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Domain combinations for WD40 repeat-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a WD40 repeat-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   1285 1206
Pan_troglodytes_76_2.1.4   (Chimpanzee)   303 268
Gorilla_gorilla_76_3.1   (Western gorilla)   412 374
Pongo_abelii_76_2   (Sumatran orangutan)   319 292
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   327 296
Papio_anubis_76   (Olive baboon)   342 306
Macaca_mulatta_76_1   (Rhesus monkey)   551 508
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   704 641
Otolemur_garnettii_76_3   (Small-eared galago)   321 286
Microcebus_murinus_76_1   (Gray mouse lemur)   255 236
Rattus_norvegicus_76_5.0   (Norway rat)   386 345
Mus_musculus_76_38   (House mouse)   747 692
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   289 250
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   310 276
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   357 328
Cavia_porcellus_76_3   (Domestic guinea pig)   314 283
Oryctolagus_cuniculus_76_2   (Rabbit)   335 296
Ochotona_princeps_76   (American pika)   255 237
Tupaia_belangeri_76   (Northern tree shrew)   246 228
Sus_scrofa_76_10.2   (Pig)   376 345
Bos_taurus_76_3.1   (Cattle)   324 290
Ovis_aries_76_3.1   (Sheep)   359 325
Vicugna_pacos_76_1   (Alpaca)   203 184
Tursiops_truncatus_76_1   (Bottlenose dolphin)   302 274
Mustela_putorius_furo_76_1.0   (Domestic ferret)   315 286
Ailuropoda_melanoleuca_76_1   (Giant panda)   360 321
Canis_familiaris_76_3.1   (Dog)   451 389
Felis_catus_76_6.2   (Domestic cat)   323 294
Equus_caballus_76_2   (Horse)   380 335
Myotis_lucifugus_76_2.0   (Little brown bat)   337 297
Pteropus_vampyrus_76_1   (Large flying fox)   304 273
Sorex_araneus_76_1   (European shrew)   222 201
Erinaceus_europaeus_76   (Western European hedgehog)   242 221
Procavia_capensis_76_1   (Cape rock hyrax)   288 263
Loxodonta_africana_76_3   (African savanna elephant)   403 360
Echinops_telfairi_76   (Small Madagascar hedgehog)   249 234
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   383 343
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   206 189
Macropus_eugenii_76_1.0   (Tammar wallaby)   276 249
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   401 355
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   334 303
Ornithorhynchus_anatinus_76_5   (Platypus)   307 289
Saccoglossus_kowalevskii_v3.0 553 471
Petromyzon_marinus_76_7.0   (Sea lamprey)   189 173
Meleagris_gallopavo_76_2   (Turkey)   320 288
Gallus_gallus_76_4   (Chicken)   281 252
Anas_platyrhynchos_76_1.0   (Mallard)   290 266
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   313 283
Ficedula_albicollis_76_1.0   (Collared flycatcher)   292 259
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   327 290
Anolis_carolinensis_76_2.0   (Green anole)   309 275
Xenopus_laevis_   (African clawed frog)   562 528
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   392 351
Latimeria_chalumnae_76_1   (Coelacanth)   390 343
Lepisosteus_oculatus_76   (Spotted gar)   416 363
Gadus_morhua_76_1   (Atlantic cod)   334 305
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   381 345
Takifugu_rubripes_76_4   (Torafugu)   758 684
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   435 395
Oryzias_latipes_76_1   (Japanese medaka)   361 323
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   336 299
Poecilia_formosa_76   (Amazon molly)   337 296
Oreochromis_niloticus_76_1.0   (Nile tilapia)   435 391
Astyanax_mexicanus_76   (Mexican tetra)   337 303
Danio_rerio_76_9   (Zebrafish)   534 489
Oikopleura_dioica 220 203
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   408 366
Ciona_intestinalis_76   (Vase tunicate)   274 245
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   394 353
Adineta_vaga 623 555
Octopus_bimaculoides_280 381 343
Crassostrea_gigas_22   (Pacific oyster)   289 256
Lottia_gigantea_   (Owl limpet)   281 252
Helobdella_robusta_ 237 214
Capitella_sp._I_ 322 286
Danaus_plexippus_OGS1.0   (Monarch butterfly)   225 205
Heliconius_melpomene_   (Postman butterfly)   207 191
Bombyx_mori_   (Domestic silkworm)   219 216
Nasonia_vitripennis_   (Jewel wasp)   193 178
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   373 350
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   227 208
Linepithema_humile_v1.1   (Argentine ant)   229 207
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   226 208
Solenopsis_invicta_v.2.2.3   (Red fire ant)   207 197
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   220 202
Atta_cephalotes_v1.1 238 218
Camponotus_floridanus_v3.3   (Florida carpenter ant)   220 198
Lucilia_cuprina   (Australian sheep blowfly)   212 191
Drosophila_grimshawi_1.3 227 208
Drosophila_willistoni_1.3 218 198
Drosophila_pseudoobscura_2.13 222 202
Drosophila_persimilis_1.3 235 214
Drosophila_suzukii 221 193
Drosophila_yakuba_1.3 210 186
Drosophila_simulans_1.3 181 166
Drosophila_sechellia_1.3 203 187
Drosophila_melanogaster_76_5   (Fruit fly)   415 364
Drosophila_erecta_1.3 207 184
Drosophila_ananassae_1.3 213 192
Drosophila_virilis_1.2 207 187
Drosophila_mojavensis_1.3 203 182
Megaselia_scalaris_22 98 95
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   244 222
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   275 257
Anopheles_darlingi_22   (American malaria mosquito)   178 166
Anopheles_gambiae_49_3j   (African malaria mosquito)   212 195
Tribolium_castaneum_3.0   (Red flour beetle)   230 205
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   236 214
Acyrthosiphon_pisum_   (Pea aphid)   215 194
Rhodnius_prolixus_22 221 207
Daphnia_pulex_   (Common water flea)   290 275
Strigamia_maritima_22 262 229
Sarcoptes_scabiei 170 151
Tetranychus_urticae_   (Two-spotted spider mite)   200 186
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   189 178
Pristionchus_pacificus_ 162 157
Meloidogyne_incognita_   (Southern root-knot nematode)   179 170
Meloidogyne_hapla_ 118 112
