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Domain combinations for Pectin lyase-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Pectin lyase-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   33 20
Pan_troglodytes_76_2.1.4   (Chimpanzee)   14 8
Gorilla_gorilla_76_3.1   (Western gorilla)   15 10
Pongo_abelii_76_2   (Sumatran orangutan)   14 7
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   13 7
Papio_anubis_76   (Olive baboon)   15 8
Macaca_mulatta_76_1   (Rhesus monkey)   17 9
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   35 23
Otolemur_garnettii_76_3   (Small-eared galago)   14 8
Microcebus_murinus_76_1   (Gray mouse lemur)   12 7
Rattus_norvegicus_76_5.0   (Norway rat)   15 8
Mus_musculus_76_38   (House mouse)   24 13
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   10 6
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   14 7
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   12 7
Cavia_porcellus_76_3   (Domestic guinea pig)   14 8
Oryctolagus_cuniculus_76_2   (Rabbit)   16 8
Ochotona_princeps_76   (American pika)   13 8
Tupaia_belangeri_76   (Northern tree shrew)   11 7
Sus_scrofa_76_10.2   (Pig)   13 8
Bos_taurus_76_3.1   (Cattle)   13 7
Ovis_aries_76_3.1   (Sheep)   17 10
Vicugna_pacos_76_1   (Alpaca)   9 7
Tursiops_truncatus_76_1   (Bottlenose dolphin)   12 7
Mustela_putorius_furo_76_1.0   (Domestic ferret)   14 7
Ailuropoda_melanoleuca_76_1   (Giant panda)   15 9
Canis_familiaris_76_3.1   (Dog)   18 9
Felis_catus_76_6.2   (Domestic cat)   17 10
Equus_caballus_76_2   (Horse)   23 13
Myotis_lucifugus_76_2.0   (Little brown bat)   17 9
Pteropus_vampyrus_76_1   (Large flying fox)   12 8
Sorex_araneus_76_1   (European shrew)   8 6
Erinaceus_europaeus_76   (Western European hedgehog)   11 6
Procavia_capensis_76_1   (Cape rock hyrax)   12 7
Loxodonta_africana_76_3   (African savanna elephant)   20 10
Echinops_telfairi_76   (Small Madagascar hedgehog)   11 6
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   17 9
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   7 4
Macropus_eugenii_76_1.0   (Tammar wallaby)   13 8
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   18 11
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   15 8
Ornithorhynchus_anatinus_76_5   (Platypus)   14 11
Saccoglossus_kowalevskii_v3.0 57 43
Petromyzon_marinus_76_7.0   (Sea lamprey)   13 6
Meleagris_gallopavo_76_2   (Turkey)   10 7
Gallus_gallus_76_4   (Chicken)   9 6
Anas_platyrhynchos_76_1.0   (Mallard)   10 6
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   8 5
Ficedula_albicollis_76_1.0   (Collared flycatcher)   8 5
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   13 10
Anolis_carolinensis_76_2.0   (Green anole)   13 8
Xenopus_laevis_   (African clawed frog)   12 8
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   14 7
Latimeria_chalumnae_76_1   (Coelacanth)   24 16
Lepisosteus_oculatus_76   (Spotted gar)   15 11
Gadus_morhua_76_1   (Atlantic cod)   13 7
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   12 6
Takifugu_rubripes_76_4   (Torafugu)   15 8
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   14 7
Oryzias_latipes_76_1   (Japanese medaka)   14 7
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   12 6
Poecilia_formosa_76   (Amazon molly)   13 6
Oreochromis_niloticus_76_1.0   (Nile tilapia)   21 10
Astyanax_mexicanus_76   (Mexican tetra)   13 6
Danio_rerio_76_9   (Zebrafish)   38 20
Oikopleura_dioica 13 10
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   25 16
Ciona_intestinalis_76   (Vase tunicate)   12 8
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   7 5
Adineta_vaga 46 41
Octopus_bimaculoides_280 7 5
Crassostrea_gigas_22   (Pacific oyster)   24 15
Lottia_gigantea_   (Owl limpet)   15 11
Helobdella_robusta_ 14 8
Capitella_sp._I_ 19 12
Danaus_plexippus_OGS1.0   (Monarch butterfly)   10 6
Heliconius_melpomene_   (Postman butterfly)   6 3
Bombyx_mori_   (Domestic silkworm)   8 5
Nasonia_vitripennis_   (Jewel wasp)   5 2
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   6 4
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   7 4
Linepithema_humile_v1.1   (Argentine ant)   7 4
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   9 4
Solenopsis_invicta_v.2.2.3   (Red fire ant)   8 4
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   9 5
Atta_cephalotes_v1.1 9 7
Camponotus_floridanus_v3.3   (Florida carpenter ant)   9 4
Lucilia_cuprina   (Australian sheep blowfly)   3 1
Drosophila_grimshawi_1.3 5 3
Drosophila_willistoni_1.3 6 4
Drosophila_pseudoobscura_2.13 6 4
Drosophila_persimilis_1.3 6 4
Drosophila_suzukii 7 4
Drosophila_yakuba_1.3 6 4
Drosophila_simulans_1.3 5 3
Drosophila_sechellia_1.3 6 4
Drosophila_melanogaster_76_5   (Fruit fly)   12 9
Drosophila_erecta_1.3 6 4
Drosophila_ananassae_1.3 5 3
Drosophila_virilis_1.2 5 2
Drosophila_mojavensis_1.3 5 2
Megaselia_scalaris_22 4 2
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   8 4
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   7 3
Anopheles_darlingi_22   (American malaria mosquito)   7 4
Anopheles_gambiae_49_3j   (African malaria mosquito)   6 2
Tribolium_castaneum_3.0   (Red flour beetle)   7 3
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   6 2
Acyrthosiphon_pisum_   (Pea aphid)   5 3
Rhodnius_prolixus_22 7 3
Daphnia_pulex_   (Common water flea)   9 3
Strigamia_maritima_22 15 6
Sarcoptes_scabiei 8 3
Tetranychus_urticae_   (Two-spotted spider mite)   6 3
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   7 4
Pristionchus_pacificus_ 7 5
Meloidogyne_incognita_   (Southern root-knot nematode)   37 36
Meloidogyne_hapla_ 20 18
Onchocerca_volvulus_22 6 3
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   7 6
Caenorhabditis_japonica_ 20 14
Caenorhabditis_brenneri_ 13 5
Caenorhabditis_remanei_ 12 4
Caenorhabditis_elegans_76_235   (Roundworm)   11 4
Caenorhabditis_briggsae_2 11 5
Trichinella_spiralis_22 3 1
Schistosoma_mansoni_ 1 1
Mnemiopsis_leidyi   (Sea walnut)   4 4
Thelohanellus_kitauei 3 3
Acropora_digitifera_v1.0 41 30
Nematostella_vectensis_1.0   (Starlet sea anemone)   28 22
Hydra_vulgaris 5 3
Amphimedon_queenslandica 172 156
Trichoplax_adhaerens_ 9 5
Proterospongia_sp._ATCC_50818_ 15 13
Monosiga_brevicollis_ 45 33
Sphaeroforma_arctica_JP610_ 77 73
Capsaspora_owczarzaki_ATCC_30864_ 48 26
Mortierella_verticillata_NRRL_6337_ 6 6
Phycomyces_blakesleeanus_ 15 15
Rhizopus_oryzae_RA_99-880_ 25 25
Mucor_circinelloides_ 3 3
Rhizomucor_miehei_CAU432_ 7 7
Malassezia_globosa_CBS_7966_ 6 4
Sporisorium_reilianum_22 6 5
Ustilago_maydis_ 5 4
Mixia_osmundae_IAM_14324_v1.0 6 6
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 19 19
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 15 15
Melampsora_laricis-populina_ 15 15
Rhodotorula_graminis_WP1_v1.0 5 5
Sporobolomyces_roseus_IAM_13481_ 3 3
Microbotryum_violaceum_22 17 17
Sphaerobolus_stellatus_v1.0 29 28
Piloderma_croceum_F_1598_v1.0 19 15
Serpula_lacrymans_var._lacrymans_S7.9_ 20 15
Coniophora_puteana 24 20
Hydnomerulius_pinastri_v2.0 18 15
Paxillus_rubicundulus_Ve08.2h10_v1.0 6 5
Pisolithus_microcarpus_441_v1.0 6 4
Pisolithus_tinctorius_Marx_270_v1.0 6 4
Scleroderma_citrinum_Foug_A_v1.0 8 6
Coprinopsis_cinerea_okayama7_130_v3 10 9
Pleurotus_ostreatus_   (Oyster mushroom)   25 23
Amanita_thiersii_Skay4041_v1.0 14 13
Amanita_muscaria_Koide_v1.0   (Fly agaric)   3 2
Galerina_marginata_v1.0 31 28
Hebeloma_cylindrosporum_h7_v2.0 11 9
Laccaria_bicolor_S238N-H82_ 17 15
Agaricus_bisporus_var._bisporus_ 14 13
Schizophyllum_commune_ 20 18
Stereum_hirsutum_FP-91666_SS1__v1.0 33 31
Heterobasidion_annosum_ 16 15
Gloeophyllum_trabeumv1.0 17 15
Punctularia_strigosozonata_v1.0 30 27
Sebacina_vermifera_MAFF_305830_v1.0 23 22
Fomitiporia_mediterranea_v1.0 24 23
Tulasnella_calospora_AL13/4D_v1.0 52 49
Postia_placenta_ 30 23
Wolfiporia_cocos_MD-104_SS10__v1.0 17 14
Fomitopsis_pinicolav1.0 21 18
Fomitopsis_pinicola_FP-58527_SS1_v3.0 21 18
Phanerochaete_chrysosporium_RP-78_2.1 11 9
Dichomitus_squalens 15 13
Trametes_versicolor_v1.0 17 15
Tremella_mesenterica_   (Witches' butter)   3 3
Daldinia_eschscholzii_EC12_v1.0 16 12
Apiospora_montagnei_NRRL_25634_v1.0 27 22
Magnaporthe_poae_ATCC_64411_22 28 19
Magnaporthe_grisea_70-15_ 16 12
Podospora_anserina_ 21 15
Sporotrichum_thermophile_ATCC_42464_ 21 16
Thielavia_terrestris_NRRL_8126_ 23 16
Chaetomium_globosum_CBS_148.51_ 35 27
Neurospora_tetrasperma_ 18 12
Neurospora_discreta_FGSC_8579_ 15 10
Neurospora_crassa_OR74A_ 18 12
Cryphonectria_parasitica_   (Chestnut blight fungus)   42 36
Verticillium_albo-atrum_VaMs.102_ 61 55
Verticillium_dahliae_VdLs.17_ 61 53
Acremonium_alcalophilumv_1.0 16 12
Glomerella_graminicola_22 33 29
Fusarium_graminearum_ 40 33
Nectria_haematococca_mpVI_ 61 53
Fusarium_oxysporum_f._sp._lycopersici_4286_ 53 47
Fusarium_verticillioides_7600_ 50 42
Trichoderma_asperellum_CBS_433.97_v1.0 27 19
Trichoderma_atroviride_ 23 19
Trichoderma_citrinoviride_v1.0 29 19
Trichoderma_reesei_1.2 17 11
Trichoderma_virens_Gv29-8_ 30 20
Trichoderma_longibrachiatum_ATCC_18648_v1.0 14 10
Trichoderma_harzianum_CBS_226.95_v1.0 28 18
Amorphotheca_resinae_v1.0   (Creosote fungus)   10 7
Botrytis_cinerea_B05.10_ 42 38
Sclerotinia_sclerotiorum_ 34 30
Blumeria_graminis_22 2 1
Didymella_exigua_CBS_183.55_v1.0 50 44
Leptosphaeria_maculans_22 32 29
Setosphaeria_turcica_v1.0 26 23
Cochliobolus_miyabeanus_ATCC_44560_v1.0 26 23
Cochliobolus_victoriae_FI3_v1.0 28 24
Cochliobolus_carbonum_26-R-13_v1.0 27 23
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   26 23
Alternaria_brassicicola_ 43 37
Cochliobolus_lunatus_m118_v2.0 27 24
Pyrenophora_teres_f._teres_22 24 20
Pyrenophora_tritici-repentis_ 24 20
Stagonospora_nodorum_ 26 20
Mycosphaerella_graminicola_IPO323_ 13 10
Zasmidium_cellare_ATCC_36951_v1.0 29 23
Dothistroma_septosporum 16 13
Septoria_musiva_v1.0 13 11
Mycosphaerella_fijiensis_CIRAD86_ 19 15
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 30 25
Paracoccidioides_brasiliensis_Pb18_ 8 4
Coccidioides_posadasii_RMSCC_3488_ 2 1
Coccidioides_immitis_RS_ 2 1
Ajellomyces_dermatitidis_SLH14081_ 6 3
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 7 4
Microsporum_canis_CBS_113480_ 3 2
Trichophyton_equinum_CBS_127.97_ 2 1
