornithorhynchus_anatinus_76_5   (Platypus)   1 1
Saccoglossus_kowalevskii_v3.0 1 1
Gallus_gallus_76_4   (Chicken)   1 1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   2 2
Ficedula_albicollis_76_1.0   (Collared flycatcher)   1 1
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   1 1
Anolis_carolinensis_76_2.0   (Green anole)   1 1
Xenopus_laevis_   (African clawed frog)   2 2
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   1 1
Latimeria_chalumnae_76_1   (Coelacanth)   1 1
Lepisosteus_oculatus_76   (Spotted gar)   1 1
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   1 1
Takifugu_rubripes_76_4   (Torafugu)   2 2
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   2 2
Poecilia_formosa_76   (Amazon molly)   2 2
Oreochromis_niloticus_76_1.0   (Nile tilapia)   4 4
Danio_rerio_76_9   (Zebrafish)   1 1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1 1
Crassostrea_gigas_22   (Pacific oyster)   3 2
Lottia_gigantea_   (Owl limpet)   1 1
Capitella_sp._I_ 1 1
Acropora_digitifera_v1.0 1 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   1 1
Hydra_vulgaris 1 1
Trichoplax_adhaerens_ 1 1
Dictyostelium_discoideum 1 1
Dictyostelium_purpureum_ 1 1
Pinus_taeda   (Loblolly pine)   1 1
Eucalyptus_grandis_v201   (Rose gum)   1 1
Citrus_clementina_v165 2 2
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   1 1
Capsella_rubella_v183 1 1
Arabidopsis_lyrata_   (Lyrate rockcress)   1 1
Arabidopsis_thaliana_10   (Thale cress)   2 2
Carica_papaya_   (Papaya)   1 1
Medicago_truncatula_   (Barrel medic)   1 1
Fragaria_vesca_   (Wild strawberry)   1 1
Prunus_persica_v139   (Peach)   1 1
Manihot_esculenta_v147   (Cassava)   1 1
Vitis_vinifera_   (Wine grape)   1 1
Solanum_lycopersicum_v.2.3   (Tomato)   1 1
Solanum_tuberosum_   (Potato)   1 1
Aquilegia_coerulea_v195 1 1
Triticum_urartu_22 1 1
Triticum_aestivum_22   (Bread wheat)   1 1
Aegilops_tauschii_22 1 1
Brachypodium_distachyon_   (Stiff brome)   1 1
Musa_acuminata_22   (Wild Malaysian banana)   1 1
Amborella_trichopoda_22 1 1
Thecamonas_trahens_ATCC_50062_ 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   3 3

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   1 1
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1 1
Gorilla_gorilla_69_3.1   (Western gorilla)   1 1
Pongo_abelii_69_2   (Sumatran orangutan)   1 1
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   1 1
Macaca_mulatta_69_1   (Rhesus monkey)   1 1
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   1 1
Otolemur_garnettii_69_3   (Small-eared galago)   1 1
Rattus_norvegicus_69_3.4   (Norway rat)   1 1
Mus_musculus_69_38   (House mouse)   1 1
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1 1
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   1 1
Cavia_porcellus_69_3   (Domestic guinea pig)   1 1
Oryctolagus_cuniculus_69_2   (Rabbit)   1 1
Ochotona_princeps_69   (American pika)   1 1
Tupaia_belangeri_69   (Northern tree shrew)   1 1
Sus_scrofa_69_10.2   (Pig)   1 1
Bos_taurus_69_3.1   (Cattle)   1 1
Vicugna_pacos_69_1   (Alpaca)   1 1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   1 1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   1 1
Canis_familiaris_69_3.1   (Dog)   1 1
Equus_caballus_69_2   (Horse)   1 1
Myotis_lucifugus_69_2.0   (Little brown bat)   1 1
Pteropus_vampyrus_69_1   (Large flying fox)   1 1
Sorex_araneus_69_1   (European shrew)   1 1
Erinaceus_europaeus_69   (Western European hedgehog)   1 1
Procavia_capensis_69_1   (Cape rock hyrax)   1 1
Echinops_telfairi_69   (Small Madagascar hedgehog)   1 1
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1 1
Macropus_eugenii_69_1.0   (Tammar wallaby)   1 1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   1 1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   1 1
Ornithorhynchus_anatinus_69_5   (Platypus)   1 1
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   2 2
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   1 1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   1 1
Latimeria_chalumnae_69_1   (Coelacanth)   1 1
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   1 1
Takifugu_rubripes_69_4   (Torafugu)   1 1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   2 2
Oreochromis_niloticus_69_1.0   (Nile tilapia)   2 2
Danio_rerio_69_9   (Zebrafish)   1 1
Arabidopsis_thaliana_10   (Thale cress)   1 1

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   4 4
Homo_sapiens__(NCBI_version)   (Human)   3 3
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1 1
Lotus_japonicus__(Early_assembly) 1 1
Nicotiana_benthamiana_0.4.4_(Early_draft) 1 1
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1 1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1 1
PDB_chains_(SCOP_1.75)_(PDB) 2 2
STRING_v9.0.5_(STRING) 29 29
Protein_Data_Bank_(all_PDB_sequenc) 48 48
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 117 117
Uniprot_2018_03_genome 298 297
NCBI_2017_08_genome 695 695

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