Onchocerca_volvulus_22 176 159
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   238 210
Caenorhabditis_japonica_ 172 160
Caenorhabditis_brenneri_ 252 229
Caenorhabditis_remanei_ 213 194
Caenorhabditis_elegans_76_235   (Roundworm)   284 260
Caenorhabditis_briggsae_2 180 168
Trichinella_spiralis_22 204 191
Hymenolepis_microstoma_ 183 164
Echinococcus_multilocularis_ 194 176
Echinococcus_granulosus_ 195 172
Taenia_solium_   (Pork tapeworm)   192 177
Schistosoma_mansoni_ 253 233
Mnemiopsis_leidyi   (Sea walnut)   234 213
Thelohanellus_kitauei 96 90
Acropora_digitifera_v1.0 322 309
Nematostella_vectensis_1.0   (Starlet sea anemone)   341 312
Hydra_vulgaris 282 265
Amphimedon_queenslandica 372 342
Trichoplax_adhaerens_ 279 240
Proterospongia_sp._ATCC_50818_ 259 214
Monosiga_brevicollis_ 194 176
Sphaeroforma_arctica_JP610_ 171 167
Capsaspora_owczarzaki_ATCC_30864_ 188 174
Conidiobolus_coronatus_NRRL28638_v1.0 146 138
Mortierella_verticillata_NRRL_6337_ 196 181
Phycomyces_blakesleeanus_ 199 186
Rhizopus_oryzae_RA_99-880_ 209 198
Mucor_circinelloides_ 206 193
Rhizomucor_miehei_CAU432_ 181 173
Malassezia_globosa_CBS_7966_ 227 209
Sporisorium_reilianum_22 123 115
Ustilago_maydis_ 118 113
Mixia_osmundae_IAM_14324_v1.0 130 119
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 123 115
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 132 124
Melampsora_laricis-populina_ 130 121
Rhodotorula_graminis_WP1_v1.0 113 108
Sporobolomyces_roseus_IAM_13481_ 113 103
Microbotryum_violaceum_22 124 118
Wallemia_sebi_v1.0 114 107
Sphaerobolus_stellatus_v1.0 430 383
Piloderma_croceum_F_1598_v1.0 364 298
Serpula_lacrymans_var._lacrymans_S7.9_ 154 144
Coniophora_puteana 273 218
Hydnomerulius_pinastri_v2.0 351 321
Paxillus_rubicundulus_Ve08.2h10_v1.0 197 186
Pisolithus_microcarpus_441_v1.0 325 300
Pisolithus_tinctorius_Marx_270_v1.0 312 293
Scleroderma_citrinum_Foug_A_v1.0 239 219
Coprinopsis_cinerea_okayama7_130_v3 156 151
Pleurotus_ostreatus_   (Oyster mushroom)   171 162
Amanita_thiersii_Skay4041_v1.0 141 132
Amanita_muscaria_Koide_v1.0   (Fly agaric)   389 330
Galerina_marginata_v1.0 208 194
Hebeloma_cylindrosporum_h7_v2.0 170 160
Laccaria_bicolor_S238N-H82_ 285 268
Agaricus_bisporus_var._bisporus_ 155 147
Schizophyllum_commune_ 155 148
Stereum_hirsutum_FP-91666_SS1__v1.0 181 166
Heterobasidion_annosum_ 155 143
Gloeophyllum_trabeumv1.0 150 142
Punctularia_strigosozonata_v1.0 197 189
Sebacina_vermifera_MAFF_305830_v1.0 411 322
Fomitiporia_mediterranea_v1.0 238 195
Tulasnella_calospora_AL13/4D_v1.0 247 224
Postia_placenta_ 210 202
Wolfiporia_cocos_MD-104_SS10__v1.0 169 157
Fomitopsis_pinicolav1.0 162 155
Fomitopsis_pinicola_FP-58527_SS1_v3.0 157 151
Phanerochaete_chrysosporium_RP-78_2.1 135 131
Dichomitus_squalens 215 199
Trametes_versicolor_v1.0 160 151
Tremella_mesenterica_   (Witches' butter)   118 109
Daldinia_eschscholzii_EC12_v1.0 135 127
Apiospora_montagnei_NRRL_25634_v1.0 142 133
Magnaporthe_poae_ATCC_64411_22 122 112
Magnaporthe_grisea_70-15_ 128 119
Podospora_anserina_ 157 142
Sporotrichum_thermophile_ATCC_42464_ 121 116
Thielavia_terrestris_NRRL_8126_ 139 127
Chaetomium_globosum_CBS_148.51_ 141 130
Neurospora_tetrasperma_ 130 119
Neurospora_discreta_FGSC_8579_ 122 116
Neurospora_crassa_OR74A_ 130 120
Cryphonectria_parasitica_   (Chestnut blight fungus)   130 123
Verticillium_albo-atrum_VaMs.102_ 121 115
Verticillium_dahliae_VdLs.17_ 125 119
Acremonium_alcalophilumv_1.0 125 117
Glomerella_graminicola_22 129 123
Fusarium_graminearum_ 145 137
Nectria_haematococca_mpVI_ 153 141
Fusarium_oxysporum_f._sp._lycopersici_4286_ 154 143
Fusarium_verticillioides_7600_ 128 118
Trichoderma_asperellum_CBS_433.97_v1.0 156 144
Trichoderma_atroviride_ 160 147
Trichoderma_citrinoviride_v1.0 141 126
Trichoderma_reesei_1.2 144 131
Trichoderma_virens_Gv29-8_ 178 159
Trichoderma_longibrachiatum_ATCC_18648_v1.0 144 128
Trichoderma_harzianum_CBS_226.95_v1.0 181 160
Amorphotheca_resinae_v1.0   (Creosote fungus)   136 126
Botrytis_cinerea_B05.10_ 130 121
Sclerotinia_sclerotiorum_ 152 138
Blumeria_graminis_22 127 116
Didymella_exigua_CBS_183.55_v1.0 139 131
Leptosphaeria_maculans_22 132 123
Setosphaeria_turcica_v1.0 150 137
Cochliobolus_miyabeanus_ATCC_44560_v1.0 146 134
Cochliobolus_victoriae_FI3_v1.0 155 142
Cochliobolus_carbonum_26-R-13_v1.0 149 136
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   143 131
Alternaria_brassicicola_ 128 120
Cochliobolus_lunatus_m118_v2.0 153 139
Pyrenophora_teres_f._teres_22 136 126
Pyrenophora_tritici-repentis_ 143 128
Stagonospora_nodorum_ 132 126
Mycosphaerella_graminicola_IPO323_ 137 126
Zasmidium_cellare_ATCC_36951_v1.0 137 128
Dothistroma_septosporum 133 129
Septoria_musiva_v1.0 129 120
Mycosphaerella_fijiensis_CIRAD86_ 121 114
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 141 132
Paracoccidioides_brasiliensis_Pb18_ 131 123
Coccidioides_posadasii_RMSCC_3488_ 134 127
Coccidioides_immitis_RS_ 131 121
Ajellomyces_dermatitidis_SLH14081_ 137 129
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 136 126
Microsporum_canis_CBS_113480_ 131 125
Trichophyton_equinum_CBS_127.97_ 135 125
Trichophyton_verrucosum_HKI_0517_ 132 124
Arthroderma_benhamiae_CBS_112371_ 132 125
Trichophyton_tonsurans_CBS_112818_ 139 127
Trichophyton_rubrum_CBS_118892_ 137 128
Uncinocarpus_reesii_1704_ 129 120
Aspergillus_zonatus_v1.0 142 131
Penicillium_chrysogenum_Wisconsin_54-1255_ 141 130
Penicillium_chrysogenum_v1.0 147 137
Aspergillus_acidus_v1.0 148 138
Aspergillus_fumigatus_Af293 139 127
Aspergillus_brasiliensis_v1.0 145 134
Aspergillus_nidulans_FGSC_A4_ 148 135
Aspergillus_sydowii_v1.0 138 129
Aspergillus_versicolor_v1.0 146 131
Aspergillus_glaucus 150 139
Aspergillus_carbonarius_ITEM_5010_ 136 127
Neosartorya_fischeri_NRRL_181_ 132 123
Aspergillus_terreus_NIH2624_ 142 127
Aspergillus_tubingensis_v1.0 147 134
Aspergillus_wentii_v1.0 157 136
Aspergillus_oryzae_RIB40_ 140 131
Aspergillus_niger_22 147 134
Aspergillus_niger_ATCC_1015_ 109 101
Aspergillus_flavus_NRRL3357_ 134 127