Trichophyton_verrucosum_HKI_0517_ 2 1
Arthroderma_benhamiae_CBS_112371_ 2 1
Trichophyton_tonsurans_CBS_112818_ 2 1
Trichophyton_rubrum_CBS_118892_ 2 1
Uncinocarpus_reesii_1704_ 4 2
Aspergillus_zonatus_v1.0 18 15
Penicillium_chrysogenum_Wisconsin_54-1255_ 19 16
Penicillium_chrysogenum_v1.0 19 16
Aspergillus_acidus_v1.0 37 33
Aspergillus_fumigatus_Af293 44 35
Aspergillus_brasiliensis_v1.0 37 35
Aspergillus_nidulans_FGSC_A4_ 43 36
Aspergillus_sydowii_v1.0 36 33
Aspergillus_versicolor_v1.0 39 36
Aspergillus_glaucus 14 11
Aspergillus_carbonarius_ITEM_5010_ 43 36
Neosartorya_fischeri_NRRL_181_ 55 41
Aspergillus_terreus_NIH2624_ 30 26
Aspergillus_tubingensis_v1.0 37 34
Aspergillus_wentii_v1.0 31 27
Aspergillus_oryzae_RIB40_ 49 46
Aspergillus_niger_22 36 33
Aspergillus_niger_ATCC_1015_ 31 29
Aspergillus_flavus_NRRL3357_ 51 47
Aspergillus_clavatus_NRRL_1_ 19 12
Penicillium_marneffei_ATCC_18224_ 28 21
Tuber_melanosporum_Mel28_22 8 6
Tuber_melanosporum_Vittad_   (Perigord truffle)   9 7
Kluyveromyces_thermotolerans_CBS_6340 2 2
Lachancea_kluyveri_ 1 1
Kluyveromyces_waltii 1 1
Ashbya_gossypii_ATCC_10895_ 1 1
Saccharomyces_mikatae_MIT 2 2
Saccharomyces_paradoxus_MIT 1 1
Saccharomyces_cerevisiae_76   (Baker's yeast)   1 1
Saccharomyces_bayanus_MIT 4 4
Catenaria_anguillulae_PL171_v1.0 8 5
Allomyces_macrogynus_ATCC_38327_ 16 12
Spizellomyces_punctatus_DAOM_BR117_ 7 4
Dictyostelium_discoideum 35 26
Dictyostelium_purpureum_ 33 23
Entamoeba_dispar_1.2 9 4
Entamoeba_invadens_1.2 32 30
Entamoeba_histolytica_1 7 4
Selaginella_moellendorffii_ 109 108
Pinus_taeda   (Loblolly pine)   371 330
Picea_abies   (Norway spruce)   138 131
Eucalyptus_grandis_v201   (Rose gum)   141 140
Theobroma_cacao_B97-61/B2_v1   (Cacao)   114 112
Gossypium_raimondii_v221 292 290
Citrus_clementina_v165 149 149
Citrus_sinensis_v154   (Sweet orange)   162 162
Thellungiella_halophila_v173 137 137
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   271 269
Capsella_rubella_v183 172 172
Arabidopsis_lyrata_   (Lyrate rockcress)   175 174
Arabidopsis_thaliana_10   (Thale cress)   175 175
Carica_papaya_   (Papaya)   118 118
Medicago_truncatula_   (Barrel medic)   251 250
Phaseolus_vulgaris_v186   (French bean)   181 179
Glycine_max_v109   (Soybean)   289 289
Cucumis_sativus_v122   (Cucumber)   150 150
Fragaria_vesca_   (Wild strawberry)   155 149
Malus_domestica_v196   (Apple)   308 302
Prunus_persica_v139   (Peach)   168 164
Linum_usitatissimum_v200   (Flax)   262 252
Manihot_esculenta_v147   (Cassava)   230 228
Populus_trichocarpa_v156   (Black cottonwood)   217 217
Vitis_vinifera_   (Wine grape)   140 135
Mimulus_guttatus_v140   (Spotted monkey flower)   168 167
Solanum_lycopersicum_v.2.3   (Tomato)   165 163
Solanum_tuberosum_   (Potato)   212 209
Actinidia_chinensis_Hongyang_ 167 165
Aquilegia_coerulea_v195 159 156
Triticum_urartu_22 85 84
Triticum_aestivum_22   (Bread wheat)   250 250
Aegilops_tauschii_22 104 100
Brachypodium_distachyon_   (Stiff brome)   87 87
Oryza_barthii_22   (African wild rice)   109 107
Oryza_meridionalis_22 117 110
Oryza_glumaepatula_22 116 114
Oryza_glaberrima   (African rice)   80 80
Oryza_punctata_22 107 104
Oryza_nivara_22 122 118
Oryza_brachyantha_22   (Malo sina)   100 97
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   118 118
Oryza_sativa_v193   (Rice)   117 117
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   72 71
Panicum_virgatum_v202   (Switchgrass)   180 180
Setaria_italica_v164   (Foxtail millet)   99 97
Zea_mays_subsp._mays_   (Maize)   161 160
Zea_mays_v181   (Maize)   174 173
Sorghum_bicolor_   (Sorghum)   94 93
Musa_balbisiana   (Balbis banana)   155 152
Musa_acuminata_22   (Wild Malaysian banana)   154 153
Amborella_trichopoda_22 124 124
Physcomitrella_patens 89 89
Coccomyxa_subellipsoidea_sp._C-169_v2 17 16
Asterochloris_sp._Cgr/DA1pho_v1.0 6 6
Chlorella_variabilis_sp._NC64A_ 46 38
Chlorella_vulgaris_ 15 14
Volvox_carteri_f._nagariensis_ 49 31
Volvox_carteri_v199 40 26
Chlamydomonas_reinhardtii_4.0 48 31
Ostreococcus_sp._RCC809_ 15 11
Ostreococcus_lucimarinus_CCE9901_ 8 6
Ostreococcus_tauri_ 5 4
Bathycoccus_prasinos_ 6 5
Micromonas_sp._RCC299_ 12 10
Micromonas_pusilla_CCMP1545_v3.0 11 10
Porphyridium_purpureum_02_2012 1 1
Thecamonas_trahens_ATCC_50062_ 170 121
Bigelowiella_natans_CCMP2755_22 43 33
Giardia_lamblia_2.3 2 1
Cyanophora_paradoxa_ 175 137
Leishmania_mexicana_2.4 17 6
Leishmania_major_strain_Friedlin_ 15 6
Leishmania_infantum_JPCM5_2.4 13 5
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 12 5
Trypanosoma_vivax_ 16 4
Trypanosoma_cruzi_strain_CL_Brener 124 99
Trypanosoma_congolense_2.4 21 10
Trypanosoma_brucei_gambiense_v4.1 19 6
Trypanosoma_brucei_TREU927_v4.1 19 6
Ectocarpus_siliculosus 141 118
Aureococcus_anophagefferens_ 46 38
Albugo_laibachii_22 5 5
Pythium_iwayamai_DAOM_BR242034_22 9 8
Pythium_arrhenomanes_ATCC_12531_22 17 13
Pythium_ultimum_v1.7-2 40 37
Pythium_aphanidermatum_DAOM_BR444_22 30 29
Pythium_irregulare_DAOM_BR486_22 20 19
Pythium_vexans_DAOM_BR484_22 31 27
Phytophthora_ramorum_1.1   (Sudden oak death agent)   82 75
Phytophthora_sojae_1.1 103 95
Phytophthora_infestans_T30-4_ 102 92
Phytophthora_capsici_ 99 86
Hyaloperonospora_arabidopsidis_22 23 21
Phaeodactylum_tricornutumCCAP_1055/1 16 16
Fragilariopsis_cylindrus 25 23
Thalassiosira_pseudonana_CCMP1335 6 6
Perkinsus_marinus_ATCC_50983_ 2 2
Paramecium_tetraurelia_ 72 62
Tetrahymena_thermophila_SB210_1_ 280 262
Ichthyophthirius_multifiliis_strain_G5_ 12 9
Plasmodium_falciparum_3D7_ 1 1
Plasmodium_yoelii_ssp._yoelii_1_ 2 2
Plasmodium_chabaudi_ 1 1
Plasmodium_berghei_ANKA_ 1 1
Symbiodinium_minutum_clade_B1_v1.2 59 50
Naegleria_gruberi_ 67 56
Trichomonas_vaginalis_ 217 172
Guillardia_theta_CCMP2712_v1.0_ 104 76
Emiliania_huxleyi_CCMP1516_ 156 147
Thermobaculum_terrenum_ATCC_BAA-798 5 4
Leptolyngbya_sp._PCC_7376 80 37
Pseudanabaena_sp._PCC_7367 25 16
Acaryochloris_marina_MBIC11017 58 24
Synechocystis_sp._PCC_6803 1 1
Thermosynechococcus_sp._NK55 3 2
Thermosynechococcus_elongatus_BP-1 16 4
Synechococcus_sp._PCC_7502 3 3
Synechococcus_sp._PCC_6312 4 4
Microcoleus_sp._PCC_7113 98 42
Trichodesmium_erythraeum_IMS101 38 13
Geitlerinema_sp._PCC_7407 16 8
Cyanothece_sp._PCC_8802 6 4
Gloeocapsa_sp._PCC_7428 26 11
Halothece_sp._PCC_7418 10 7
Microcystis_aeruginosa_NIES-843 7 4
Gloeobacter_violaceus_PCC_7421 3 3
Rivularia_sp._PCC_7116 168 56
Calothrix_sp._PCC_7507 31 15
Anabaena_variabilis_ATCC_29413 46 23
'Nostoc_azollae'_0708 5 3
Nostoc_sp._PCC_7107 54 23
Nostoc_punctiforme_PCC_73102 38 22
Nostoc_sp._PCC_7120 65 28
Nostoc_sp._PCC_7524 35 15
Anabaena_sp._90 9 6
Mycoplasma_pulmonis_UAB_CTIP 3 2
Conexibacter_woesei_DSM_14684 17 17
Eggerthella_sp._YY7918 5 5
Slackia_heliotrinireducens_DSM_20476 1 1
Olsenella_uli_DSM_7084 2 2
Coriobacterium_glomerans_PW2 1 1
Rubrobacter_xylanophilus_DSM_9941 3 3
Ilumatobacter_coccineus 23 17
Acidimicrobium_ferrooxidans_DSM_10331 1 1
Thermobispora_bispora_DSM_43833 3 3
Nakamurella_multipartita_DSM_44233 7 7
Acidothermus_cellulolyticus_11B 4 4
Modestobacter_marinus 5 5
Blastococcus_saxobsidens_DD2 3 3
Geodermatophilus_obscurus_DSM_43160 1 1
Kineococcus_radiotolerans_SRS30216 4 4
Catenulispora_acidiphila_DSM_44928 31 30
Stackebrandtia_nassauensis_DSM_44728 8 8
Frankia_symbiont_of_Datisca_glomerata 6 5
Frankia_sp._EAN1pec 8 8
Frankia_alni_ACN14a 5 3
Thermobifida_fusca_YX 3 3
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 8 7
Thermomonospora_curvata_DSM_43183 2 2
Streptosporangium_roseum_DSM_43021 14 13
Kitasatospora_setae_KM-6054 15 12
Streptomyces_coelicolor_A3(2) 20 18
Streptomyces_sp._PAMC26508 15 12
Streptomyces_flavogriseus_ATCC_33331 17 13
Streptomyces_sp._SirexAA-E 16 13
Streptomyces_griseus_subsp._griseus_NBRC_13350 12 8
Streptomyces_bingchenggensis_BCW-1 45 37
Streptomyces_violaceusniger_Tu_4113 29 26
Streptomyces_avermitilis_MA-4680 17 14
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 13 7
Streptomyces_scabiei_87.22 25 21
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 16 13
Actinosynnema_mirum_DSM_43827 17 15
Saccharomonospora_viridis_DSM_43017 1 1
Pseudonocardia_dioxanivorans_CB1190 6 6
Saccharopolyspora_erythraea_NRRL_2338 5 4
Amycolatopsis_mediterranei_U32 30 29
Kribbella_flavida_DSM_17836 14 12
Nocardioides_sp._JS614 2 2
Propionibacterium_propionicum_F0230a 1 1
Propionibacterium_acnes_SK137 1 1
Microlunatus_phosphovorus_NM-1 4 4
Salinispora_arenicola_CNS-205 33 32
Salinispora_tropica_CNB-440 35 31
Verrucosispora_maris_AB-18-032 13 13
Micromonospora_sp._L5 19 17
Micromonospora_aurantiaca_ATCC_27029 18 16
Actinoplanes_sp._N902-109 23 21
Actinoplanes_sp._SE50/110 28 28
Actinoplanes_missouriensis_431 28 28
Tsukamurella_paurometabola_DSM_20162 1 1
Rhodococcus_jostii_RHA1 1 1
Rhodococcus_opacus_B4 1 1
Mycobacterium_sp._JLS 4 3
Mycobacterium_vanbaalenii_PYR-1 1 1
Mycobacterium_gilvum_PYR-GCK 1 1
Corynebacterium_efficiens_YS-314 1 1
Corynebacterium_glutamicum_R 3 3
Sanguibacter_keddieii_DSM_10542 3 3
Kytococcus_sedentarius_DSM_20547 1 1
Beutenbergia_cavernae_DSM_12333 13 10
Leifsonia_xyli_subsp._xyli_str._CTCB07 1 1
Microbacterium_testaceum_StLB037 7 7
Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382 6 6
Jonesia_denitrificans_DSM_20603 3 2
Brachybacterium_faecium_DSM_4810 2 2
Isoptericola_variabilis_225 3 3
Xylanimonas_cellulosilytica_DSM_15894 1 1
Cellulomonas_flavigena_DSM_20109 5 5
Cellulomonas_fimi_ATCC_484 12 12
[Cellvibrio]_gilvus_ATCC_13127 2 2
Arthrobacter_phenanthrenivorans_Sphe3 4 4
Arthrobacter_chlorophenolicus_A6 9 8
Arthrobacter_aurescens_TC1 7 4
Rothia_mucilaginosa_DY-18 3 3
Arthrobacter_sp._Rue61a 6 4
Arthrobacter_sp._FB24 1 1
Renibacterium_salmoninarum_ATCC_33209 2 1
Bifidobacterium_longum_subsp._longum_JDM301 1 1
Bifidobacterium_animalis_subsp._lactis_Bl-04 1 1
Bifidobacterium_bifidum_S17 4 3
Bifidobacterium_adolescentis_ATCC_15703 2 2
Actinomyces_sp._F0330 1 1
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 8 5
Dehalococcoides_sp._BAV1 1 1
Anaerolinea_thermophila_UNI-1 2 2
Thermomicrobium_roseum_DSM_5159 7 4
Sphaerobacter_thermophilus_DSM_20745 9 6
Herpetosiphon_aurantiacus_DSM_785 22 16
Roseiflexus_sp._RS-1 18 11
Roseiflexus_castenholzii_DSM_13941 24 15
Chloroflexus_sp._MS-G 11 6
Chloroflexus_sp._Y-400-fl 17 12
Chloroflexus_aggregans_DSM_9485 17 12