Aspergillus_clavatus_NRRL_1_ 137 127
Penicillium_marneffei_ATCC_18224_ 148 140
Tuber_melanosporum_Mel28_22 137 126
Tuber_melanosporum_Vittad_   (Perigord truffle)   144 133
Hansenula_polymorpha_v2.0 118 113
Dekkera_bruxellensis_CBS_2499_v2.0 124 116
Pichia_membranifaciensv1.0 114 105
Candida_tanzawaensis_NRRL_Y-17324__v1.0 126 114
Candida_dubliniensis_CD36_ 116 107
Candida_tropicalis_MYA-3404_ 120 111
Candida_parapsilosis_ 131 117
Candida_albicans_SC5314 124 115
Lodderomyces_elongisporus_NRRL_YB-4239_ 115 104
Babjeviella_inositovora_NRRL_Y-12698_v1.0 129 120
Pichia_stipitis_CBS_6054_ 118 109
Candida_guilliermondii_ATCC_6260_ 123 111
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 128 119
Debaromyces_hansenii 125 119
Wickerhamomyces_anomalus 128 119
Pichia_pastoris_GS115_ 128 118
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 92 86
Yarrowia_lipolytica_CLIB122 134 123
Candida_lusitaniae_ATCC_42720_ 116 106
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 107 103
Vanderwaltozyma_polyspora_DSM_70294_ 118 109
Candida_glabrata_CBS138 121 111
Kluyveromyces_thermotolerans_CBS_6340 122 112
Lachancea_kluyveri_ 128 116
Kluyveromyces_waltii 121 112
Ashbya_gossypii_ATCC_10895_ 120 112
Zygosaccharomyces_rouxii_ 124 112
Saccharomyces_mikatae_MIT 127 119
Saccharomyces_paradoxus_MIT 125 116
Saccharomyces_cerevisiae_76   (Baker's yeast)   124 111
Saccharomyces_bayanus_MIT 124 115
Kluyveromyces_lactis 124 111
Schizosaccharomyces_cryophilus_OY26_22 141 131
Schizosaccharomyces_octosporus_yFS286_ 138 130
Schizosaccharomyces_japonicus_yFS275_ 143 133
Schizosaccharomyces_pombe   (Fission yeast)   146 134
Catenaria_anguillulae_PL171_v1.0 195 182
Allomyces_macrogynus_ATCC_38327_ 360 331
Spizellomyces_punctatus_DAOM_BR117_ 233 205
Dictyostelium_discoideum 212 191
Dictyostelium_purpureum_ 209 188
Entamoeba_dispar_1.2 171 163
Entamoeba_invadens_1.2 157 151
Entamoeba_histolytica_1 149 141
Selaginella_moellendorffii_ 410 383
Pinus_taeda   (Loblolly pine)   304 291
Picea_abies   (Norway spruce)   147 144
Eucalyptus_grandis_v201   (Rose gum)   467 435
Theobroma_cacao_B97-61/B2_v1   (Cacao)   267 246
Gossypium_raimondii_v221 1024 953
Citrus_clementina_v165 415 391
Citrus_sinensis_v154   (Sweet orange)   624 565
Thellungiella_halophila_v173 310 289
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   396 365
Capsella_rubella_v183 295 270
Arabidopsis_lyrata_   (Lyrate rockcress)   284 263
Arabidopsis_thaliana_10   (Thale cress)   399 355
Carica_papaya_   (Papaya)   228 222
Medicago_truncatula_   (Barrel medic)   445 423
Phaseolus_vulgaris_v186   (French bean)   334 316
Glycine_max_v109   (Soybean)   624 587
Cucumis_sativus_v122   (Cucumber)   357 333
Fragaria_vesca_   (Wild strawberry)   270 251
Malus_domestica_v196   (Apple)   605 587
Prunus_persica_v139   (Peach)   272 257
Linum_usitatissimum_v200   (Flax)   476 450
Manihot_esculenta_v147   (Cassava)   379 352
Populus_trichocarpa_v156   (Black cottonwood)   431 403
Vitis_vinifera_   (Wine grape)   286 266
Mimulus_guttatus_v140   (Spotted monkey flower)   298 282
Solanum_lycopersicum_v.2.3   (Tomato)   293 275
Solanum_tuberosum_   (Potato)   389 362
Actinidia_chinensis_Hongyang_ 367 351
Aquilegia_coerulea_v195 574 531
Triticum_urartu_22 225 213
Triticum_aestivum_22   (Bread wheat)   811 784
Aegilops_tauschii_22 248 236
Brachypodium_distachyon_   (Stiff brome)   304 287
Oryza_barthii_22   (African wild rice)   369 339
Oryza_meridionalis_22 404 366
Oryza_glumaepatula_22 391 369
Oryza_glaberrima   (African rice)   200 193
Oryza_punctata_22 404 375
Oryza_nivara_22 414 385
Oryza_brachyantha_22   (Malo sina)   244 228
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   360 344
Oryza_sativa_v193   (Rice)   352 336
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   341 326
Panicum_virgatum_v202   (Switchgrass)   508 493
Setaria_italica_v164   (Foxtail millet)   315 299
Zea_mays_subsp._mays_   (Maize)   480 447
Zea_mays_v181   (Maize)   540 514
Sorghum_bicolor_   (Sorghum)   247 225
Musa_balbisiana   (Balbis banana)   320 304
Musa_acuminata_22   (Wild Malaysian banana)   343 325
Amborella_trichopoda_22 234 218
Physcomitrella_patens 298 284
Coccomyxa_subellipsoidea_sp._C-169_v2 141 132
Asterochloris_sp._Cgr/DA1pho_v1.0 148 130
Chlorella_variabilis_sp._NC64A_ 143 135
Chlorella_vulgaris_ 132 128
Volvox_carteri_f._nagariensis_ 210 188
Volvox_carteri_v199 198 174
Chlamydomonas_reinhardtii_4.0 196 175
Ostreococcus_sp._RCC809_ 124 117
Ostreococcus_lucimarinus_CCE9901_ 134 125
Ostreococcus_tauri_ 122 114
Bathycoccus_prasinos_ 145 134
Micromonas_sp._RCC299_ 176 156
Micromonas_pusilla_CCMP1545_v3.0 185 166
Cyanidioschyzon_merolae_strain_10D_22 93 89
Cyanidioschyzon_merolae 92 87
Porphyridium_purpureum_02_2012 137 130
Thecamonas_trahens_ATCC_50062_ 268 233
Bigelowiella_natans_CCMP2755_22 261 240
Giardia_lamblia_2.3 104 97
Cyanophora_paradoxa_ 326 310
Leishmania_mexicana_2.4 157 146
Leishmania_major_strain_Friedlin_ 152 144
Leishmania_infantum_JPCM5_2.4 163 150
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 161 148
Trypanosoma_vivax_ 173 163
Trypanosoma_cruzi_strain_CL_Brener 154 143
Trypanosoma_congolense_2.4 202 186
Trypanosoma_brucei_gambiense_v4.1 173 162
Trypanosoma_brucei_TREU927_v4.1 177 165
Ectocarpus_siliculosus 240 211
Aureococcus_anophagefferens_ 192 172
Albugo_laibachii_22 284 241
Pythium_iwayamai_DAOM_BR242034_22 236 206
Pythium_arrhenomanes_ATCC_12531_22 221 197
Pythium_ultimum_v1.7-2 231 205
Pythium_aphanidermatum_DAOM_BR444_22 225 191
Pythium_irregulare_DAOM_BR486_22 233 196
Pythium_vexans_DAOM_BR484_22 213 190
Phytophthora_ramorum_1.1   (Sudden oak death agent)   198 185
Phytophthora_sojae_1.1 214 192
Phytophthora_infestans_T30-4_ 242 209
Phytophthora_capsici_ 203 185
Hyaloperonospora_arabidopsidis_22 159 152
Phaeodactylum_tricornutumCCAP_1055/1 107 101
Fragilariopsis_cylindrus 188 174
Thalassiosira_pseudonana_CCMP1335 128 115
Perkinsus_marinus_ATCC_50983_ 255 235
Paramecium_tetraurelia_ 1017 864
Tetrahymena_thermophila_SB210_1_ 617 485
Ichthyophthirius_multifiliis_strain_G5_ 258 216
Cryptosporidium_hominis 79 75
Cryptosporidium_muris 97 89
Cryptosporidium_parvum_Iowa_II 90 84
Neospora_caninum 121 110
Toxoplasma_gondii_VEG 119 113
Toxoplasma_gondii_ME49 129 119
Toxoplasma_gondii_GT1 119 112
Babesia_bovis_T2Bo_ 168 158
Theileria_parva__ 75 71
Theileria_annulata 80 73
Plasmodium_falciparum_3D7_ 104 89
Plasmodium_vivax_SaI-1_7.0 117 102
Plasmodium_knowlesi_strain_H_ 110 101
Plasmodium_yoelii_ssp._yoelii_1_ 99 92
Plasmodium_chabaudi_ 109 95
Plasmodium_berghei_ANKA_ 106 93
Symbiodinium_minutum_clade_B1_v1.2 313 287
Naegleria_gruberi_ 278 252
Trichomonas_vaginalis_ 582 530
Guillardia_theta_CCMP2712_v1.0_ 390 336
Emiliania_huxleyi_CCMP1516_ 218 216
Leptolyngbya_sp._PCC_7376 17 12
Pseudanabaena_sp._PCC_7367 8 8
Acaryochloris_marina_MBIC11017 61 36
Synechocystis_sp._PCC_6803 9 6
Thermosynechococcus_sp._NK55 2 2
Thermosynechococcus_elongatus_BP-1 2 2
Synechococcus_sp._PCC_7502 9 9
Synechococcus_sp._PCC_6312 7 5
Prochlorococcus_marinus_str._MIT_9515 1 1
Microcoleus_sp._PCC_7113 56 41
Trichodesmium_erythraeum_IMS101 26 21
Geitlerinema_sp._PCC_7407 10 7
Cyanothece_sp._PCC_8802 14 10
Gloeocapsa_sp._PCC_7428 13 10
Halothece_sp._PCC_7418 3 3
Microcystis_aeruginosa_NIES-843 18 13
Gloeobacter_violaceus_PCC_7421 25 13
Rivularia_sp._PCC_7116 40 31
Calothrix_sp._PCC_7507 30 23
Anabaena_variabilis_ATCC_29413 41 26
'Nostoc_azollae'_0708 9 9
Nostoc_sp._PCC_7107 23 17
Nostoc_punctiforme_PCC_73102 44 28
Nostoc_sp._PCC_7120 35 24
Nostoc_sp._PCC_7524 36 25
Anabaena_sp._90 22 17
Ilumatobacter_coccineus 1 1
Modestobacter_marinus 1 1
Blastococcus_saxobsidens_DD2 1 1
Geodermatophilus_obscurus_DSM_43160 1 1
Catenulispora_acidiphila_DSM_44928 8 6
Stackebrandtia_nassauensis_DSM_44728 4 3
Frankia_symbiont_of_Datisca_glomerata 9 8
Frankia_sp._EAN1pec 24 21
Frankia_alni_ACN14a 20 18
Thermobifida_fusca_YX 1 1
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 2 1
Thermomonospora_curvata_DSM_43183 9 7
Streptosporangium_roseum_DSM_43021 14 11
Kitasatospora_setae_KM-6054 11 5
Streptomyces_coelicolor_A3(2) 5 3
Streptomyces_sp._PAMC26508 1 1
Streptomyces_flavogriseus_ATCC_33331 3 2
Streptomyces_griseus_subsp._griseus_NBRC_13350 5 4
Streptomyces_bingchenggensis_BCW-1 14 11
Streptomyces_violaceusniger_Tu_4113 4 3
Streptomyces_avermitilis_MA-4680 2 1
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 2 2
Streptomyces_scabiei_87.22 3 2
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 4 3
Actinosynnema_mirum_DSM_43827 4 3
Pseudonocardia_dioxanivorans_CB1190 2 1
Saccharopolyspora_erythraea_NRRL_2338 1 1
Amycolatopsis_mediterranei_U32 7 3
Nocardioides_sp._JS614 1 1
Propionibacterium_propionicum_F0230a 3 3
Verrucosispora_maris_AB-18-032 2 1
Micromonospora_sp._L5 4 2
Micromonospora_aurantiaca_ATCC_27029 6 3
Actinoplanes_sp._N902-109 4 3
Actinoplanes_sp._SE50/110 9 7
Actinoplanes_missouriensis_431 4 4
Gordonia_sp._KTR9 2 1
Gordonia_polyisoprenivorans_VH2 1 1
Gordonia_bronchialis_DSM_43247 1 1
Rhodococcus_equi_103S 2 1
Rhodococcus_erythropolis_PR4 1 1
Nocardia_cyriacigeorgica_GUH-2 2 1
Nocardia_farcinica_IFM_10152 1 1
Amycolicicoccus_subflavus_DQS3-9A1 2 1
Mycobacterium_gilvum_PYR-GCK 1 1
Mycobacterium_marinum_M 2 1
Cellulomonas_fimi_ATCC_484 2 2
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 5 3
Anaerolinea_thermophila_UNI-1 2 2
Herpetosiphon_aurantiacus_DSM_785 1 1
Roseiflexus_sp._RS-1 12 6
Roseiflexus_castenholzii_DSM_13941 1 1
Chloroflexus_sp._MS-G 8 5
Chloroflexus_sp._Y-400-fl 4 3
Chloroflexus_aggregans_DSM_9485 6 4
Chloroflexus_aurantiacus_J-10-fl 4 3
Deinococcus_geothermalis_DSM_11300 1 1
Marinithermus_hydrothermalis_DSM_14884 2 2
Meiothermus_silvanus_DSM_9946 1 1
Meiothermus_ruber_DSM_1279 1 1
Clostridium_cellulolyticum_H10 1 1
Ruminococcus_albus_7 1 1
Pelotomaculum_thermopropionicum_SI 1 1
Syntrophobotulus_glycolicus_DSM_8271 1 1
Desulfotomaculum_reducens_MI-1 1 1
Alkaliphilus_oremlandii_OhILAs 1 1
Clostridium_ljungdahlii_DSM_13528 1 1
Clostridium_botulinum_A_str._ATCC_3502 1 1
Clostridium_acetobutylicum_ATCC_824 1 1
Thermodesulfobium_narugense_DSM_14796 4 2
Thermoanaerobacter_wiegelii_Rt8.B1 1 1
Streptococcus_agalactiae_A909 1 1
Exiguobacterium_sp._MH3 1 1
Paenibacillus_terrae_HPL-003 2 2
Bacillus_weihenstephanensis_KBAB4 1 1
Bacillus_thuringiensis_str._Al_Hakam 1 1
Bacillus_cereus_03BB102 1 1
Bacillus_anthracis_str._A0248 1 1
Bacillus_pumilus_SAFR-032 1 1
Melioribacter_roseus_P3M 1 1
Ignavibacterium_album_JCM_16511 1 1
Pelodictyon_phaeoclathratiforme_BU-1 3 2
Chlorobium_luteolum_DSM_273 1 1
Chlorobium_chlorochromatii_CaD3 1 1
Chlorobium_phaeobacteroides_DSM_266 3 2
Chlorobium_phaeovibrioides_DSM_265 1 1
Chlorobium_limicola_DSM_245 1 1
Chlorobaculum_parvum_NCIB_8327 3 2
Chlorobium_tepidum_TLS 1 1
Chloroherpeton_thalassium_ATCC_35110 9 8
Prosthecochloris_aestuarii_DSM_271 3 2
Haliscomenobacter_hydrossis_DSM_1100 27 18
Saprospira_grandis_str._Lewin 3 3
Niastella_koreensis_GR20-10 2 2
Chitinophaga_pinensis_DSM_2588 1 1
Flexibacter_litoralis_DSM_6794 4 3
Marivirga_tractuosa_DSM_4126 3 3
Leadbetterella_byssophila_DSM_17132 1 1
Dyadobacter_fermentans_DSM_18053 2 2
Cytophaga_hutchinsonii_ATCC_33406 4 4
Spirosoma_linguale_DSM_74 1 1
Runella_slithyformis_DSM_19594 1 1
Paludibacter_propionicigenes_WB4 1 1
Odoribacter_splanchnicus_DSM_20712 2 2
Bacteroides_helcogenes_P_36-108 1 1
Bacteroides_fragilis_YCH46 2 2
Pedobacter_saltans_DSM_12145 1 1
Solitalea_canadensis_DSM_3403 1 1
Pedobacter_heparinus_DSM_2366 1 1
Sphingobacterium_sp._21 1 1
Owenweeksia_hongkongensis_DSM_17368 1 1
Maribacter_sp._HTCC2170 2 2
Croceibacter_atlanticus_HTCC2559 1 1
Muricauda_ruestringensis_DSM_13258 1 1
Cellulophaga_algicola_DSM_14237 1 1
Polaribacter_sp._MED152 1 1
Capnocytophaga_canimorsus_Cc5 1 1
Waddlia_chondrophila_WSU_86-1044 1 1
Candidatus_Protochlamydia_amoebophila_UWE25 6 6
Parachlamydia_acanthamoebae_UV-7 7 7
Simkania_negevensis_Z 1 1
Isosphaera_pallida_ATCC_43644 8 7
Planctomyces_brasiliensis_DSM_5305 9 7
Planctomyces_limnophilus_DSM_3776 7 6
Rhodopirellula_baltica_SH_1 11 11