Chloroflexus_aurantiacus_J-10-fl 16 12
Truepera_radiovictrix_DSM_17093 3 3
Deinococcus_gobiensis_I-0 2 2
Deinococcus_deserti_VCD115 6 4
Deinococcus_maricopensis_DSM_21211 5 4
Deinococcus_geothermalis_DSM_11300 2 2
Deinococcus_proteolyticus_MRP 1 1
Deinococcus_radiodurans_R1 3 2
Oceanithermus_profundus_DSM_14977 7 7
Marinithermus_hydrothermalis_DSM_14884 1 1
Meiothermus_silvanus_DSM_9946 1 1
Meiothermus_ruber_DSM_1279 3 3
Thermus_sp._CCB_US3_UF1 1 1
Thermus_scotoductus_SA-01 1 1
Veillonella_parvula_DSM_2008 3 3
Megasphaera_elsdenii_DSM_20460 1 1
Acidaminococcus_intestini_RyC-MR95 2 2
Acidaminococcus_fermentans_DSM_20731 4 4
Selenomonas_sputigena_ATCC_35185 4 4
Selenomonas_ruminantium_subsp._lactilytica_TAM6421 5 5
Erysipelothrix_rhusiopathiae_str._Fujisawa 2 2
Natranaerobius_thermophilus_JW/NM-WN-LF 4 2
Clostridiales_genomosp._BVAB3_str._UPII9-5 4 4
Clostridium_clariflavum_DSM_19732 4 4
Clostridium_cellulolyticum_H10 10 9
Clostridium_thermocellum_ATCC_27405 7 6
Ethanoligenens_harbinense_YUAN-3 1 1
Faecalibacterium_prausnitzii 4 4
Ruminococcus_sp. 2 2
Ruminococcus_albus_7 13 11
Thermaerobacter_marianensis_DSM_12885 1 1
Sulfobacillus_acidophilus_DSM_10332 2 1
butyrate-producing_bacterium_SS3/4 2 2
Pelotomaculum_thermopropionicum_SI 1 1
Desulfosporosinus_acidiphilus_SJ4 1 1
Dehalobacter_sp._DCA 1 1
Dehalobacter_sp._CF 4 4
Syntrophobotulus_glycolicus_DSM_8271 1 1
Desulfitobacterium_hafniense_Y51 4 4
Desulfitobacterium_dehalogenans_ATCC_51507 1 1
Desulfotomaculum_acetoxidans_DSM_771 2 2
Desulfotomaculum_ruminis_DSM_2154 1 1
Acetobacterium_woodii_DSM_1030 1 1
Eubacterium_eligens_ATCC_27750 13 11
Eubacterium_limosum_KIST612 9 5
Clostridium_difficile_630 3 3
Filifactor_alocis_ATCC_35896 1 1
Clostridium_saccharolyticum_WM1 4 4
Clostridium_phytofermentans_ISDg 20 16
Clostridium_lentocellum_DSM_5427 7 7
[Ruminococcus]_obeum 1 1
Eubacterium_rectale_M104/1 3 2
Eubacterium_rectale_ATCC_33656 1 1
Coprococcus_sp._ART55/1 1 1
Roseburia_hominis_A2-183 4 4
Roseburia_intestinalis 9 7
Butyrivibrio_proteoclasticus_B316 10 9
Butyrivibrio_fibrisolvens 2 2
Syntrophomonas_wolfei_subsp._wolfei_str._Goettingen 1 1
Heliobacterium_modesticaldum_Ice1 1 1
Alkaliphilus_metalliredigens_QYMF 1 1
Clostridium_sp._BNL1100 11 8
Clostridium_ljungdahlii_DSM_13528 1 1
Clostridium_beijerinckii_NCIMB_8052 2 2
Clostridium_perfringens_ATCC_13124 1 1
Clostridium_cellulovorans_743B 28 23
Clostridium_acetobutylicum_ATCC_824 14 12
Mahella_australiensis_50-1_BON 8 7
Caldicellulosiruptor_obsidiansis_OB47 4 4
Caldicellulosiruptor_kronotskyensis_2002 9 8
Caldicellulosiruptor_hydrothermalis_108 7 6
Caldicellulosiruptor_owensensis_OL 5 4
Caldicellulosiruptor_lactoaceticus_6A 7 6
Caldicellulosiruptor_kristjanssonii_177R1B 5 4
Caldicellulosiruptor_saccharolyticus_DSM_8903 3 3
Caldicellulosiruptor_bescii_DSM_6725 5 5
Thermoanaerobacterium_xylanolyticum_LX-11 2 2
Thermoanaerobacterium_thermosaccharolyticum_DSM_571 2 2
Coprothermobacter_proteolyticus_DSM_5265 1 1
Thermoanaerobacter_italicus_Ab9 2 2
Halanaerobium_praevalens_DSM_2228 1 1
Carnobacterium_sp._17-4 1 1
Carnobacterium_sp._WN1359 1 1
Tetragenococcus_halophilus_NBRC_12172 1 1
Melissococcus_plutonius_DAT561 5 4
Enterococcus_sp._7L76 2 2
Enterococcus_hirae_ATCC_9790 1 1
Enterococcus_faecium_Aus0004 4 4
Enterococcus_faecalis_62 5 4
Leuconostoc_sp._C2 1 1
Leuconostoc_kimchii_IMSNU_11154 1 1
Leuconostoc_citreum_KM20 1 1
Lactobacillus_casei_ATCC_334 1 1
Lactobacillus_kefiranofaciens_ZW3 2 2
Lactobacillus_crispatus_ST1 3 3
Lactobacillus_rhamnosus_Lc_705 3 3
Lactobacillus_johnsonii_FI9785 3 3
Lactobacillus_amylovorus_GRL1118 2 2
Lactobacillus_reuteri_DSM_20016 1 1
Lactobacillus_gasseri_ATCC_33323 1 1
Lactobacillus_plantarum_JDM1 2 2
Lactobacillus_helveticus_DPC_4571 1 1
Lactobacillus_buchneri_NRRL_B-30929 2 2
Lactobacillus_buchneri 3 3
Lactobacillus_brevis_ATCC_367 3 3
Lactobacillus_acidophilus_30SC 2 2
Streptococcus_gallolyticus_UCN34 3 3
Streptococcus_pasteurianus_ATCC_43144 1 1
Streptococcus_dysgalactiae_subsp._equisimilis_GGS_124 1 1
Streptococcus_infantarius_subsp._infantarius_CJ18 2 2
Streptococcus_macedonicus_ACA-DC_198 1 1
Streptococcus_uberis_0140J 1 1
Streptococcus_parauberis_KCTC_11537 1 1
Streptococcus_parasanguinis_ATCC_15912 1 1
Streptococcus_pyogenes_str._Manfredo 1 1
Streptococcus_pneumoniae_P1031 2 1
Streptococcus_mutans_NN2025 1 1
Streptococcus_suis_P1/7 2 2
Streptococcus_salivarius_57.I 1 1
Exiguobacterium_sp._MH3 8 4
Exiguobacterium_sp._AT1b 2 2
Exiguobacterium_sibiricum_255-15 4 3
Kyrpidia_tusciae_DSM_2912 1 1
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_DSM_446 1 1
Brevibacillus_brevis_NBRC_100599 2 2
Paenibacillus_sp._JDR-2 23 21
Paenibacillus_terrae_HPL-003 13 12
Paenibacillus_mucilaginosus_3016 36 31
Paenibacillus_polymyxa_M1 13 11
Listeria_innocua_Clip11262 2 2
Solibacillus_silvestris_StLB046 5 2
Geobacillus_thermoglucosidasius_C56-YS93 1 1
Lysinibacillus_sphaericus_C3-41 5 4
Oceanobacillus_iheyensis_HTE831 3 2
Anoxybacillus_flavithermus_WK1 1 1
Geobacillus_sp._WCH70 2 2
Geobacillus_thermodenitrificans_NG80-2 2 2
Halobacillus_halophilus_DSM_2266 3 3
Bacillus_sp._JS 7 6
Bacillus_sp._1NLA3E 3 3
Bacillus_amyloliquefaciens_FZB42 7 6
Bacillus_atrophaeus_1942 10 8
Bacillus_subtilis_subsp._subtilis_str._168 11 8
Bacillus_licheniformis_DSM_13_=_ATCC_14580 13 11
Bacillus_halodurans_C-125 4 4
Bacillus_weihenstephanensis_KBAB4 2 2
Bacillus_anthracis_str._A0248 2 2
Bacillus_clausii_KSM-K16 7 6
Bacillus_cellulosilyticus_DSM_2522 3 2
Bacillus_pumilus_SAFR-032 6 5
Bacillus_megaterium_DSM_319 1 1
Bacillus_coagulans_2-6 1 1
Macrococcus_caseolyticus_JCSC5402 1 1
Staphylococcus_pseudintermedius_HKU10-03 1 1
Staphylococcus_saprophyticus_subsp._saprophyticus_ATCC_15305 1 1
Staphylococcus_lugdunensis_HKU09-01 2 2
Staphylococcus_haemolyticus_JCSC1435 2 2
Staphylococcus_epidermidis_RP62A 1 1
Staphylococcus_carnosus_subsp._carnosus_TM300 4 3
Staphylococcus_aureus_subsp._aureus_JH1 1 1
Staphylococcus_aureus 1 1
Candidatus_Cloacamonas_acidaminovorans 6 4
Gemmatimonas_aurantiaca_T-27 1 1
Melioribacter_roseus_P3M 31 30
Ignavibacterium_album_JCM_16511 8 8
Pelodictyon_phaeoclathratiforme_BU-1 1 1
Chlorobium_luteolum_DSM_273 2 2
Chlorobium_chlorochromatii_CaD3 3 3
Chlorobium_phaeobacteroides_DSM_266 7 1
Chlorobium_phaeovibrioides_DSM_265 2 2
Chlorobium_limicola_DSM_245 1 1
Chlorobaculum_parvum_NCIB_8327 2 1
Chloroherpeton_thalassium_ATCC_35110 1 1
Haliscomenobacter_hydrossis_DSM_1100 27 22
Saprospira_grandis_str._Lewin 5 4
Niastella_koreensis_GR20-10 61 50
Chitinophaga_pinensis_DSM_2588 29 22
Salinibacter_ruber_M8 5 4
Rhodothermus_marinus_DSM_4252 14 13
Flexibacter_litoralis_DSM_6794 3 3
Belliella_baltica_DSM_15883 6 6
Cyclobacterium_marinum_DSM_745 22 21
Marivirga_tractuosa_DSM_4126 7 7
Fibrella_aestuarina 17 16
Leadbetterella_byssophila_DSM_17132 6 6
Dyadobacter_fermentans_DSM_18053 25 20
Cytophaga_hutchinsonii_ATCC_33406 14 6
Spirosoma_linguale_DSM_74 22 22
Runella_slithyformis_DSM_19594 12 12
Parabacteroides_distasonis_ATCC_8503 7 5
Tannerella_forsythia_ATCC_43037 11 11
Paludibacter_propionicigenes_WB4 3 3
Prevotella_melaninogenica_ATCC_25845 2 2
Prevotella_intermedia_17 6 6
Prevotella_denticola_F0289 3 3
Prevotella_ruminicola_23 11 11
Porphyromonas_asaccharolytica_DSM_20707 3 3
Porphyromonas_gingivalis_ATCC_33277 2 2
Alistipes_finegoldii_DSM_17242 7 7
Bacteroides_salanitronis_DSM_18170 27 25
Bacteroides_helcogenes_P_36-108 2 2
Bacteroides_vulgatus_ATCC_8482 28 28
Bacteroides_thetaiotaomicron_VPI-5482 31 30
Bacteroides_fragilis_YCH46 6 6
Pedobacter_saltans_DSM_12145 69 65
Solitalea_canadensis_DSM_3403 6 5
Pedobacter_heparinus_DSM_2366 34 33
Sphingobacterium_sp._21 22 20
Fluviicola_taffensis_DSM_16823 13 9
Owenweeksia_hongkongensis_DSM_17368 27 17
Zunongwangia_profunda_SM-A87 1 1
Krokinobacter_sp._4H-3-7-5 4 3
Gramella_forsetii_KT0803 6 4
Lacinutrix_sp._5H-3-7-4 4 3
Maribacter_sp._HTCC2170 8 8
Robiginitalea_biformata_HTCC2501 7 6
Croceibacter_atlanticus_HTCC2559 11 3
Aequorivita_sublithincola_DSM_14238 17 5
Zobellia_galactanivorans 34 30
Muricauda_ruestringensis_DSM_13258 5 4
Cellulophaga_algicola_DSM_14237 20 18
Cellulophaga_lytica_DSM_7489 10 8
Flavobacteriaceae_bacterium_3519-10 10 9
Polaribacter_sp._MED152 8 6
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 4 4
Ornithobacterium_rhinotracheale_DSM_15997 2 2
Capnocytophaga_canimorsus_Cc5 3 3
Capnocytophaga_ochracea_DSM_7271 1 1
Weeksella_virosa_DSM_16922 4 3
Flavobacterium_indicum_GPTSA100-9 2 2
Flavobacterium_psychrophilum_JIP02/86 2 2
Flavobacterium_branchiophilum_FL-15 4 4
Flavobacterium_columnare_ATCC_49512 5 5
Flavobacterium_johnsoniae_UW101 25 24
Fibrobacter_succinogenes_subsp._succinogenes_S85 14 14
Waddlia_chondrophila_WSU_86-1044 1 1
Parachlamydia_acanthamoebae_UV-7 2 2
Simkania_negevensis_Z 14 7
Chlamydophila_pecorum_E58 4 3
Chlamydophila_pneumoniae_TW-183 5 4
Chlamydophila_caviae_GPIC 1 1
Chlamydophila_felis_Fe/C-56 1 1
Chlamydophila_abortus_S26/3 1 1
Chlamydia_psittaci_01DC11 2 2
Chlamydia_trachomatis_B/Jali20/OT 1 1
Phycisphaera_mikurensis_NBRC_102666 8 8
Isosphaera_pallida_ATCC_43644 19 11
Planctomyces_brasiliensis_DSM_5305 13 12
Planctomyces_limnophilus_DSM_3776 11 10
Rhodopirellula_baltica_SH_1 30 16
Pirellula_staleyi_DSM_6068 14 9
Methylacidiphilum_infernorum_V4 3 3
Coraliomargarita_akajimensis_DSM_45221 9 9
Opitutus_terrae_PB90-1 42 27
Akkermansia_muciniphila_ATCC_BAA-835 9 7
Fretibacterium_fastidiosum 2 1
Turneriella_parva_DSM_21527 3 3
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._L550 2 2
Leptospira_interrogans_serovar_Lai_str._IPAV 7 7
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 4 4
Borrelia_bissettii_DN127 1 1
Borrelia_afzelii_PKo 1 1
Borrelia_burgdorferi_B31 1 1
Borrelia_duttonii_Ly 1 1
Spirochaeta_smaragdinae_DSM_11293 2 2
Sphaerochaeta_pleomorpha_str._Grapes 4 3
Sphaerochaeta_globus_str._Buddy 3 3
Sphaerochaeta_coccoides_DSM_17374 2 2
Spirochaeta_caldaria_DSM_7334 7 7
Treponema_azotonutricium_ZAS-9 24 10
Treponema_primitia_ZAS-2 18 10
Treponema_brennaborense_DSM_12168 8 7
Treponema_succinifaciens_DSM_2489 2 2
Treponema_denticola_ATCC_35405 10 7
Spirochaeta_africana_DSM_8902 1 1
Spirochaeta_thermophila_DSM_6192 4 4
Calditerrivibrio_nitroreducens_DSM_19672 4 2
Denitrovibrio_acetiphilus_DSM_12809 1 1