Pirellula_staleyi_DSM_6068 15 14
Opitutus_terrae_PB90-1 2 2
Turneriella_parva_DSM_21527 2 2
Borrelia_garinii_PBi 1 1
Borrelia_bissettii_DN127 1 1
Borrelia_afzelii_PKo 2 2
Borrelia_burgdorferi_B31 1 1
Borrelia_recurrentis_A1 1 1
Borrelia_duttonii_Ly 1 1
Borrelia_crocidurae_str._Achema 2 2
Borrelia_turicatae_91E135 1 1
Borrelia_hermsii_DAH 1 1
Spirochaeta_smaragdinae_DSM_11293 1 1
Treponema_primitia_ZAS-2 3 2
Treponema_brennaborense_DSM_12168 1 1
Treponema_succinifaciens_DSM_2489 1 1
Treponema_denticola_ATCC_35405 1 1
Thermodesulfobacterium_sp._OPB45 2 2
Desulfurispirillum_indicum_S5 1 1
Calditerrivibrio_nitroreducens_DSM_19672 3 3
Marinitoga_piezophila_KA3 2 2
Petrotoga_mobilis_SJ95 1 1
Mesotoga_prima_MesG1.Ag.4.2 1 1
Kosmotoga_olearia_TBF_19.5.1 1 1
Fervidobacterium_pennivorans_DSM_9078 1 1
Fervidobacterium_nodosum_Rt17-B1 4 2
Thermosipho_africanus_TCF52B 1 1
Thermotoga_sp._RQ2 2 2
Thermotoga_naphthophila_RKU-10 2 2
Thermotoga_petrophila_RKU-1 3 3
Thermotoga_neapolitana_DSM_4359 1 1
Thermotoga_maritima_MSB8 3 3
Desulfurobacterium_thermolithotrophum_DSM_11699 1 1
Sulfurihydrogenibium_sp._YO3AOP1 2 2
Persephonella_marina_EX-H1 1 1
Caldisericum_exile_AZM16c01 1 1
Candidatus_Chloracidobacterium_thermophilum_B 2 2
Candidatus_Solibacter_usitatus_Ellin6076 2 2
Granulicella_mallensis_MP5ACTX8 1 1
Candidatus_Koribacter_versatilis_Ellin345 1 1
Terriglobus_saanensis_SP1PR4 1 1
Candidatus_Nitrospira_defluvii 2 2
Streptobacillus_moniliformis_DSM_12112 1 1
Sebaldella_termitidis_ATCC_33386 2 2
Nautilia_profundicola_AmH 3 3
Nitratifractor_salsuginis_DSM_16511 1 1
Sulfurospirillum_deleyianum_DSM_6946 1 1
Sulfurospirillum_barnesii_SES-3 1 1
Arcobacter_sp._L 2 2
Arcobacter_nitrofigilis_DSM_7299 1 1
Arcobacter_butzleri_RM4018 2 2
Campylobacter_hominis_ATCC_BAA-381 1 1
Campylobacter_lari_RM2100 1 1
Campylobacter_curvus_525.92 3 3
Campylobacter_concisus_13826 4 4
Campylobacter_jejuni_subsp._doylei_269.97 1 1
Campylobacter_sp._03-427 3 3
Campylobacter_fetus_subsp._fetus_82-40 3 3
uncultured_Sulfuricurvum_sp._RIFRC-1 3 3
Sulfuricurvum_kujiense_DSM_16994 4 4
Sulfurimonas_autotrophica_DSM_16294 2 2
Sulfurimonas_denitrificans_DSM_1251 2 2
Wolinella_succinogenes_DSM_1740 5 5
Helicobacter_cetorum_MIT_00-7128 1 1
Helicobacter_bizzozeronii_CIII-1 1 1
Helicobacter_hepaticus_ATCC_51449 2 2
Helicobacter_mustelae_12198 2 2
Helicobacter_cinaedi_PAGU611 1 1
Helicobacter_pylori_B38 1 1
Nitratiruptor_sp._SB155-2 2 2
Sulfurovum_sp._NBC37-1 1 1
Desulfomonile_tiedjei_DSM_6799 3 3
Syntrophobacter_fumaroxidans_MPOB 1 1
Desulfurivibrio_alkaliphilus_AHT2 1 1
Desulfatibacillum_alkenivorans_AK-01 1 1
Desulfovibrio_magneticus_RS-1 1 1
Desulfovibrio_africanus_str._Walvis_Bay 1 1
Geobacter_lovleyi_SZ 1 1
Geobacter_metallireducens_GS-15 2 1
Pelobacter_propionicus_DSM_2379 1 1
Babela_massiliensis 2 2
Haliangium_ochraceum_DSM_14365 34 21
Sorangium_cellulosum_'So_ce_56' 19 11
Anaeromyxobacter_sp._Fw109-5 1 1
Anaeromyxobacter_dehalogenans_2CP-1 1 1
Stigmatella_aurantiaca_DW4/3-1 7 5
Corallococcus_coralloides_DSM_2259 6 5
Myxococcus_xanthus_DK_1622 6 4
Myxococcus_fulvus_HW-1 3 2
Dechloromonas_aromatica_RCB 1 1
Thauera_sp._MZ1T 2 1
Azoarcus_sp._KH32C 1 1
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 10 5
Leptothrix_cholodnii_SP-6 3 1
Burkholderia_rhizoxinica_HKI_454 1 1
Burkholderia_phymatum_STM815 1 1
Ralstonia_eutropha_JMP134 2 1
Burkholderia_sp._CCGE1002 2 1
Burkholderia_pseudomallei_1106a 1 1
Burkholderia_mallei_SAVP1 1 1
Burkholderia_ambifaria_AMMD 1 1
Burkholderia_gladioli_BSR3 2 1
Burkholderia_glumae_BGR1 2 1
Magnetococcus_marinus_MC-1 2 2
Asticcacaulis_excentricus_CB_48 1 1
Dinoroseobacter_shibae_DFL_12 1 1
Phaeobacter_gallaeciensis_2.10 1 1
Ruegeria_sp._TM1040 1 1
Ruegeria_pomeroyi_DSS-3 1 1
Roseobacter_litoralis_Och_149 1 1
Roseobacter_denitrificans_OCh_114 2 2
Tistrella_mobilis_KA081020-065 2 1
Rhodospirillum_rubrum_F11 2 1
Azospirillum_brasilense_Sp245 2 2
Gluconacetobacter_xylinus_NBRC_3288 3 3
Gluconacetobacter_diazotrophicus_PAl_5 1 1
Acidiphilium_multivorum_AIU301 1 1
Acidiphilium_cryptum_JF-5 1 1
Xanthobacter_autotrophicus_Py2 1 1
Methylobacterium_chloromethanicum_CM4 1 1
Methylobacterium_extorquens_AM1 1 1
Methylobacterium_sp._4-46 1 1
Methylobacterium_populi_BJ001 1 1
Methylobacterium_nodulans_ORS_2060 1 1
Methylobacterium_radiotolerans_JCM_2831 1 1
Sinorhizobium_fredii_NGR234 2 1
Sinorhizobium_medicae_WSM419 1 1
Rhizobium_etli_CIAT_652 1 1
Mesorhizobium_sp._BNC1 1 1
Mesorhizobium_opportunistum_WSM2075 2 2
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 1 1
Mesorhizobium_loti_MAFF303099 3 3
Hyphomicrobium_sp._MC1 2 2
Hyphomicrobium_denitrificans_ATCC_51888 1 1
Nitrobacter_winogradskyi_Nb-255 1 1
Nitrobacter_hamburgensis_X14 1 1
Bradyrhizobium_japonicum_USDA_110 1 1
Bradyrhizobium_sp._ORS_278 1 1
Bartonella_tribocorum_CIP_105476 1 1
Bartonella_clarridgeiae_73 1 1
Bartonella_henselae_str._Houston-1 1 1
Bartonella_grahamii_as4aup 1 1
Saccharophagus_degradans_2-40 1 1
Cellvibrio_japonicus_Ueda107 3 3
Aggregatibacter_actinomycetemcomitans_D7S-1 2 2
Tolumonas_auensis_DSM_9187 1 1
Aeromonas_veronii_B565 1 1
Aeromonas_salmonicida_subsp._salmonicida_A449 1 1
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 1 1
Aliivibrio_salmonicida_LFI1238 1 1
Vibrio_fischeri_MJ11 1 1
Psychromonas_sp._CNPT3 2 2
Idiomarina_loihiensis_L2TR 1 1
Ferrimonas_balearica_DSM_9799 2 2
Shewanella_loihica_PV-4 1 1
Shewanella_sediminis_HAW-EB3 1 1
Shewanella_pealeana_ATCC_700345 1 1
Shewanella_baltica_OS185 1 1
Shewanella_sp._MR-4 1 1
Shewanella_amazonensis_SB2B 1 1
Shewanella_violacea_DSS12 1 1
Shewanella_frigidimarina_NCIMB_400 1 1
Colwellia_psychrerythraea_34H 3 3
Pseudoalteromonas_sp._SM9913 1 1
Pseudoalteromonas_haloplanktis_TAC125 1 1
Alteromonas_sp._SN2 1 1
Kangiella_koreensis_DSM_16069 2 2
Hahella_chejuensis_KCTC_2396 3 3
Marinomonas_posidonica_IVIA-Po-181 1 1
Marinomonas_mediterranea_MMB-1 1 1
Methylomicrobium_alcaliphilum 1 1
Methylomonas_methanica_MC09 4 4
Alkalilimnicola_ehrlichii_MLHE-1 1 1
Thioalkalivibrio_sulfidophilus_HL-EbGr7 1 1
Thioalkalivibrio_sp._K90mix 1 1
Halorhodospira_halophila_SL1 1 1
Thiocystis_violascens_DSM_198 3 2
Nitrosococcus_watsonii_C-113 1 1
Nitrosococcus_halophilus_Nc4 2 2
Nitrosococcus_oceani_ATCC_19707 1 1
Photorhabdus_asymbiotica 2 1
Photorhabdus_luminescens_subsp._laumondii_TTO1 3 2
Xenorhabdus_bovienii_SS-2004 1 1
Providencia_stuartii_MRSN_2154 1 1
Yersinia_pseudotuberculosis_IP_31758 2 2
Sodalis_glossinidius_str._'morsitans' 1 1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1 1
Pseudomonas_entomophila_L48 1 1
Pseudomonas_stutzeri_A1501 1 1
Pseudomonas_fulva_12-X 1 1
Pseudomonas_putida_F1 1 1
Pseudomonas_protegens_Pf-5 3 2
Pseudomonas_mendocina_ymp 1 1
Pseudomonas_aeruginosa_UCBPP-PA14 1 1
Pseudomonas_sp._VLB120 1 1
Methylophaga_sp._JAM1 2 2
Thiomicrospira_crunogena_XCL-2 1 1
Cenarchaeum_symbiosum_A 1 1
Fervidicoccus_fontis_Kam940 1 1
Hyperthermus_butylicus_DSM_5456 1 1
Ignicoccus_hospitalis_KIN4/I 2 2
Staphylothermus_hellenicus_DSM_12710 1 1
Thermoproteus_neutrophilus_V24Sta 1 1
Methanocella_paludicola_SANAE 2 2
Methanosaeta_harundinacea_6Ac 5 4
Methanosaeta_concilii_GP6 1 1
Methanosalsum_zhilinae_DSM_4017 1 1
Methanosarcina_acetivorans_C2A 2 1
Methanosarcina_barkeri_str._Fusaro 5 4
Thermococcus_barophilus_MP 1 1
Methanobrevibacter_ruminantium_M1 2 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   666 610
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   342 303
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   226 206
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   185 175
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   218 199
Cryptococcus_neoformans_var._grubii_H99_ 128 119
Cryptococcus_neoformans_B-3501A_ 122 116
Cryptococcus_neoformans_JEC21_ 120 113
Paracoccidioides_brasiliensis_Pb01_ 131 123
Paracoccidioides_brasiliensis_Pb03_ 137 127
Coccidioides_posadasii_str._Silveira_ 127 119
Coccidioides_immitis_RMSCC_3703_ 116 111
Coccidioides_immitis_RMSCC_2394_ 131 121
Coccidioides_immitis_H538.4_ 118 114
Ajellomyces_dermatitidis_ER-3_ 140 132
Histoplasma_capsulatum_H143 128 121
Histoplasma_capsulatum_H88 136 127
Histoplasma_capsulatum_G186AR 143 131
Aspergillus_fumigatus_A1163_ 146 132
Candida_albicans_WO-1_ 113 105
Saccharomyces_cerevisiae_UC5 106 93
Saccharomyces_cerevisiae_PW5 111 99
Saccharomyces_cerevisiae_FL100 54 48
Saccharomyces_cerevisiae_CLIB382 3 3
Saccharomyces_cerevisiae_CLIB324 58 51
Saccharomyces_cerevisiae_CBS7960 93 83
Saccharomyces_cerevisiae_YJM269 94 85
Saccharomyces_cerevisiae_T7 125 112
Saccharomyces_cerevisiae_FostersB 103 96
Saccharomyces_cerevisiae_FostersO 100 93
Saccharomyces_cerevisiae_VL3 113 103
Saccharomyces_cerevisiae_Vin13 113 103
Saccharomyces_cerevisiae_LalvinQA23 109 100
Saccharomyces_cerevisiae_AWRI796 103 99
Saccharomyces_cerevisiae_Sigma1278b 125 112
Saccharomyces_cerevisiae_W303 122 109
Saccharomyces_cerevisiae_JAY291 124 110
Saccharomyces_cerevisiae_AWRI1631 85 79
Saccharomyces_cerevisiae_YPS163 36 34
Saccharomyces_cerevisiae_M22 33 31
Saccharomyces_cerevisiae_T73 46 43
Saccharomyces_cerevisiae_CLIB215 77 70
Saccharomyces_cerevisiae_Y10 30 30
Saccharomyces_cerevisiae_YJM789_ 125 111
Saccharomyces_cerevisiae_YJM789 124 110
Saccharomyces_cerevisiae_RM11-1a 122 109
Saccharomyces_cerevisiae_RM11-1a_ 121 108
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   124 111
Schizosaccharomyces_pombe_972h-_ 146 134
Batrachochytrium_dendrobatidis_JEL423_ 225 201
Batrachochytrium_dendrobatidis_JAM81_ 215 193
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   261 237
Hordeum_vulgare_22   (Domesticated barley)   567 557
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   267 252
Trypanosoma_brucei_Lister_427_v4.1 180 163
Neospora_caninum_Nc-Liverpool_6.2 121 110
Plasmodium_falciparum_HB3_ 101 87
Plasmodium_falciparum_Dd2_ 81 73
Chroococcidiopsis_thermalis_PCC_7203 22 16
Chamaesiphon_minutus_PCC_6605 36 24
Synechocystis_sp._PCC_6803_substr._PCC-P 7 5
Synechocystis_sp._PCC_6803_substr._PCC-N 7 5
Synechocystis_sp._PCC_6803_substr._GT-I 7 5
Synechocystis_sp._PCC_6803 9 6
Dactylococcopsis_salina_PCC_8305 4 4
Synechococcus_sp._JA-3-3Ab 1 1
Synechococcus_sp._PCC_7002 3 3
Prochlorococcus_marinus_str._NATL1A 1 1
Prochlorococcus_marinus_str._MIT_9301 1 1
Prochlorococcus_marinus_str._AS9601 1 1
Prochlorococcus_marinus_subsp._marinus_str._CCMP1375 1 1
Prochlorococcus_marinus_subsp._pastoris_str._CCMP1986 1 1
Prochlorococcus_marinus_str._MIT_9215 1 1
Prochlorococcus_marinus_str._MIT_9211 1 1
Prochlorococcus_marinus_str._MIT_9312 1 1
Prochlorococcus_marinus_str._MIT_9303 1 1
Prochlorococcus_marinus_str._NATL2A 1 1
Crinalium_epipsammum_PCC_9333 35 24
Oscillatoria_nigro-viridis_PCC_7112 34 25
Oscillatoria_acuminata_PCC_6304 66 51
Arthrospira_platensis_NIES-39 31 24
Cyanothece_sp._PCC_7822 37 24
Cyanothece_sp._PCC_7425 11 8
Cyanothece_sp._PCC_7424 29 18
Cyanothece_sp._ATCC_51142 21 14
Cyanothece_sp._PCC_8801 12 9
Cyanobacterium_aponinum_PCC_10605 6 6
Cyanobacterium_stanieri_PCC_7202 3 3
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 12 8
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 9 8
Stanieria_cyanosphaera_PCC_7437 18 12
Calothrix_parietina_Calothrix_sp._PCC_6303 44 30
Cylindrospermum_stagnale_PCC_7417 38 25
Anabaena_cylindrica_PCC_7122 24 18
Spiroplasma_chrysopicola_DF-1 1 1
Frankia_sp._EuI1c 33 27
Frankia_sp._CcI3 9 8
Nocardiopsis_alba_ATCC_BAA-2165 2 2
Streptomyces_rapamycinicus_NRRL_5491 4 3
Streptomyces_davawensis_JCM_4913 7 5
Streptomyces_fulvissimus_DSM_40593 1 1
Streptomyces_collinus_Tu_365 7 4
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 2 2
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 4 3
Saccharothrix_espanaensis_DSM_44229 5 5
Amycolatopsis_mediterranei_RB 7 3
Amycolatopsis_mediterranei_S699 7 3
Amycolatopsis_mediterranei_S699 7 3
Amycolatopsis_orientalis_HCCB10007 7 4
Actinoplanes_friuliensis_DSM_7358 2 1
Rhodococcus_pyridinivorans_SB3094 3 2
Nocardia_brasiliensis_ATCC_700358 9 4
Mycobacterium_gilvum_Spyr1 1 1
Mycobacterium_kansasii_ATCC_12478 2 2