Marinitoga_piezophila_KA3 2 1
Petrotoga_mobilis_SJ95 1 1
Mesotoga_prima_MesG1.Ag.4.2 5 3
Kosmotoga_olearia_TBF_19.5.1 4 4
Thermosipho_melanesiensis_BI429 1 1
Thermosipho_africanus_TCF52B 1 1
Thermotoga_lettingae_TMO 1 1
Thermotoga_thermarum_DSM_5069 3 3
Thermotoga_sp._RQ2 3 3
Thermotoga_petrophila_RKU-1 1 1
Thermotoga_maritima_MSB8 2 2
Thermovibrio_ammonificans_HB-1 3 3
Persephonella_marina_EX-H1 2 2
Aquifex_aeolicus_VF5 1 1
Hydrogenobacter_thermophilus_TK-6 2 2
Elusimicrobium_minutum_Pei191 1 1
Dictyoglomus_turgidum_DSM_6724 5 5
Dictyoglomus_thermophilum_H-6-12 3 3
Candidatus_Chloracidobacterium_thermophilum_B 1 1
Candidatus_Solibacter_usitatus_Ellin6076 28 25
Granulicella_tundricola_MP5ACTX9 14 14
Granulicella_mallensis_MP5ACTX8 20 20
Candidatus_Koribacter_versatilis_Ellin345 13 13
Terriglobus_saanensis_SP1PR4 19 17
Terriglobus_roseus_DSM_18391 20 18
Acidobacterium_capsulatum_ATCC_51196 9 7
Thermodesulfovibrio_yellowstonii_DSM_11347 1 1
Candidatus_Nitrospira_defluvii 15 13
Streptobacillus_moniliformis_DSM_12112 13 12
Sebaldella_termitidis_ATCC_33386 11 11
Ilyobacter_polytropus_DSM_2926 1 1
Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586 4 4
Candidatus_Methylomirabilis_oxyfera 2 2
candidate_division_WWE3_bacterium_RAAC2_WWE3_1 2 2
candidate_division_SR1_bacterium_RAAC1_SR1_1 9 3
Candidatus_Saccharibacteria_bacterium_RAAC3_TM7_1 2 1
Candidatus_Saccharimonas_aalborgensis 1 1
Acidithiobacillus_ferrivorans_SS3 4 1
Bdellovibrio_bacteriovorus_HD100 1 1
Nitratifractor_salsuginis_DSM_16511 5 5
Sulfurospirillum_barnesii_SES-3 4 4
Arcobacter_sp._L 2 2
Arcobacter_nitrofigilis_DSM_7299 5 5
Arcobacter_butzleri_RM4018 1 1
Campylobacter_hominis_ATCC_BAA-381 2 2
Campylobacter_lari_RM2100 1 1
Campylobacter_curvus_525.92 2 2
Campylobacter_concisus_13826 7 7
Campylobacter_sp._03-427 2 2
Campylobacter_fetus_subsp._fetus_82-40 3 3
uncultured_Sulfuricurvum_sp._RIFRC-1 1 1
Sulfurimonas_autotrophica_DSM_16294 3 3
Sulfurimonas_denitrificans_DSM_1251 6 6
Wolinella_succinogenes_DSM_1740 2 2
Helicobacter_cetorum_MIT_00-7128 1 1
Helicobacter_mustelae_12198 2 2
Helicobacter_cinaedi_PAGU611 1 1
Nitratiruptor_sp._SB155-2 3 3
Sulfurovum_sp._NBC37-1 2 2
Desulfobacca_acetoxidans_DSM_11109 4 4
Syntrophus_aciditrophicus_SB 5 5
Desulfomonile_tiedjei_DSM_6799 2 2
Syntrophobacter_fumaroxidans_MPOB 6 6
Desulfurivibrio_alkaliphilus_AHT2 1 1
Desulfotalea_psychrophila_LSv54 4 4
Desulfobulbus_propionicus_DSM_2032 3 3
Desulfatibacillum_alkenivorans_AK-01 18 10
Desulfobacterium_autotrophicum_HRM2 8 4
Desulfococcus_oleovorans_Hxd3 22 10
Desulfomicrobium_baculatum_DSM_4028 2 2
Desulfovibrio_piezophilus 4 4
Desulfovibrio_aespoeensis_Aspo-2 4 4
Desulfovibrio_magneticus_RS-1 9 5
Desulfovibrio_salexigens_DSM_2638 1 1
Desulfovibrio_africanus_str._Walvis_Bay 10 8
Hippea_maritima_DSM_10411 1 1
Geobacter_daltonii_FRC-32 19 9
Geobacter_sp._M21 3 3
Geobacter_uraniireducens_Rf4 10 8
Geobacter_lovleyi_SZ 2 2
Geobacter_bemidjiensis_Bem 2 2
Geobacter_sulfurreducens_KN400 8 5
Geobacter_metallireducens_GS-15 10 7
Pelobacter_propionicus_DSM_2379 3 3
Pelobacter_carbinolicus_DSM_2380 3 3
Babela_massiliensis 1 1
Haliangium_ochraceum_DSM_14365 16 15
Sorangium_cellulosum_'So_ce_56' 45 38
Anaeromyxobacter_sp._Fw109-5 7 7
Anaeromyxobacter_dehalogenans_2CP-1 7 7
Stigmatella_aurantiaca_DW4/3-1 21 20
Corallococcus_coralloides_DSM_2259 28 26
Myxococcus_xanthus_DK_1622 11 11
Myxococcus_fulvus_HW-1 11 11
Dechloromonas_aromatica_RCB 4 4
Thauera_sp._MZ1T 2 2
Azoarcus_sp._KH32C 2 2
Azoarcus_sp._BH72 3 3
Aromatoleum_aromaticum_EbN1 2 2
Dechlorosoma_suillum_PS 4 4
Pseudogulbenkiania_sp._NH8B 1 1
Laribacter_hongkongensis_HLHK9 3 2
Chromobacterium_violaceum_ATCC_12472 6 6
Neisseria_meningitidis_alpha14 7 7
Neisseria_meningitidis_FAM18 5 5
Neisseria_lactamica_020-06 13 13
Neisseria_gonorrhoeae_NCCP11945 8 8
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 5 5
Methylibium_petroleiphilum_PM1 2 2
Rubrivivax_gelatinosus_IL144 8 6
Leptothrix_cholodnii_SP-6 5 5
Burkholderia_rhizoxinica_HKI_454 2 2
Burkholderia_phytofirmans_PsJN 6 6
Burkholderia_phymatum_STM815 10 10
Burkholderia_xenovorans_LB400 7 7
Ralstonia_eutropha_JMP134 7 7
Cupriavidus_taiwanensis_LMG_19424 3 3
Cupriavidus_metallidurans_CH34 9 7
Cupriavidus_necator_N-1 2 2
Ralstonia_eutropha_H16 3 3
Ralstonia_pickettii_12D 4 4
Ralstonia_solanacearum_CFBP2957 9 9
Polynucleobacter_necessarius_subsp._asymbioticus_QLW-P1DMWA-1 1 1
Burkholderia_sp._RPE64 14 14
Burkholderia_sp._CCGE1002 19 9
Burkholderia_thailandensis_E264 9 7
Burkholderia_pseudomallei_1106a 7 7
Burkholderia_mallei_SAVP1 3 3
Burkholderia_ambifaria_AMMD 17 10
Burkholderia_cenocepacia_HI2424 17 7
Burkholderia_multivorans_ATCC_17616 18 8
Burkholderia_vietnamiensis_G4 17 13
Burkholderia_gladioli_BSR3 23 19
Burkholderia_glumae_BGR1 14 14
Alicycliphilus_denitrificans_K601 1 1
Delftia_sp._Cs1-4 4 3
Delftia_acidovorans_SPH-1 5 4
Polaromonas_naphthalenivorans_CJ2 4 4
Variovorax_paradoxus_S110 8 6
Rhodoferax_ferrireducens_T118 2 2
Acidovorax_ebreus_TPSY 1 1
Acidovorax_sp._JS42 1 1
Acidovorax_citrulli_AAC00-1 6 6
Acidovorax_avenae_subsp._avenae_ATCC_19860 6 5
Comamonas_testosteroni_CNB-2 1 1
Herminiimonas_arsenicoxydans 3 3
Collimonas_fungivorans_Ter331 15 9
Janthinobacterium_sp._Marseille 19 19
Herbaspirillum_seropedicae_SmR1 7 7
Pusillimonas_sp._T7-7 10 8
Advenella_kashmirensis_WT001 1 1
Taylorella_asinigenitalis_MCE3 3 2
Taylorella_equigenitalis_MCE9 3 2
Bordetella_petrii_DSM_12804 5 5
Bordetella_avium_197N 10 10
Bordetella_pertussis_Tohama_I 18 12
Bordetella_parapertussis_12822 21 12
Bordetella_bronchiseptica_RB50 28 15
Achromobacter_xylosoxidans_A8 20 11
Achromobacter_xylosoxidans 22 19
Thiobacillus_denitrificans_ATCC_25259 3 2
Nitrosospira_multiformis_ATCC_25196 10 5
Nitrosomonas_sp._Is79A3 1 1
Nitrosomonas_eutropha_C91 1 1
Nitrosomonas_europaea_ATCC_19718 1 1
Sideroxydans_lithotrophicus_ES-1 2 1
Methylotenera_versatilis_301 3 3
Methylobacillus_flagellatus_KT 3 3
Magnetococcus_marinus_MC-1 3 3
Parvularcula_bermudensis_HTCC2503 3 3
Asticcacaulis_excentricus_CB_48 11 11
Brevundimonas_subvibrioides_ATCC_15264 10 9
Caulobacter_sp._K31 8 6
Caulobacter_crescentus_NA1000 4 4
Caulobacter_segnis_ATCC_21756 6 4
Phenylobacterium_zucineum_HLK1 3 3
Erythrobacter_litoralis_HTCC2594 6 5
Sphingopyxis_alaskensis_RB2256 5 4
Novosphingobium_sp._PP1Y 5 5
Novosphingobium_aromaticivorans_DSM_12444 5 5
Sphingobium_sp._SYK-6 6 3
Sphingobium_japonicum_UT26S 5 3
Sphingobium_chlorophenolicum_L-1 23 8
Sphingomonas_sp._MM-1 24 5
Sphingomonas_wittichii_RW1 1 1
Maricaulis_maris_MCS10 5 4
Hirschia_baltica_ATCC_49814 9 7
Hyphomonas_neptunium_ATCC_15444 1 1
Dinoroseobacter_shibae_DFL_12 5 5
Phaeobacter_gallaeciensis_2.10 1 1
Pseudovibrio_sp._FO-BEG1 14 8
Jannaschia_sp._CCS1 3 3
Ruegeria_sp._TM1040 1 1
Ruegeria_pomeroyi_DSS-3 3 3
Ketogulonicigenium_vulgare_Y25 1 1
Ketogulonigenium_vulgarum_WSH-001 1 1
Roseobacter_litoralis_Och_149 8 8
Roseobacter_denitrificans_OCh_114 3 3
Rhodobacter_sphaeroides_ATCC_17029 1 1
Rhodobacter_capsulatus_SB_1003 2 2
Paracoccus_denitrificans_PD1222 4 4
Rhodospirillum_photometricum_DSM_122 2 2
Tistrella_mobilis_KA081020-065 10 8
Magnetospirillum_magneticum_AMB-1 2 2
Rhodospirillum_centenum_SW 9 9
Rhodospirillum_rubrum_F11 3 2
Azospirillum_lipoferum_4B 20 11
Azospirillum_sp._B510 14 11
Azospirillum_brasilense_Sp245 20 18
Granulibacter_bethesdensis_CGDNIH1 3 2
Gluconacetobacter_diazotrophicus_PAl_5 5 5
Acidiphilium_multivorum_AIU301 9 5
Acidiphilium_cryptum_JF-5 6 4
Acetobacter_pasteurianus_IFO_3283-01 1 1
Polymorphum_gilvum_SL003B-26A1 4 3
Micavibrio_aeruginosavorus_ARL-13 12 3
alpha_proteobacterium_HIMB5 6 2
Starkeya_novella_DSM_506 7 3
Xanthobacter_autotrophicus_Py2 4 3
Azorhizobium_caulinodans_ORS_571 36 9
Methylobacterium_chloromethanicum_CM4 6 6
Methylobacterium_extorquens_AM1 5 5
Methylobacterium_sp._4-46 11 11
Methylobacterium_populi_BJ001 10 4
Methylobacterium_nodulans_ORS_2060 12 12
Methylobacterium_radiotolerans_JCM_2831 5 5
Parvibaculum_lavamentivorans_DS-1 7 4
Ochrobactrum_anthropi_ATCC_49188 29 11
Brucella_microti_CCM_4915 18 5
Brucella_pinnipedialis_B2/94 12 3
Brucella_canis_ATCC_23365 2 2
Brucella_suis_ATCC_23445 2 2
Brucella_melitensis_ATCC_23457 1 1
Brucella_ovis_ATCC_25840 9 3
Brucella_abortus_S19 18 6
Sinorhizobium_fredii_NGR234 4 4
Sinorhizobium_medicae_WSM419 6 5
Sinorhizobium_meliloti_AK83 8 7
Genome_sequence_of_Rhizobium_sp._strain_IRBG74 6 6
Rhizobium_etli_CIAT_652 13 12
Rhizobium_leguminosarum_bv._viciae_3841 16 12
Agrobacterium_tumefaciens_str._C58 6 6
Agrobacterium_radiobacter_K84 4 4
Agrobacterium_sp._H13-3 8 7
Agrobacterium_vitis_S4 7 7
Mesorhizobium_sp._BNC1 22 11
Mesorhizobium_opportunistum_WSM2075 7 5
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 11 8
Mesorhizobium_loti_MAFF303099 7 6
Methylocella_silvestris_BL2 5 5
Beijerinckia_indica_subsp._indica_ATCC_9039 8 5
Pelagibacterium_halotolerans_B2 4 4
Rhodomicrobium_vannielii_ATCC_17100 2 2
Hyphomicrobium_sp._MC1 5 4
Hyphomicrobium_denitrificans_ATCC_51888 9 8
Oligotropha_carboxidovorans_OM4 4 3
Rhodopseudomonas_palustris_BisA53 12 12
Nitrobacter_winogradskyi_Nb-255 1 1
Nitrobacter_hamburgensis_X14 15 9
Bradyrhizobium_japonicum_USDA_110 13 12
Bradyrhizobium_sp._ORS_278 14 10
Methylocystis_sp._SC2 1 1
Bartonella_tribocorum_CIP_105476 23 19
Bartonella_clarridgeiae_73 12 12
Bartonella_henselae_str._Houston-1 17 15
Bartonella_grahamii_as4aup 27 22
Bartonella_quintana_str._Toulouse 7 6
Bartonella_bacilliformis_KC583 5 5
Saccharophagus_degradans_2-40 37 34
Teredinibacter_turnerae_T7901 13 12
Cellvibrio_japonicus_Ueda107 14 14
Haemophilus_somnus_129PT 1 1
Gallibacterium_anatis_UMN179 5 5
Pasteurella_multocida_subsp._multocida_str._3480 3 3
Haemophilus_parasuis_SH0165 2 2
Haemophilus_ducreyi_35000HP 4 4
Haemophilus_parainfluenzae_T3T1 1 1
Haemophilus_influenzae_PittEE 4 4
Actinobacillus_succinogenes_130Z 2 2
Actinobacillus_pleuropneumoniae_serovar_5b_str._L20 2 2
Oceanimonas_sp._GK1 1 1
Tolumonas_auensis_DSM_9187 3 3
Vibrio_sp._Ex25 1 1
Vibrio_parahaemolyticus_RIMD_2210633 1 1
Vibrio_furnissii_NCTC_11218 2 2
Vibrio_vulnificus_MO6-24/O 1 1
Vibrio_cholerae_O395 1 1
Photobacterium_profundum_SS9 2 2
Psychromonas_ingrahamii_37 3 3
Psychromonas_sp._CNPT3 1 1
Ferrimonas_balearica_DSM_9799 9 9