Bifidobacterium_asteroides_PRL2011 2 2
Actinomyces_graevenitzii_C83_ 1 1
Actinomyces_viscosus_C505 1 1
Chthonomonas_calidirosea_T49 4 4
Thermus_thermophilus_HB8 1 1
Desulfosporosinus_meridiei_DSM_13257 2 1
Desulfotomaculum_gibsoniae_DSM_7213 1 1
Candidatus_Arthromitus_sp._SFB-rat-Yit 1 1
Clostridium_autoethanogenum_DSM_10061 1 1
Clostridium_botulinum_H04402_065 1 1
Clostridium_botulinum_F_str._230613 1 1
Clostridium_botulinum_F_str._Langeland 1 1
Clostridium_botulinum_B1_str._Okra 1 1
Clostridium_botulinum_Ba4_str._657 1 1
Clostridium_botulinum_A2_str._Kyoto 1 1
Clostridium_botulinum_A3_str._Loch_Maree 1 1
Clostridium_botulinum_A_str._Hall 1 1
Clostridium_botulinum_A_str._ATCC_19397 1 1
Clostridium_acetobutylicum_DSM_1731 1 1
Clostridium_acetobutylicum_EA_2018 1 1
Streptococcus_iniae_SF1 1 1
Streptococcus_agalactiae_ILRI112 1 1
Streptococcus_agalactiae_ILRI005 1 1
Streptococcus_agalactiae_09mas018883 1 1
Streptococcus_agalactiae_GD201008-001 1 1
Streptococcus_agalactiae_NEM316 1 1
Streptococcus_agalactiae_2603V/R 1 1
Paenibacillus_polymyxa_CR1 1 1
Paenibacillus_polymyxa_E681 1 1
Bacillus_thuringiensis_serovar_finitimus_YBT-020 1 1
Bacillus_cereus_FRI-35 1 1
Bacillus_cereus_biovar_anthracis_str._CI 1 1
Bacillus_cereus_AH820 1 1
Bacillus_cereus_AH187 1 1
Bacillus_cereus_Q1 1 1
Bacillus_cereus_F837/76 1 1
Bacillus_cereus_NC7401 1 1
Bacillus_cereus_E33L 1 1
Bacillus_cereus_ATCC_10987 1 1
Bacillus_anthracis_str._H9401 1 1
Bacillus_anthracis_str._CDC_684 1 1
Bacillus_anthracis_str._'Ames_Ancestor' 1 1
Bacillus_anthracis_str._Sterne 1 1
Bacillus_anthracis_str._Ames 1 1
Chlorobium_phaeobacteroides_BS1 1 1
Echinicola_vietnamensis_DSM_17526 1 1
Emticicia_oligotrophica_DSM_17448 2 2
Bacteroides_xylanisolvens_XB1A 1 1
Bacteroides_fragilis_638R 2 2
Bacteroides_fragilis_NCTC_9343 2 2
Psychroflexus_torquis_ATCC_700755 3 3
Singulisphaera_acidiphila_DSM_18658 40 27
Borrelia_garinii_NMJW1 1 1
Borrelia_garinii_BgVir 1 1
Borrelia_afzelii_HLJ01 2 2
Borrelia_afzelii_PKo 2 2
Borrelia_burgdorferi_CA382 1 1
Borrelia_burgdorferi_JD1 1 1
Borrelia_burgdorferi_N40 1 1
Borrelia_burgdorferi_ZS7 1 1
Borrelia_miyamotoi_LB-2001 2 2
Treponema_pedis_str._T_A4 1 1
Thermotoga_maritima_MSB8 3 3
Arcobacter_butzleri_7h1h 2 2
Arcobacter_butzleri_ED-1 2 2
Campylobacter_jejuni_Waterborne_C.jejuni_Outbreak 2 2
Campylobacter_jejuni_RM1221 2 2
Campylobacter_jejuni_subsp._jejuni_00-2544 2 2
Campylobacter_jejuni_subsp._jejuni_00-2538 2 2
Campylobacter_jejuni_subsp._jejuni_00-2426 2 2
Campylobacter_jejuni_subsp._jejuni_00-2425 2 2
Campylobacter_jejuni_subsp._jejuni_PT14 2 2
Campylobacter_jejuni_subsp._jejuni_ICDCCJ07001 3 3
Campylobacter_jejuni_subsp._jejuni_S3 2 2
Campylobacter_jejuni_subsp._jejuni_M1 2 2
Campylobacter_jejuni_subsp._jejuni_IA3902 2 2
Campylobacter_jejuni_subsp._jejuni_81116 2 2
Campylobacter_jejuni_subsp._jejuni_81-176 2 2
Campylobacter_jejuni_subsp._jejuni_NCTC_11168-BN148 2 2
Campylobacter_jejuni_subsp._jejuni_NCTC_11168_=_ATCC_700819 2 2
Campylobacter_coli_76339 2 2
Campylobacter_coli_15-537360 2 2
Campylobacter_coli_CVM_N29710 2 2
Helicobacter_cetorum_MIT_99-5656 1 1
Helicobacter_pylori_BM012S 1 1
Helicobacter_pylori_BM012A 1 1
Helicobacter_pylori_SouthAfrica20 1 1
Helicobacter_pylori_UM298 1 1
Helicobacter_pylori_UM066 1 1
Helicobacter_pylori_UM037 1 1
Helicobacter_pylori_UM299 1 1
Helicobacter_pylori_UM032 1 1
Helicobacter_pylori_OK310 1 1
Helicobacter_pylori_OK113 1 1
Helicobacter_pylori_Rif2 1 1
Helicobacter_pylori_Rif1 1 1
Helicobacter_pylori_HUP-B14 1 1
Helicobacter_pylori_PeCan18 1 1
Helicobacter_pylori_Shi169 1 1
Helicobacter_pylori_Shi112 1 1
Helicobacter_pylori_Shi417 1 1
Helicobacter_pylori_XZ274 1 1
Helicobacter_pylori_Aklavik117 1 1
Helicobacter_pylori_SNT49 1 1
Helicobacter_pylori_Puno135 1 1
Helicobacter_pylori_Puno120 1 1
Helicobacter_pylori_ELS37 1 1
Helicobacter_pylori_Gambia94/24 1 1
Helicobacter_pylori_SouthAfrica7 1 1
Helicobacter_pylori_India7 1 1
Helicobacter_pylori_Lithuania75 1 1
Helicobacter_pylori_2017 1 1
Helicobacter_pylori_2018 1 1
Helicobacter_pylori_908 1 1
Helicobacter_pylori_F57 1 1
Helicobacter_pylori_F30 1 1
Helicobacter_pylori_F16 1 1
Helicobacter_pylori_Sat464 1 1
Helicobacter_pylori_Cuz20 1 1
Helicobacter_pylori_PeCan4 1 1
Helicobacter_pylori_SJM180 1 1
Helicobacter_pylori_B8 1 1
Helicobacter_pylori_52 1 1
Helicobacter_pylori_v225d 1 1
Helicobacter_pylori_83 1 1
Helicobacter_pylori_35A 1 1
Helicobacter_pylori_P12 1 1
Helicobacter_pylori_G27 1 1
Helicobacter_pylori_Shi470 1 1
Helicobacter_pylori_HPAG1 1 1
Helicobacter_pylori_51 1 1
Helicobacter_pylori_F32 1 1
Helicobacter_pylori_26695 1 1
Helicobacter_pylori_26695 1 1
Desulfobacula_toluolica_Tol2 2 2
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 2 2
Sorangium_cellulosum_So0157-2 14 7
Anaeromyxobacter_sp._K 1 1
Anaeromyxobacter_dehalogenans_2CP-C 2 1
Myxococcus_stipitatus_DSM_14675 8 7
Burkholderia_thailandensis_MSMB121 1 1
Burkholderia_pseudomallei_MSHR305 1 1
Burkholderia_pseudomallei_NCTC_13179 1 1
Burkholderia_pseudomallei_BPC006 1 1
Burkholderia_pseudomallei_1026b 1 1
Burkholderia_pseudomallei_668 1 1
Burkholderia_pseudomallei_1710b 1 1
Burkholderia_pseudomallei_K96243 1 1
Burkholderia_mallei_NCTC_10229 1 1
Burkholderia_mallei_NCTC_10247 1 1
Burkholderia_mallei_ATCC_23344 1 1
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 7 4
Phaeobacter_gallaeciensis_DSM_17395 1 1
Phaeobacter_gallaeciensis_DSM_26640 1 1
Magnetospirillum_gryphiswaldense_MSR-1_v2 1 1
Rhodospirillum_rubrum_ATCC_11170 2 1
Gluconacetobacter_diazotrophicus_PAl_5 1 1
Gluconobacter_oxydans_H24 1 1
Methylobacterium_extorquens_DM4 1 1
Methylobacterium_extorquens_PA1 1 1
Hyphomicrobium_nitrativorans_NL23 2 2
Hyphomicrobium_denitrificans_1NES1 1 1
Bradyrhizobium_japonicum_USDA_6 1 1
Bartonella_vinsonii_subsp._berkhoffii_str._Winnie 1 1
Aeromonas_hydrophila_ML09-119 1 1
Vibrio_fischeri_ES114 1 1
Vibrio_sp._EJY3 1 1
Idiomarina_loihiensis_GSL_199 1 1
Shewanella_baltica_BA175 1 1
Shewanella_baltica_OS223 1 1
Shewanella_sp._MR-7 1 1
Thalassolituus_oleivorans_MIL-1 1 1