Shewanella_piezotolerans_WP3 2 2
Shewanella_loihica_PV-4 3 3
Shewanella_halifaxensis_HAW-EB4 4 4
Shewanella_sediminis_HAW-EB3 3 3
Shewanella_denitrificans_OS217 3 2
Shewanella_pealeana_ATCC_700345 3 3
Shewanella_oneidensis_MR-1 2 2
Shewanella_baltica_OS185 1 1
Shewanella_woodyi_ATCC_51908 8 8
Shewanella_sp._MR-4 2 2
Shewanella_amazonensis_SB2B 2 2
Shewanella_violacea_DSS12 2 2
Shewanella_frigidimarina_NCIMB_400 2 1
Shewanella_putrefaciens_CN-32 1 1
Colwellia_psychrerythraea_34H 2 2
Pseudoalteromonas_sp._SM9913 2 2
Pseudoalteromonas_atlantica_T6c 8 5
Pseudoalteromonas_haloplanktis_TAC125 2 1
Glaciecola_sp._4H-3-7+YE-5 7 5
Glaciecola_nitratireducens_FR1064 1 1
Marinobacter_adhaerens_HP15 1 1
Marinobacter_sp._BSs20148 2 2
Marinobacter_hydrocarbonoclasticus_ATCC_49840 2 2
Marinobacter_aquaeolei_VT8 2 2
Alteromonas_sp._SN2 8 4
Alteromonas_macleodii_str._'Deep_ecotype' 4 4
Hahella_chejuensis_KCTC_2396 19 17
Alcanivorax_borkumensis_SK2 1 1
Marinomonas_posidonica_IVIA-Po-181 5 5
Marinomonas_sp._MWYL1 6 5
Marinomonas_mediterranea_MMB-1 5 4
Chromohalobacter_salexigens_DSM_3043 2 2
Methylomicrobium_alcaliphilum 2 2
Methylomonas_methanica_MC09 2 2
Methylococcus_capsulatus_str._Bath 3 2
Rhodanobacter_denitrificans 1 1
Frateuria_aurantia_DSM_6220 4 3
Pseudoxanthomonas_spadix_BD-a59 1 1
Pseudoxanthomonas_suwonensis_11-1 2 2
Stenotrophomonas_maltophilia_K279a 16 8
Xylella_fastidiosa_M23 5 5
Xanthomonas_axonopodis_pv._citri_str._306 20 10
Xanthomonas_albilineans_GPE_PC73 7 6
Xanthomonas_oryzae_pv._oryzae_PXO99A 16 9
Xanthomonas_campestris_pv._campestris_str._B100 20 11
Halothiobacillus_neapolitanus_c2 4 3
Alkalilimnicola_ehrlichii_MLHE-1 2 2
Thioalkalivibrio_sulfidophilus_HL-EbGr7 5 5
Thioalkalivibrio_sp._K90mix 1 1
Halorhodospira_halophila_SL1 1 1
Thiocystis_violascens_DSM_198 3 2
Nitrosococcus_watsonii_C-113 1 1
Nitrosococcus_halophilus_Nc4 2 2
Nitrosococcus_oceani_ATCC_19707 1 1
Legionella_longbeachae_NSW150 3 3
Legionella_pneumophila_str._Corby 1 1
gamma_proteobacterium_HdN1 1 1
Photorhabdus_asymbiotica 10 8
Photorhabdus_luminescens_subsp._laumondii_TTO1 11 9
Xenorhabdus_bovienii_SS-2004 5 4
Xenorhabdus_nematophila_ATCC_19061 2 2
Providencia_stuartii_MRSN_2154 1 1
Proteus_mirabilis_HI4320 7 7
Edwardsiella_ictaluri_93-146 5 4
Edwardsiella_tarda_EIB202 4 4
Rahnella_sp._Y9602 17 16
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 13 12
Yersinia_pseudotuberculosis_IP_31758 17 17
Yersinia_pestis_Pestoides_F 15 15
Yersinia_enterocolitica_subsp._enterocolitica_8081 11 11
Serratia_sp._AS12 10 9
Serratia_sp._ATCC_39006 16 15
Serratia_plymuthica_AS9 10 9
Serratia_proteamaculans_568 10 9
Dickeya_dadantii_Ech703 13 13
Dickeya_zeae_Ech1591 20 20
Pectobacterium_wasabiae_WPP163 17 17
Pectobacterium_sp._SCC3193 16 16
Pectobacterium_atrosepticum_SCRI1043 17 17
Pectobacterium_carotovorum_subsp._carotovorum_PC1 20 20
Sodalis_glossinidius_str._'morsitans' 1 1
Pantoea_sp._At-9b 8 8
Pantoea_vagans_C9-1 11 11
Pantoea_ananatis_LMG_20103 8 8
Erwinia_tasmaniensis_Et1/99 6 6
Erwinia_sp._Ejp617 8 8
Erwinia_billingiae_Eb661 9 9
Erwinia_pyrifoliae_Ep1/96 7 7
Erwinia_amylovora_ATCC_49946 7 7
Escherichia_blattae_DSM_4481 6 6
Cronobacter_turicensis_z3032 9 9
Cronobacter_sakazakii_ES15 6 6
Candidatus_Hamiltonella_defensa_5AT_(Acyrthosiphon_pisum) 17 9
Enterobacteriaceae_bacterium_strain_FGI_57 13 11
Shigella_sonnei_Ss046 5 5
Shigella_flexneri_5_str._8401 6 6
Shigella_dysenteriae_Sd197 8 8
Shigella_boydii_CDC_3083-94 7 7
Salmonella_bongori_NCTC_12419 6 6
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594 7 6
Klebsiella_oxytoca_E718 12 10
Klebsiella_variicola_At-22 5 5
Klebsiella_pneumoniae_NTUH-K2044 2 2
Enterobacter_aerogenes_KCTC_2190 9 8
Escherichia_fergusonii_ATCC_35469 8 7
Escherichia_coli_'BL21-Gold(DE3)pLysS_AG' 10 9
Enterobacter_sp._R4-368 10 10
Enterobacter_sp._638 8 8
Enterobacter_asburiae_LF7a 9 9
Enterobacter_cloacae_subsp._dissolvens_SDM 6 6
Citrobacter_rodentium_ICC168 25 23
Citrobacter_koseri_ATCC_BAA-895 5 5
Azotobacter_vinelandii_DJ 13 11
Pseudomonas_sp._TKP 8 8
Pseudomonas_sp._UW4 3 3
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 9 9
Pseudomonas_entomophila_L48 20 9
Pseudomonas_syringae_pv._tomato_str._DC3000 12 11
Pseudomonas_stutzeri_A1501 1 1
Pseudomonas_fulva_12-X 4 4
Pseudomonas_putida_F1 5 5
Pseudomonas_protegens_Pf-5 10 9
Pseudomonas_fluorescens_SBW25 10 10
Pseudomonas_mendocina_ymp 3 3
Pseudomonas_aeruginosa_UCBPP-PA14 9 8
Pseudomonas_sp._VLB120 6 6
Psychrobacter_arcticus_273-4 1 1
Acinetobacter_oleivorans_DR1 5 5
Acinetobacter_calcoaceticus_PHEA-2 5 5
Acinetobacter_baumannii_ATCC_17978 3 3
Acinetobacter_sp._ADP1 5 5
Methylophaga_sp._JAM1 3 3
Thioalkalimicrobium_cyclicum_ALM1 32 5
Francisella_sp._TX077308 1 1
Francisella_cf._novicida_3523 2 1
Candidatus_Korarchaeum_cryptofilum_OPF8 8 5
Acidilobus_saccharovorans_345-15 3 2
Thermogladius_cellulolyticus_1633 1 1
Ignisphaera_aggregans_DSM_17230 2 1
Metallosphaera_cuprina_Ar-4 3 1
Vulcanisaeta_moutnovskia_768-28 2 1
Caldivirga_maquilingensis_IC-167 2 2
Pyrobaculum_sp._1860 2 2
Pyrobaculum_calidifontis_JCM_11548 2 2
Pyrobaculum_arsenaticum_DSM_13514 1 1
Pyrobaculum_oguniense_TE7 1 1
Pyrobaculum_aerophilum_str._IM2 2 2
Thermoproteus_uzoniensis_768-20 1 1
Thermoproteus_tenax_Kra_1 4 3
halophilic_archaeon_DL31 1 1
Methanocella_arvoryzae_MRE50 10 6
Methanocella_paludicola_SANAE 3 2
Methanosaeta_harundinacea_6Ac 40 18
Methanosaeta_thermophila_PT 16 10
Methanosaeta_concilii_GP6 22 15
Methanosalsum_zhilinae_DSM_4017 9 4
Methanohalobium_evestigatum_Z-7303 10 6
Methanococcoides_burtonii_DSM_6242 10 7
Methanosarcina_acetivorans_C2A 69 48
Methanosarcina_mazei_Go1 45 31
Methanosarcina_barkeri_str._Fusaro 65 47
Methanohalophilus_mahii_DSM_5219 11 5
Methanosphaerula_palustris_E1-9c 44 35
Methanoregula_boonei_6A8 3 3
Methanospirillum_hungatei_JF-1 10 9
Methanocorpusculum_labreanum_Z 1 1
Methanoplanus_petrolearius_DSM_11571 8 5
Methanoculleus_bourgensis_MS2 10 7
Methanoculleus_marisnigri_JR1 3 3
Ferroglobus_placidus_DSM_10642 2 2
Archaeoglobus_veneficus_SNP6 7 1
Archaeoglobus_fulgidus_DSM_4304 6 4
Thermococcus_sp._4557 3 1
Thermococcus_gammatolerans_EJ3 3 1
Thermococcus_sibiricus_MM_739 1 1
Thermococcus_barophilus_MP 5 1
Thermoplasma_volcanium_GSS1 1 1
Thermoplasma_acidophilum_DSM_1728 1 1
Picrophilus_torridus_DSM_9790 1 1
Salinarchaeum_sp._Harcht-Bsk1 11 9
Halopiger_xanaduensis_SH-6 12 12
Haloterrigena_turkmenica_DSM_5511 19 18
Natrinema_sp._J7-2 3 3
Natrialba_magadii_ATCC_43099 8 8
Halorubrum_lacusprofundi_ATCC_49239 2 2
Haloquadratum_walsbyi_DSM_16790 4 3
Halogeometricum_borinquense_DSM_11551 9 7
Haloferax_mediterranei_ATCC_33500 14 11
Haloferax_volcanii_DS2 11 8
Halomicrobium_mukohataei_DSM_12286 5 5
Halorhabdus_utahensis_DSM_12940 7 7
Natronomonas_pharaonis_DSM_2160 3 3
Haloarcula_hispanica_ATCC_33960 8 8
Haloarcula_marismortui_ATCC_43049 6 6
Halalkalicoccus_jeotgali_B3 14 14
Halobacterium_salinarum_R1 3 2
Halobacterium_sp._NRC-1 2 1
Methanotorris_igneus_Kol_5 8 4
Methanocaldococcus_sp._FS406-22 3 1
Methanocaldococcus_vulcanius_M7 5 2
Methanocaldococcus_jannaschii_DSM_2661 2 1
Methanothermococcus_okinawensis_IH1 2 2
Methanococcus_maripaludis_C5 5 3
Methanococcus_voltae_A3 18 12
Methanococcus_vannielii_SB 1 1
Methanothermus_fervidus_DSM_2088 7 6
Methanothermobacter_marburgensis_str._Marburg 9 6
Methanothermobacter_thermautotrophicus_str._Delta_H 7 4
Methanosphaera_stadtmanae_DSM_3091 53 30
Methanobrevibacter_sp._AbM4 31 16
Methanobrevibacter_ruminantium_M1 187 71
Methanobrevibacter_smithii_ATCC_35061 75 28
Complete_genome_sequence_of_Methanobacterium_sp._Mb1 2 2
Aciduliprofundum_sp._MAR08-339 13 5
Aciduliprofundum_boonei_T469 20 9
Acholeplasma_laidlawii_PG-8A 3 2

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   17 13
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   9 6
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   7 3
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   9 5
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   11 4
Cryptococcus_neoformans_var._grubii_H99_ 4 4
Cryptococcus_neoformans_B-3501A_ 4 4
Cryptococcus_neoformans_JEC21_ 3 3
Paracoccidioides_brasiliensis_Pb01_ 8 4
Paracoccidioides_brasiliensis_Pb03_ 8 4
Coccidioides_posadasii_str._Silveira_ 2 1
Coccidioides_immitis_RMSCC_3703_ 3 2
Coccidioides_immitis_RMSCC_2394_ 3 2
Coccidioides_immitis_H538.4_ 4 3
Ajellomyces_dermatitidis_ER-3_ 6 3
Histoplasma_capsulatum_H143 10 5
Histoplasma_capsulatum_H88 13 7
Histoplasma_capsulatum_G186AR 8 4
Aspergillus_fumigatus_A1163_ 43 34
Saccharomyces_cerevisiae_PW5 1 1
Saccharomyces_cerevisiae_FL100 1 1
Saccharomyces_cerevisiae_CLIB382 1 1
Saccharomyces_cerevisiae_CLIB324 1 1
Saccharomyces_cerevisiae_CBS7960 1 1
Saccharomyces_cerevisiae_YJM269 1 1
Saccharomyces_cerevisiae_T7 1 1
Saccharomyces_cerevisiae_FostersB 1 1
Saccharomyces_cerevisiae_FostersO 1 1
Saccharomyces_cerevisiae_VL3 1 1
Saccharomyces_cerevisiae_Vin13 1 1
Saccharomyces_cerevisiae_LalvinQA23 1 1
Saccharomyces_cerevisiae_AWRI796 1 1
Saccharomyces_cerevisiae_Sigma1278b 1 1
Saccharomyces_cerevisiae_W303 1 1
Saccharomyces_cerevisiae_CLIB215 1 1
Saccharomyces_cerevisiae_YJM789_ 1 1
Saccharomyces_cerevisiae_YJM789 1 1
Saccharomyces_cerevisiae_RM11-1a 1 1
Saccharomyces_cerevisiae_RM11-1a_ 1 1
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   1 1
Batrachochytrium_dendrobatidis_JAM81_ 2 2
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   110 110
Hordeum_vulgare_22   (Domesticated barley)   162 162
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   113 113
Trypanosoma_brucei_Lister_427_v4.1 18 6
Chroococcidiopsis_thermalis_PCC_7203 32 14
Chamaesiphon_minutus_PCC_6605 5 3
Synechocystis_sp._PCC_6803_substr._PCC-P 1 1
Synechocystis_sp._PCC_6803_substr._PCC-N 1 1
Synechocystis_sp._PCC_6803_substr._GT-I 1 1
Synechocystis_sp._PCC_6803 1 1
Cyanobium_gracile_PCC_6307 2 2
Dactylococcopsis_salina_PCC_8305 32 14
Synechococcus_sp._JA-2-3B'a(2-13) 3 3
Synechococcus_sp._JA-3-3Ab 4 3
Synechococcus_sp._CC9902 2 1
Prochlorococcus_marinus_subsp._marinus_str._CCMP1375 1 1
Prochlorococcus_marinus_str._MIT_9211 1 1
Crinalium_epipsammum_PCC_9333 8 7
Oscillatoria_nigro-viridis_PCC_7112 26 17
Oscillatoria_acuminata_PCC_6304 79 41
Arthrospira_platensis_NIES-39 17 11
Cyanothece_sp._PCC_7822 42 20
Cyanothece_sp._PCC_7425 3 2
Cyanothece_sp._PCC_7424 21 9
Cyanothece_sp._ATCC_51142 13 5
Cyanothece_sp._PCC_8801 6 3
Cyanobacterium_aponinum_PCC_10605 8 7
Cyanobacterium_stanieri_PCC_7202 4 3
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 3 3
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 28 7
Stanieria_cyanosphaera_PCC_7437 30 12
Calothrix_parietina_Calothrix_sp._PCC_6303 71 26
Cylindrospermum_stagnale_PCC_7417 23 15
Anabaena_cylindrica_PCC_7122 52 22
Gordonibacter_pamelaeae_7-10-1-b 1 1
Frankia_sp._EuI1c 8 7
Frankia_sp._CcI3 1 1
Nocardiopsis_alba_ATCC_BAA-2165 8 4
Streptomyces_albus_J1074 8 6
Streptomyces_rapamycinicus_NRRL_5491 25 24
Streptomyces_davawensis_JCM_4913 22 20
Streptomyces_fulvissimus_DSM_40593 18 14
Streptomyces_venezuelae_ATCC_10712 23 19
Streptomyces_collinus_Tu_365 9 7
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 13 7
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 15 12
Saccharothrix_espanaensis_DSM_44229 3 3
Amycolatopsis_mediterranei_RB 30 29
Amycolatopsis_mediterranei_S699 30 29
Amycolatopsis_mediterranei_S699 30 29
Amycolatopsis_orientalis_HCCB10007 17 16
Propionibacterium_acnes_ATCC_11828 1 1
Propionibacterium_acnes_TypeIA2_P.acn31 1 1
Propionibacterium_acnes_TypeIA2_P.acn17 2 1
Propionibacterium_acnes_TypeIA2_P.acn33 1 1
Propionibacterium_acnes_C1 1 1
Propionibacterium_acnes_HL096PA1 1 1
Propionibacterium_acnes_6609 1 1
Propionibacterium_acnes_266 2 1
Propionibacterium_acnes_KPA171202 1 1
Propionibacterium_acidipropionici_ATCC_4875 5 5
Actinoplanes_friuliensis_DSM_7358 26 23
Nocardia_brasiliensis_ATCC_700358 4 4
Mycobacterium_sp._MOTT36Y 7 1
Mycobacterium_sp._KMS 4 3
Mycobacterium_sp._MCS 4 3
Mycobacterium_yongonense_05-1390 6 1
Mycobacterium_gilvum_Spyr1 2 2
Mycobacterium_kansasii_ATCC_12478 1 1
Corynebacterium_halotolerans_YIM_70093_=_DSM_44683 1 1
Corynebacterium_glutamicum_MB001 1 1
Corynebacterium_glutamicum_SCgG2 2 2
Corynebacterium_glutamicum_SCgG1 2 2
Corynebacterium_glutamicum_ATCC_13032 1 1
Corynebacterium_glutamicum_ATCC_13032 1 1
Corynebacterium_glutamicum_ATCC_13032 1 1
Leifsonia_xyli_subsp._cynodontis_DSM_46306 3 3
Clavibacter_michiganensis_subsp._sepedonicus 5 5
Clavibacter_michiganensis_subsp._nebraskensis_NCPPB_2581 9 6
Gardnerella_vaginalis_HMP9231 1 1
Gardnerella_vaginalis_ATCC_14019 1 1
Bifidobacterium_longum_DJO10A 1 1
Bifidobacterium_longum_subsp._infantis_157F 2 2
Bifidobacterium_longum_subsp._longum_KACC_91563 2 2
Bifidobacterium_longum_subsp._longum_BBMN68 2 2
Bifidobacterium_longum_subsp._longum_F8 1 1
Bifidobacterium_longum_subsp._longum_JCM_1217 2 2
Bifidobacterium_animalis_subsp._lactis_Bl12 1 1
Bifidobacterium_animalis_subsp._lactis_B420 1 1
Bifidobacterium_animalis_subsp._lactis_ATCC_27673 1 1
Bifidobacterium_animalis_subsp._lactis_BLC1 1 1
Bifidobacterium_animalis_subsp._lactis_CNCM_I-2494 1 1
Bifidobacterium_animalis_subsp._lactis_Bi-07 1 1
Bifidobacterium_animalis_subsp._lactis_V9 1 1
Bifidobacterium_animalis_subsp._lactis_DSM_10140 1 1
Bifidobacterium_animalis_subsp._lactis_BB-12 1 1
Bifidobacterium_animalis_subsp._lactis_AD011 1 1
Bifidobacterium_asteroides_PRL2011 4 3
Bifidobacterium_bifidum_PRL2010 2 2
Bifidobacterium_bifidum_BGN4 3 2
Actinomyces_graevenitzii_C83_ 1 1
Actinomyces_viscosus_C505 1 1
Dehalococcoides_mccartyi_DCMB5 1 1
Dehalococcoides_mccartyi_BTF08 1 1
Dehalococcoides_sp._GT 1 1
Dehalococcoides_sp._CBDB1 1 1
Chthonomonas_calidirosea_T49 8 7
Deinococcus_peraridilitoris_DSM_19664 18 17
[Eubacterium]_cylindroides_[Eubacterium]_cylindroides_T2-87 1 1
Erysipelothrix_rhusiopathiae_SY1027 2 2
Clostridium_thermocellum_DSM_1313 10 9
[Clostridium]_stercorarium_Clostridiu_subsp._stercorarium_DSM_8532 6 5
Faecalibacterium_prausnitzii_L2-6 4 4
Ruminococcus_champanellensis_18P13 8 7
Sulfobacillus_acidophilus_TPY 2 1
Desulfosporosinus_meridiei_DSM_13257 1 1
Desulfitobacterium_dichloroeliminans_LMG_P-21439 3 2
Desulfitobacterium_hafniense_DCB-2 4 4
Desulfotomaculum_gibsoniae_DSM_7213 1 1
Clostridium_difficile_BI1 3 3
Clostridium_difficile_R20291 3 3
Clostridium_difficile_CD196 3 3
Clostridium_saccharolyticum_Clostridium_cf._saccharolyticum_K10 1 1
Roseburia_intestinalis_XB6B4 7 6
Clostridium_sp._SY8519 5 3
Clostridium_saccharobutylicum_DSM_13864 7 7
Clostridium_autoethanogenum_DSM_10061 2 2
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 15 14
Clostridium_perfringens_SM101 1 1
Clostridium_perfringens_str._13 1 1
Clostridium_pasteurianum_BC1 4 2
Clostridium_botulinum_H04402_065 1 1
Clostridium_botulinum_BKT015925 1 1
Clostridium_botulinum_F_str._230613 1 1
Clostridium_botulinum_F_str._Langeland 1 1
Clostridium_botulinum_E3_str._Alaska_E43 3 2
Clostridium_botulinum_A3_str._Loch_Maree 1 1
Clostridium_acetobutylicum_DSM_1731 16 14
Clostridium_acetobutylicum_EA_2018 16 14
Thermoanaerobacterium_saccharolyticum_JW/SL-YS485 4 3
Thermoanaerobacterium_thermosaccharolyticum_M0795 2 2
Thermacetogenium_phaeum_DSM_12270 1 1
Carnobacterium_maltaromaticum_LMA28 1 1
Melissococcus_plutonius_ATCC_35311 6 6
Enterococcus_mundtii_QU_25 5 5
Enterococcus_casseliflavus_EC20 2 2
Enterococcus_faecium_Aus0085 4 4
Enterococcus_faecium_NRRL_B-2354 6 6
Enterococcus_faecium_DO 4 4
Enterococcus_faecalis_str._Symbioflor_1 1 1
Enterococcus_faecalis_D32 3 2
Enterococcus_faecalis_OG1RF 3 2
Enterococcus_faecalis_V583 2 2
Leuconostoc_mesenteroides_subsp._mesenteroides_J18 1 1
Lactobacillus_paracasei_subsp._paracasei_8700:2 1 1
Lactobacillus_casei_LOCK919 1 1
Lactobacillus_casei_W56 1 1
Lactobacillus_casei_LC2W 1 1
Lactobacillus_casei_BD-II 1 1
Lactobacillus_casei_BL23 1 1
Lactobacillus_casei_str._Zhang 1 1
Lactobacillus_rhamnosus_LOCK908 3 3
Lactobacillus_rhamnosus_LOCK900 2 2
Lactobacillus_rhamnosus_ATCC_8530 3 3
Lactobacillus_rhamnosus_GG 1 1
Lactobacillus_rhamnosus_GG 1 1
Lactobacillus_johnsonii_N6.2 3 3
Lactobacillus_johnsonii_DPC_6026 3 3
Lactobacillus_johnsonii_NCC_533 3 3
Lactobacillus_amylovorus_GRL_1112 2 2
Lactobacillus_reuteri_TD1 1 1
Lactobacillus_reuteri_JCM_1112 1 1
Lactobacillus_reuteri_SD2112 1 1
Lactobacillus_plantarum_16 2 2
Lactobacillus_plantarum_ZJ316 3 3
Lactobacillus_plantarum_subsp._plantarum_ST-III 2 2
Lactobacillus_plantarum_subsp._plantarum_P-8 2 2
Lactobacillus_plantarum_WCFS1 1 1
Lactobacillus_helveticus_R0052 1 1
Lactobacillus_helveticus_H10 1 1
Lactobacillus_helveticus_CNRZ32 1 1
Lactobacillus_delbrueckii_subsp._bulgaricus_ND02 2 2
Lactobacillus_delbrueckii_subsp._bulgaricus_ATCC_11842 2 2
Lactobacillus_delbrueckii_subsp._bulgaricus_2038 2 2
Lactobacillus_brevis_KB290 3 3
Lactobacillus_acidophilus_La-14 2 2
Lactobacillus_acidophilus_NCFM 2 2
Lactococcus_lactis_subsp._lactis_KLDS_4.0325 4 4
Lactococcus_lactis_subsp._lactis_IO-1 1 1
Lactococcus_lactis_subsp._lactis_CV56 2 2
Lactococcus_lactis_subsp._lactis_Il1403 2 2
Lactococcus_lactis_subsp._cremoris_A76 1 1
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_BAA-2069 3 3
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_43143 3 3
Streptococcus_dysgalactiae_subsp._equisimilis_167 1 1
Streptococcus_dysgalactiae_subsp._equisimilis_AC-2713 1 1
Streptococcus_dysgalactiae_subsp._equisimilis_ATCC_12394 1 1
Streptococcus_dysgalactiae_subsp._equisimilis_RE378 1 1
Streptococcus_iniae_SF1 1 1
Streptococcus_parasanguinis_FW213 1 1
Streptococcus_pyogenes_HSC5 1 1
Streptococcus_pyogenes_A20 1 1
Streptococcus_pyogenes_MGAS1882 1 1
Streptococcus_pyogenes_MGAS15252 1 1
Streptococcus_pyogenes_Alab49 1 1
Streptococcus_pyogenes_MGAS10750 1 1
Streptococcus_pyogenes_MGAS10270 1 1
Streptococcus_pyogenes_MGAS2096 1 1
Streptococcus_pyogenes_MGAS9429 1 1
Streptococcus_pyogenes_MGAS6180 1 1
Streptococcus_pyogenes_NZ131 1 1
Streptococcus_pyogenes_MGAS8232 1 1
Streptococcus_pyogenes_MGAS10394 1 1
Streptococcus_pyogenes_MGAS315 1 1
Streptococcus_pyogenes_SSI-1 1 1
Streptococcus_pyogenes_M1_476 1 1
Streptococcus_pyogenes_MGAS5005 1 1
Streptococcus_pyogenes_M1_GAS 1 1
Streptococcus_pneumoniae_A026 2 1
Streptococcus_pneumoniae_ST556 2 1
Streptococcus_pneumoniae_SPN994039 2 1
Streptococcus_pneumoniae_SPN994038 2 1
Streptococcus_pneumoniae_SPN034183 2 1
Streptococcus_pneumoniae_SPN034156 2 1
Streptococcus_pneumoniae_INV104 2 1
Streptococcus_pneumoniae_INV200 1 1
Streptococcus_pneumoniae_OXC141 2 1
Streptococcus_pneumoniae_gamPNI0373 2 1
Streptococcus_pneumoniae_AP200 2 1
Streptococcus_pneumoniae_ATCC_700669 2 1
Streptococcus_pneumoniae_TCH8431/19A 2 1
Streptococcus_pneumoniae_CGSP14 2 1
Streptococcus_pneumoniae_G54 2 1
Streptococcus_pneumoniae_JJA 2 1
Streptococcus_pneumoniae_70585 1 1
Streptococcus_pneumoniae_Hungary19A-6 2 1
Streptococcus_pneumoniae_Taiwan19F-14 2 1
Streptococcus_pneumoniae_D39 2 1
Streptococcus_pneumoniae_670-6B 2 1
Streptococcus_pneumoniae_R6 2 1
Streptococcus_pneumoniae_TIGR4 1 1
Streptococcus_mutans_GS-5 1 1
Streptococcus_mutans_LJ23 1 1
Streptococcus_mutans_UA159 1 1
Streptococcus_suis_T15 3 3
Streptococcus_suis_SC070731 2 2
Streptococcus_suis_S735 2 2
Streptococcus_suis_ST3 2 2
Streptococcus_suis_D9 1 1
Streptococcus_suis_SS12 2 2
Streptococcus_suis_A7 2 2
Streptococcus_suis_JS14 2 2
Streptococcus_suis_BM407 2 2
Streptococcus_suis_SC84 2 2
Streptococcus_suis_GZ1 2 2
Streptococcus_suis_98HAH33 2 2
Streptococcus_suis_05ZYH33 2 2
Streptococcus_salivarius_CCHSS3 1 1
Streptococcus_salivarius_JIM8777 1 1
Exiguobacterium_antarcticum_B7 3 3
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_Tc-4-1 1 1
Thermobacillus_composti_KWC4 4 3
Paenibacillus_sp._Y412MC10 16 16
Paenibacillus_mucilaginosus_KNP414 40 35
Paenibacillus_mucilaginosus_K02 39 34
Paenibacillus_larvae_subsp._larvae_DSM_25430 2 2
Paenibacillus_polymyxa_CR1 15 13
Paenibacillus_polymyxa_SC2 13 11
Paenibacillus_polymyxa_E681 13 11
Listeria_monocytogenes_N53-1 1 1
Listeria_monocytogenes_La111 1 1
Listeria_monocytogenes_M7 2 2
Listeria_monocytogenes_J1-220 1 1
Listeria_monocytogenes_J1816 1 1
Listeria_monocytogenes_SLCC7179 1 1
Listeria_monocytogenes_L99 2 2
Listeria_monocytogenes_HCC23 2 2
Listeria_monocytogenes_10403S 1 1
Listeria_monocytogenes_J0161 1 1
Listeria_monocytogenes_EGD-e 1 1
Geobacillus_sp._Y4.1MC1 1 1
Amphibacillus_xylanus_NBRC_15112 3 3
Bacillus_amyloliquefaciens_subsp._plantarum_sequencing 10 8
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5033 11 7
Bacillus_amyloliquefaciens_subsp._plantarum_AS43.3 8 6