Thioflavicoccus_mobilis_8321 2 1
Dickeya_dadantii_3937 2 1
Pseudomonas_syringae_pv._phaseolicola_1448A 1 1
Pseudomonas_stutzeri_CCUG_29243 1 1
Pseudomonas_stutzeri_DSM_4166 1 1
Pseudomonas_stutzeri_RCH2 1 1
Pseudomonas_stutzeri_ATCC_17588_=_LMG_11199 1 1
Pseudomonas_putida_NBRC_14164 1 1
Pseudomonas_putida_BIRD-1 1 1
Pseudomonas_putida_KT2440 1 1
Pseudomonas_putida_GB-1 1 1
Pseudomonas_protegens_CHA0 3 2
Pseudomonas_fluorescens_F113 1 1
Pseudomonas_fluorescens_R124 1 1
Pseudomonas_fluorescens_Pf0-1 1 1
Pseudomonas_mendocina_NK-01 1 1
Pseudomonas_aeruginosa_SCV20265 1 1
Pseudomonas_aeruginosa_MTB-1 1 1
Pseudomonas_aeruginosa_LES431 1 1
Pseudomonas_aeruginosa_RP73 1 1
Pseudomonas_aeruginosa_B136-33 1 1
Pseudomonas_aeruginosa_PA1R 1 1
Pseudomonas_aeruginosa_PA1 1 1
Pseudomonas_aeruginosa_DK2 1 1
Pseudomonas_aeruginosa_NCGM2.S1 1 1
Pseudomonas_aeruginosa_M18 1 1
Pseudomonas_aeruginosa_LESB58 1 1
Pseudomonas_aeruginosa_PA7 1 1
Pseudomonas_aeruginosa_PAO1 1 1
Acinetobacter_lwoffii__SH145 1 1
Methylophaga_sp._JAM7 2 2
Methanomethylovorans_hollandica_DSM_15978 1 1
Methanoregula_formicica_Methanoregula_formicicum_SMSP 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   337 308
Pan_troglodytes_69_2.1.4   (Chimpanzee)   296 262
Gorilla_gorilla_69_3.1   (Western gorilla)   312 285
Pongo_abelii_69_2   (Sumatran orangutan)   298 272
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   292 263
Macaca_mulatta_69_1   (Rhesus monkey)   313 287
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   319 290
Otolemur_garnettii_69_3   (Small-eared galago)   318 283
Microcebus_murinus_69_1   (Gray mouse lemur)   255 236
Rattus_norvegicus_69_3.4   (Norway rat)   300 270
Mus_musculus_69_38   (House mouse)   321 292
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   288 249
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   285 260
Cavia_porcellus_69_3   (Domestic guinea pig)   307 276
Oryctolagus_cuniculus_69_2   (Rabbit)   304 272
Ochotona_princeps_69   (American pika)   255 237
Tupaia_belangeri_69   (Northern tree shrew)   246 228
Sus_scrofa_69_10.2   (Pig)   326 300
Bos_taurus_69_3.1   (Cattle)   298 267
Vicugna_pacos_69_1   (Alpaca)   202 183
Tursiops_truncatus_69_1   (Bottlenose dolphin)   301 273
Mustela_putorius_furo_69_1.0   (Domestic ferret)   314 285
Ailuropoda_melanoleuca_69_1   (Giant panda)   315 284
Canis_familiaris_69_3.1   (Dog)   334 292
Felis_catus_69   (Domestic cat)   252 228
Equus_caballus_69_2   (Horse)   311 279
Myotis_lucifugus_69_2.0   (Little brown bat)   326 289
Pteropus_vampyrus_69_1   (Large flying fox)   303 272
Sorex_araneus_69_1   (European shrew)   222 201
Erinaceus_europaeus_69   (Western European hedgehog)   242 221
Procavia_capensis_69_1   (Cape rock hyrax)   287 262
Loxodonta_africana_69_3   (African savanna elephant)   308 279
Echinops_telfairi_69   (Small Madagascar hedgehog)   249 234
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   235 218
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   206 189
Macropus_eugenii_69_1.0   (Tammar wallaby)   275 248
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   314 279
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   325 294
Ornithorhynchus_anatinus_69_5   (Platypus)   288 271
Petromyzon_marinus_69_7.0   (Sea lamprey)   173 159
Meleagris_gallopavo_69_2   (Turkey)   275 248
Gallus_gallus_69_2   (Chicken)   269 236
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   294 266
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   283 250
Anolis_carolinensis_69_2.0   (Green anole)   288 257
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   307 275
Latimeria_chalumnae_69_1   (Coelacanth)   312 275
Gadus_morhua_69_1   (Atlantic cod)   316 287
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   325 296
Takifugu_rubripes_69_4   (Torafugu)   323 292
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   324 291
Oryzias_latipes_69_1   (Japanese medaka)   305 268
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   334 298
Oreochromis_niloticus_69_1.0   (Nile tilapia)   321 288
Danio_rerio_69_9   (Zebrafish)   336 307
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   180 167
Ciona_intestinalis_69   (Vase tunicate)   244 222
Drosophila_melanogaster_69_5   (Fruit fly)   214 192
Caenorhabditis_elegans_69_215   (Roundworm)   167 151
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   124 111
Arabidopsis_thaliana_10   (Thale cress)   275 253

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   1378 1295
Homo_sapiens__(NCBI_version)   (Human)   514 464
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   316 284
Heliconius_numata__(Incomplete) 104 104
Loa_loa_v3.3_(Request)   (Eye worm)   189 169
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   195 187
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   166 150
Moniliophthora_perniciosa_FA553__(Genome_survey) 88 88
Encephalitozoon_intestinalis__(endoparasite) 52 52
Encephalitozoon_cuniculi_(endoparasite) 47 45
Picea_sitchensis__(Incomplete)   (Sitka spruce)   18 18
Lotus_japonicus__(Early_assembly) 287 280
Malus_x_domestica_(Duplicate)   (Apple)   606 588
Ricinus_communis__(Early_assembly)   (Castor bean)   247 227
Nicotiana_benthamiana_0.4.4_(Early_draft) 496 466
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   282 267
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   293 275
Phoenix_dactylifera__(Early_draft)   (Date palm)   229 224
Guillardia_theta_(nucleomorph) 15 14
NCBI_plasmid_sequences_(Plasmids) 124 71
NCBI_viral_sequences_(Viral) 28 28
PDB_chains_(SCOP_1.75)_(PDB) 21 19
UniProt__viral_sequences_(Viral) 11 11
TargetDB__(Targets) 1318 1220
Protein_Data_Bank_(all_PDB_sequenc) 1554 1253
Core_Eukaryotic_Genes_458_(CEGMA) 116 99
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 1740 1738
Protozoadb_2010_08_(Protozoadb) 5080 4709
STRING_v9.0.5_(STRING) 26092 23662
NCBI_2017_08_genome 319540 286080
Uniprot_2018_03_genome 350512 318914

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.