Bacillus_amyloliquefaciens_subsp._plantarum_YAU_B9601-Y2 11 9
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5113 7 5
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5036 7 5
Bacillus_amyloliquefaciens_subsp._plantarum_CAU_B946 8 7
Bacillus_amyloliquefaciens_LFB112 8 6
Bacillus_amyloliquefaciens_CC178 7 6
Bacillus_amyloliquefaciens_Y2 12 9
Bacillus_amyloliquefaciens_IT-45 7 6
Bacillus_amyloliquefaciens_XH7 13 10
Bacillus_amyloliquefaciens_LL3 12 9
Bacillus_amyloliquefaciens_TA208 13 10
Bacillus_amyloliquefaciens_DSM_7 12 9
Bacillus_licheniformis_9945A 11 10
Bacillus_subtilis_PY79 8 6
Bacillus_subtilis_XF-1 6 5
Bacillus_subtilis_QB928 11 8
Bacillus_subtilis_BSn5 8 6
Bacillus_subtilis_subsp._subtilis_str._BAB-1 6 5
Bacillus_subtilis_subsp._subtilis_str._BSP1 6 5
Bacillus_subtilis_subsp._subtilis_str._RO-NN-1 7 6
Bacillus_subtilis_subsp._subtilis_6051-HGW 11 8
Bacillus_subtilis_subsp._spizizenii_TU-B-10 7 6
Bacillus_subtilis_subsp._spizizenii_str._W23 8 6
Bacillus_subtilis_subsp._natto_BEST195 6 5
Bacillus_licheniformis_DSM_13_=_ATCC_14580 13 11
Bacillus_infantis_NRRL_B-14911 9 8
Bacillus_toyonensis_BCT-7112 2 1
Bacillus_thuringiensis_HD-771 2 2
Bacillus_thuringiensis_HD-789 3 3
Bacillus_thuringiensis_MC28 5 5
Bacillus_thuringiensis_serovar_chinensis_CT-43 2 2
Bacillus_thuringiensis_YBT-1518 4 4
Bacillus_thuringiensis_Bt407 2 2
Bacillus_thuringiensis_serovar_konkukian_str._97-27 2 2
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 3 3
Bacillus_thuringiensis_BMB171 2 2
Bacillus_thuringiensis_serovar_finitimus_YBT-020 1 1
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 2 2
Bacillus_cereus_FRI-35 1 1
Bacillus_cereus_biovar_anthracis_str._CI 2 2
Bacillus_cereus_AH820 4 3
Bacillus_cereus_B4264 2 2
Bacillus_cereus_G9842 2 2
Bacillus_cereus_Q1 1 1
Bacillus_cereus_ATCC_14579 2 2
Bacillus_anthracis_str._H9401 2 2
Bacillus_anthracis_str._CDC_684 2 2
Bacillus_anthracis_str._'Ames_Ancestor' 2 2
Bacillus_anthracis_str._Sterne 2 2
Bacillus_anthracis_str._Ames 2 2
Bacillus_megaterium_WSH-002 3 3
Bacillus_megaterium_QM_B1551 2 2
Bacillus_coagulans_36D1 1 1
Staphylococcus_aureus_subsp._aureus_MSHR1132 1 1
Staphylococcus_pseudintermedius_ED99 1 1
Staphylococcus_pasteuri_SP1 2 2
Staphylococcus_lugdunensis_N920143 2 2
Staphylococcus_warneri_SG1 2 2
Staphylococcus_epidermidis_ATCC_12228 1 1
Staphylococcus_aureus_CA-347 1 1
Staphylococcus_aureus_Bmb9393 1 1
Staphylococcus_aureus_M1 1 1
Staphylococcus_aureus_08BA02176 1 1
Staphylococcus_aureus_ST228/18412 1 1
Staphylococcus_aureus_ST228/18341 1 1
Staphylococcus_aureus_ST228/16125 1 1
Staphylococcus_aureus_ST228/16035 1 1
Staphylococcus_aureus_ST228/15532 1 1
Staphylococcus_aureus_ST228/10497 1 1
Staphylococcus_aureus_ST228/10388 1 1
Staphylococcus_aureus_04-02981 1 1
Staphylococcus_aureus_RF122 1 1
Staphylococcus_aureus_subsp._aureus_Z172 1 1
Staphylococcus_aureus_subsp._aureus_6850 1 1
Staphylococcus_aureus_subsp._aureus_SA957 1 1
Staphylococcus_aureus_subsp._aureus_CN1 1 1
Staphylococcus_aureus_subsp._aureus_SA40 1 1
Staphylococcus_aureus_subsp._aureus_11819-97 1 1
Staphylococcus_aureus_subsp._aureus_M013 1 1
Staphylococcus_aureus_subsp._aureus_HO_5096_0412 1 1
Staphylococcus_aureus_subsp._aureus_VC40 1 1
Staphylococcus_aureus_subsp._aureus_T0131 1 1
Staphylococcus_aureus_subsp._aureus_LGA251 1 1
Staphylococcus_aureus_subsp._aureus_ECT-R_2 1 1
Staphylococcus_aureus_subsp._aureus_JKD6159 1 1
Staphylococcus_aureus_subsp._aureus_ED133 1 1
Staphylococcus_aureus_subsp._aureus_ED98 1 1
Staphylococcus_aureus_subsp._aureus_TW20 1 1
Staphylococcus_aureus_subsp._aureus_55/2053 1 1
Staphylococcus_aureus_subsp._aureus_TCH60 1 1
Staphylococcus_aureus_subsp._aureus_str._JKD6008 1 1
Staphylococcus_aureus_subsp._aureus_71193 1 1
Staphylococcus_aureus_subsp._aureus_S0385 1 1
Staphylococcus_aureus_subsp._aureus_str._Newman 1 1
Staphylococcus_aureus_subsp._aureus_Mu3 1 1
Staphylococcus_aureus_subsp._aureus_USA300_TCH1516 1 1
Staphylococcus_aureus_subsp._aureus_USA300_FPR3757 1 1
Staphylococcus_aureus_subsp._aureus_JH9 1 1
Staphylococcus_aureus_subsp._aureus_MSSA476 1 1
Staphylococcus_aureus_subsp._aureus_MRSA252 1 1
Staphylococcus_aureus_subsp._aureus_MW2 1 1
Staphylococcus_aureus_subsp._aureus_N315 1 1
Staphylococcus_aureus_subsp._aureus_Mu50 1 1
Staphylococcus_aureus_subsp._aureus_COL 1 1
Staphylococcus_aureus_subsp._aureus_NCTC_8325 1 1
Salinibacter_ruber_DSM_13855 2 2
Rhodothermus_marinus_SG0.5JP17-172 8 8
Echinicola_vietnamensis_DSM_17526 29 29
Emticicia_oligotrophica_DSM_17448 7 7
Prevotella_sp._oral_taxon_299_str._F0039 2 2
Prevotella_dentalis_DSM_3688 15 14
Porphyromonas_gingivalis_TDC60 2 2
Porphyromonas_gingivalis_W83 2 2
Alistipes_shahii_WAL_8301 8 8
Bacteroides_xylanisolvens_XB1A 30 30
Bacteroides_fragilis_638R 6 6
Bacteroides_fragilis_NCTC_9343 6 6
Nonlabens_dokdonensis_DSW-6 15 6
Psychroflexus_torquis_ATCC_700755 5 4
Riemerella_anatipestifer_RA-CH-2 3 3
Riemerella_anatipestifer_RA-CH-1 4 4
Riemerella_anatipestifer_RA-GD 2 2
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 4 4
Fibrobacter_succinogenes_subsp._succinogenes_S85 14 14
Chlamydia_pecorum_P787 4 4
Chlamydia_pecorum_W73 4 4
Chlamydia_pecorum_PV3056/3 5 5
Chlamydophila_pneumoniae_LPCoLN 5 3
Chlamydophila_pneumoniae_J138 6 4
Chlamydophila_pneumoniae_CWL029 4 3
Chlamydophila_pneumoniae_AR39 5 4
Chlamydia_psittaci_01DC12 2 2
Chlamydia_psittaci_WS/RT/E30 2 2
Chlamydia_psittaci_VS225 3 3
Chlamydia_psittaci_MN 3 3
Chlamydia_psittaci_GR9 1 1
Chlamydia_psittaci_84/55 1 1
Chlamydia_psittaci_08DC60 2 2
Chlamydia_psittaci_02DC15 2 2
Chlamydia_psittaci_C19/98 2 2
Chlamydia_psittaci_CP3 4 4
Chlamydophila_psittaci_RD1 2 2
Chlamydia_psittaci_Mat116 1 1
Chlamydophila_psittaci_6BC 2 2
Chlamydophila_psittaci_6BC 2 2
Chlamydia_trachomatis_C/TW-3 1 1
Chlamydia_trachomatis_L2/434/Bu(f) 2 2
Chlamydia_trachomatis_L2/434/Bu(i) 2 2
Chlamydia_trachomatis_IU888 1 1
Chlamydia_trachomatis_IU824 1 1
Chlamydia_trachomatis_L2b/Canada2 2 2
Chlamydia_trachomatis_L2b/Canada1 2 2
Chlamydia_trachomatis_L3/404/LN 2 2
Chlamydia_trachomatis_L2b/Ams5 2 2
Chlamydia_trachomatis_L2b/Ams4 2 2
Chlamydia_trachomatis_L2b/Ams3 2 2
Chlamydia_trachomatis_L2b/Ams2 2 2
Chlamydia_trachomatis_L2b/Ams1 2 2
Chlamydia_trachomatis_L2b/795 2 2
Chlamydia_trachomatis_L2b/CV204 2 2
Chlamydia_trachomatis_L2b/LST 2 2
Chlamydia_trachomatis_L2b/UCH-2 2 2
Chlamydia_trachomatis_L2b/8200/07 2 2
Chlamydia_trachomatis_L2/25667R 2 2
Chlamydia_trachomatis_L1/224 2 2
Chlamydia_trachomatis_L1/115 2 2
Chlamydia_trachomatis_L1/440/LN 2 2
Chlamydia_trachomatis_K/SotonK1 1 1
Chlamydia_trachomatis_Ia/SotonIa3 1 1
Chlamydia_trachomatis_Ia/SotonIa1 1 1
Chlamydia_trachomatis_G/SotonG1 1 1
Chlamydia_trachomatis_F/SotonF3 1 1
Chlamydia_trachomatis_F/SW5 1 1
Chlamydia_trachomatis_F/SW4 1 1
Chlamydia_trachomatis_E/SotonE8 1 1
Chlamydia_trachomatis_E/SotonE4 1 1
Chlamydia_trachomatis_E/SW3 1 1
Chlamydia_trachomatis_D/SotonD6 1 1
Chlamydia_trachomatis_D/SotonD5 1 1
Chlamydia_trachomatis_D/SotonD1 1 1
Chlamydia_trachomatis_A/5291 1 1
Chlamydia_trachomatis_A/363 1 1
Chlamydia_trachomatis_RC-J/971 2 2
Chlamydia_trachomatis_RC-L2/55 2 2
Chlamydia_trachomatis_J/6276tet1 1 1
Chlamydia_trachomatis_RC-J/966 2 2
Chlamydia_trachomatis_RC-J(s)/122 2 2
Chlamydia_trachomatis_RC-F(s)/342 1 1
Chlamydia_trachomatis_RC-L2(s)/3 2 2
Chlamydia_trachomatis_RC-J/953 2 2
Chlamydia_trachomatis_RC-J943 2 2
Chlamydia_trachomatis_RC-Fs852 1 1
Chlamydia_trachomatis_RC-L2s46 2 2
Chlamydia_trachomatis_RC-F69 2 2
Chlamydia_trachomatis_L2c 2 2
Chlamydia_trachomatis_D-LC 1 1
Chlamydia_trachomatis_D-EC 1 1
Chlamydia_trachomatis_G/9301 1 1
Chlamydia_trachomatis_G/11074 1 1
Chlamydia_trachomatis_G/11222 1 1
Chlamydia_trachomatis_G/9768 1 1
Chlamydia_trachomatis_E/150 1 1
Chlamydia_trachomatis_E/11023 1 1
Chlamydia_trachomatis_B/TZ1A828/OT 1 1
Chlamydia_trachomatis_Sweden2 1 1
Chlamydia_trachomatis_E/Bour 1 1
Chlamydia_trachomatis_A2497 1 1
Chlamydia_trachomatis_A2497 1 1
Chlamydia_trachomatis_L2b/UCH-1/proctitis 2 2
Chlamydia_trachomatis_434/Bu 2 2
Chlamydia_trachomatis_A/HAR-13 1 1
Chlamydia_trachomatis_D/UW-3/CX 1 1
Singulisphaera_acidiphila_DSM_18658 22 19
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 3 3
Leptospira_interrogans_serovar_Lai_str._56601 7 7
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 6 6
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 4 4
Borrelia_afzelii_PKo 1 1
Borrelia_burgdorferi_JD1 2 2
Borrelia_burgdorferi_ZS7 1 1
Treponema_pedis_str._T_A4 5 4
Spirochaeta_thermophila_DSM_6578 4 4
Thermotoga_maritima_MSB8 2 2
Hydrogenobacter_thermophilus_TK-6 2 2
Fusobacterium_nucleatum_subsp._vincentii_3_1_36A2 4 4
Fusobacterium_nucleatum_subsp._animalis_4_8 6 6
Bdellovibrio_bacteriovorus_str._Tiberius 3 3
Arcobacter_butzleri_ED-1 4 4
Campylobacter_jejuni_Waterborne_C.jejuni_Outbreak 3 3
Campylobacter_jejuni_RM1221 2 2
Campylobacter_jejuni_subsp._jejuni_00-2544 2 2
Campylobacter_jejuni_subsp._jejuni_00-2538 2 2
Campylobacter_jejuni_subsp._jejuni_00-2426 2 2
Campylobacter_jejuni_subsp._jejuni_00-2425 2 2
Campylobacter_jejuni_subsp._jejuni_PT14 2 2
Campylobacter_jejuni_subsp._jejuni_ICDCCJ07001 3 3
Campylobacter_jejuni_subsp._jejuni_S3 2 2
Campylobacter_jejuni_subsp._jejuni_M1 3 3
Campylobacter_jejuni_subsp._jejuni_IA3902 2 2
Campylobacter_jejuni_subsp._jejuni_81116 3 3
Campylobacter_jejuni_subsp._jejuni_81-176 5 5
Campylobacter_jejuni_subsp._jejuni_NCTC_11168-BN148 2 2
Campylobacter_jejuni_subsp._jejuni_NCTC_11168_=_ATCC_700819 1 1
Campylobacter_coli_76339 5 5
Campylobacter_coli_CVM_N29710 2 2
Desulfocapsa_sulfexigens_DSM_10523 3 3
Desulfobacula_toluolica_Tol2 4 3
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 2 2
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 3 3
Desulfovibrio_desulfuricans_ND132 2 2
Geobacter_sp._M18 6 5
Geobacter_sulfurreducens_PCA 7 5
Sorangium_cellulosum_So0157-2 33 30
Anaeromyxobacter_sp._K 8 7
Anaeromyxobacter_dehalogenans_2CP-C 11 11
Myxococcus_stipitatus_DSM_14675 25 21
Neisseria_meningitidis_WUE_2594 5 5
Neisseria_meningitidis_G2136 4 4
Neisseria_meningitidis_M04-240196 7 7
Neisseria_meningitidis_M01-240149 8 8
Neisseria_meningitidis_NZ-05/33 7 7
Neisseria_meningitidis_M01-240355 10 10
Neisseria_meningitidis_8013 6 6
Neisseria_meningitidis_053442 3 3
Neisseria_meningitidis_Z2491 6 6
Neisseria_meningitidis_H44/76 9 9
Neisseria_meningitidis_alpha710 8 8
Neisseria_meningitidis_MC58 10 10
Neisseria_gonorrhoeae_TCDC-NG08107 7 7
Neisseria_gonorrhoeae_FA_1090 5 5
Burkholderia_phenoliruptrix_BR3459a 8 8
Pandoraea_pnomenusa_3kgm 7 7
Ralstonia_pickettii_12J 5 4
Ralstonia_solanacearum_FQY_4 16 15
Ralstonia_solanacearum_Po82 14 14
Ralstonia_solanacearum_PSI07 14 12
Ralstonia_solanacearum_CMR15 12 12
Ralstonia_solanacearum_GMI1000 18 18
Polynucleobacter_necessarius_subsp._necessarius_STIR1 1 1
Burkholderia_sp._YI23 9 8
Burkholderia_sp._CCGE1003 12 11
Burkholderia_sp._CCGE1001 7 7
Burkholderia_sp._KJ006 13 9
Burkholderia_thailandensis_MSMB121 5 5
Burkholderia_pseudomallei_MSHR305 6 6
Burkholderia_pseudomallei_NCTC_13179 7 7
Burkholderia_pseudomallei_BPC006 6 6
Burkholderia_pseudomallei_1026b 6 6
Burkholderia_pseudomallei_MSHR346 3 3
Burkholderia_pseudomallei_668 6 6
Burkholderia_pseudomallei_1710b 6 6
Burkholderia_pseudomallei_K96243 5 5
Burkholderia_mallei_NCTC_10229 3 3
Burkholderia_mallei_NCTC_10247 3 3
Burkholderia_mallei_ATCC_23344 4 4
Burkholderia_lata 15 10
Burkholderia_ambifaria_MC40-6 24 15
Burkholderia_cenocepacia_MC0-3 18 6
Burkholderia_cenocepacia_AU_1054 12 5
Burkholderia_cenocepacia_J2315 20 9
Burkholderia_multivorans_ATCC_17616 18 8
Burkholderia_cepacia_GG4 8 4
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 3 2
Alicycliphilus_denitrificans_BC 1 1
Variovorax_paradoxus_B4 6 5
Variovorax_paradoxus_EPS 15 6
Taylorella_asinigenitalis_14/45 3 2
Taylorella_equigenitalis_14/56 3 2
Taylorella_equigenitalis_ATCC_35865 3 2
Bordetella_pertussis_CS 18 12
Bordetella_parapertussis_18323 15 9
Bordetella_parapertussis_Bpp5 20 9
Bordetella_bronchiseptica_MO149 24 15
Bordetella_bronchiseptica_253 22 11
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 17 15
Sulfuricella_denitrificans_skB26 7 6
Caulobacter_crescentus_CB15 4 4
Zymomonas_mobilis_subsp._mobilis_CP4 6 3
Phaeobacter_gallaeciensis_DSM_17395 1 1
Phaeobacter_gallaeciensis_DSM_26640 1 1
Leisingera_methylohalidivorans_DSM_14336 2 2
Octadecabacter_antarcticus_307 1 1
Rhodobacter_sphaeroides_KD131 3 3
Rhodobacter_sphaeroides_ATCC_17025 3 3
Rhodobacter_sphaeroides_2.4.1 1 1
Paracoccus_aminophilus_JCM_7686 3 3
Magnetospirillum_gryphiswaldense_MSR-1_v2 6 5
Rhodospirillum_rubrum_ATCC_11170 3 2
Gluconacetobacter_diazotrophicus_PAl_5 5 5
Gluconobacter_oxydans_H24 3 3
Acetobacter_pasteurianus_386B 2 2
Acetobacter_pasteurianus_IFO_3283-12 1 1
Acetobacter_pasteurianus_IFO_3283-01-42C 1 1
Acetobacter_pasteurianus_IFO_3283-32 1 1
Acetobacter_pasteurianus_IFO_3283-26 1 1
Acetobacter_pasteurianus_IFO_3283-22 1 1
Acetobacter_pasteurianus_IFO_3283-07 1 1
Acetobacter_pasteurianus_IFO_3283-03 1 1
Micavibrio_aeruginosavorus_EPB 11 4
Anaplasma_phagocytophilum_str._Dog2 1 1
Anaplasma_phagocytophilum_str._HZ2 1 1
Anaplasma_phagocytophilum_str._JM 1 1
Methylobacterium_extorquens_DM4 6 5
Methylobacterium_extorquens_PA1 9 9
Brucella_ceti_TE10759-12 10 3
Brucella_ceti_TE28753-12 7 3
Brucella_canis_HSK_A52141 18 6
Brucella_suis_VBI22 15 5
Brucella_suis_1330 16 5
Brucella_suis_1330 16 5
Brucella_melitensis_NI 16 9
Brucella_melitensis_M5-90 16 9
Brucella_melitensis_M28 16 9
Brucella_melitensis_bv._1_str._16M 17 7
Brucella_abortus_A13334 19 6
Brucella_melitensis_biovar_Abortus_2308 9 2
Brucella_abortus_bv._1_str._9-941 14 4
Sinorhizobium_fredii_USDA_257 6 6
Sinorhizobium_fredii_HH103 6 5
Sinorhizobium_meliloti_2011 3 3
Sinorhizobium_meliloti_GR4 4 4
Sinorhizobium_meliloti_Rm41 9 8
Sinorhizobium_meliloti_SM11 9 8
Sinorhizobium_meliloti_BL225C 5 5
Sinorhizobium_meliloti_1021 4 4
Rhizobium_etli_CFN_42 11 11
Rhizobium_etli_bv._mimosae_str._Mim1 10 10
Rhizobium_tropici_CIAT_899 5 4
Rhizobium_leguminosarum_bv._trifolii_WSM2304 13 13
Rhizobium_leguminosarum_bv._trifolii_WSM1325 12 11
Mesorhizobium_australicum_WSM2073 5 4
Hyphomicrobium_nitrativorans_NL23 12 12
Hyphomicrobium_denitrificans_1NES1 5 4
Oligotropha_carboxidovorans_OM5 5 4
Oligotropha_carboxidovorans_OM5 5 4
Rhodopseudomonas_palustris_DX-1 6 4
Rhodopseudomonas_palustris_TIE-1 9 5
Rhodopseudomonas_palustris_HaA2 10 8
Rhodopseudomonas_palustris_BisB5 2 2
Rhodopseudomonas_palustris_BisB18 5 5
Rhodopseudomonas_palustris_CGA009 11 7
Bradyrhizobium_sp._S23321 11 8
Bradyrhizobium_sp._BTAi1 7 6
Bradyrhizobium_oligotrophicum_S58 13 10
Bradyrhizobium_japonicum_USDA_6 11 10
Bartonella_australis_Aust/NH1 14 12
Bartonella_vinsonii_subsp._berkhoffii_str._Winnie 11 10
Bartonella_quintana_RM-11 8 6
Simiduia_agarivorans_SA1_=_DSM_21679 14 12
Mannheimia_succiniciproducens_MBEL55E 2 2
Bibersteinia_trehalosi_USDA-ARS-USMARC-192 6 6
Haemophilus_somnus_2336 4 4
Mannheimia_haemolytica_USMARC_2286 10 9
Mannheimia_haemolytica_M42548 11 10
Mannheimia_haemolytica_D174 8 8
Mannheimia_haemolytica_D171 7 7
Mannheimia_haemolytica_D153 10 9
Mannheimia_haemolytica_USDA-ARS-USMARC-183 9 8
Mannheimia_haemolytica_USDA-ARS-USMARC-185 7 6
Pasteurella_multocida_36950 2 2
Pasteurella_multocida_subsp._multocida_str._HN06 2 2
Pasteurella_multocida_subsp._multocida_str._Pm70 3 3
Haemophilus_parasuis_ZJ0906 2 2
Haemophilus_influenzae_KR494 3 3
Haemophilus_influenzae_F3047 5 5
Haemophilus_influenzae_F3031 4 4
Haemophilus_influenzae_10810 3 3
Haemophilus_influenzae_86-028NP 6 6
Haemophilus_influenzae_R2866 3 3
Haemophilus_influenzae_R2846 5 5
Haemophilus_influenzae_Rd_KW20 2 2
Actinobacillus_suis_H91-0380 5 4
Actinobacillus_pleuropneumoniae_serovar_3_str._JL03 1 1
Actinobacillus_pleuropneumoniae_serovar_7_str._AP76 1 1
Vibrio_sp._EJY3 1 1
Vibrio_parahaemolyticus_BB22OP 1 1
Vibrio_nigripulchritudo_VibrioScope 3 3
Vibrio_vulnificus_YJ016 1 1
Vibrio_cholerae_LMA3984-4 1 1
Vibrio_cholerae_M66-2 1 1
Vibrio_cholerae_O395 1 1
Vibrio_cholerae_IEC224 1 1
Vibrio_cholerae_O1_str._2010EL-1786 1 1
Vibrio_cholerae_MJ-1236 1 1
Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 1 1
Shewanella_sp._W3-18-1 1 1
Shewanella_sp._ANA-3 2 2
Shewanella_baltica_OS678 1 1
Shewanella_baltica_OS195 1 1
Shewanella_sp._MR-7 2 2
Shewanella_putrefaciens_200 2 2
Glaciecola_psychrophila_170 3 3
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 2 2
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 4 3
Alteromonas_macleodii_str._'Ionian_Sea_U8' 5 4
Alteromonas_macleodii_str._'Ionian_Sea_U7' 6 5
Alteromonas_macleodii_str._'Ionian_Sea_U4' 8 7
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 4 3
Alteromonas_macleodii_str._'English_Channel_615' 5 5
Alteromonas_macleodii_AltDE1 4 3
Alteromonas_macleodii_str._'English_Channel_673' 11 10
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 9 8
Alteromonas_macleodii_str._'Black_Sea_11' 13 11
Alteromonas_macleodii_ATCC_27126 13 11
Alcanivorax_dieselolei_B5 13 9
Thalassolituus_oleivorans_MIL-1 1 1
Stenotrophomonas_maltophilia_D457 16 7
Stenotrophomonas_maltophilia_JV3 20 8
Stenotrophomonas_maltophilia_R551-3 16 8
Xylella_fastidiosa_subsp._fastidiosa_GB514 3 3
Xylella_fastidiosa_M12 2 2
Xylella_fastidiosa_Temecula1 4 4
Xylella_fastidiosa_9a5c 4 4
Xanthomonas_citri_subsp._citri_Aw12879 21 11
Xanthomonas_campestris_pv._vesicatoria_str._85-10 21 11
Xanthomonas_axonopodis_pv._citrumelo_F1 16 6
Xanthomonas_axonopodis_Xac29-1 19 10
Xanthomonas_oryzae_pv._oryzicola_BLS256 14 8
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 14 8
Xanthomonas_oryzae_pv._oryzae_KACC_10331 14 7
Xanthomonas_campestris_pv._raphani_756C 23 13
Xanthomonas_campestris_pv._campestris_str._8004 21 12
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 21 12
Thioalkalivibrio_nitratireducens_DSM_14787 1 1
Legionella_pneumophila_str._Paris 7 1
Legionella_pneumophila_str._Lens 1 1
Legionella_pneumophila_subsp._pneumophila_LPE509 1 1
Legionella_pneumophila_subsp._pneumophila_str._Thunder_Bay 1 1
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 1 1
Legionella_pneumophila_subsp._pneumophila 1 1
Legionella_pneumophila_subsp._pneumophila 1 1
Legionella_pneumophila_subsp._pneumophila_ATCC_43290 1 1
Legionella_pneumophila_2300/99_Alcoy 1 1
Proteus_mirabilis_BB2000 8 8
Morganella_morganii_subsp._morganii_KT 12 11
Edwardsiella_tarda_C07-087 6 5
Edwardsiella_tarda_FL6-60 4 4
Rahnella_aquatilis_HX2 15 14
Yersinia_pseudotuberculosis_PB1/+ 17 16
Yersinia_pseudotuberculosis_YPIII 16 15
Yersinia_pseudotuberculosis_IP_32953 19 18
Yersinia_pestis_biovar_Microtus_str._91001 15 15
Yersinia_pestis_A1122 18 17
Yersinia_pestis_Z176003 19 18
Yersinia_pestis_D182038 18 17
Yersinia_pestis_D106004 18 17
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 16 16
Yersinia_pestis_Nepal516 19 18
Yersinia_pestis_Antiqua 18 17
Yersinia_pestis_Angola 9 9
Yersinia_pestis_CO92 16 15
Yersinia_pestis_KIM10+ 19 18
Yersinia_enterocolitica_subsp._palearctica_105.5R(r) 9 9
Yersinia_enterocolitica_subsp._palearctica_Y11 10 10
Serratia_sp._AS13 10 9
Serratia_plymuthica_S13 9 9
Serratia_plymuthica_4Rx13 9 8
Serratia_marcescens_FGI94 6 4
Serratia_marcescens_WW4 7 6
Serratia_liquefaciens_ATCC_27592 8 8
Dickeya_dadantii_Ech586 18 18
Dickeya_dadantii_3937 23 23
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 19 19
Pantoea_ananatis_LMG_5342 8 8
Pantoea_ananatis_PA13 8 8
Pantoea_ananatis_AJ13355 10 10
Erwinia_pyrifoliae_DSM_12163 7 7
Erwinia_amylovora_CFBP1430 7 7
Cronobacter_sakazakii_CMCC_45402 10 10
Cronobacter_sakazakii_SP291 7 6
Cronobacter_sakazakii_ATCC_BAA-894 6 6
Raoultella_ornithinolytica_B6 4 4
Shigella_sonnei_53G 12 11
Shigella_flexneri_2002017 15 14
Shigella_flexneri_2a_str._2457T 11 10
Shigella_flexneri_2a_str._301 13 12
Shigella_dysenteriae_1617 10 10
Shigella_boydii_Sb227 8 8
Salmonella_bongori_N268-08 12 9
Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 5 5
Salmonella_enterica_subsp._enterica_serovar_4,[5],12:i:-_str._08-1736 7 5
Salmonella_enterica_subsp._enterica_serovar_Javiana_str._CFSAN001992 9 5
Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 4 4
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 15 7
Salmonella_enterica_subsp._enterica_serovar_Enteritidis_str._P125109 8 5
Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 5 5
Salmonella_enterica_subsp._enterica_serovar_Newport_str._USMARC-S3124.1 7 5
Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL254 7 5
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853 4 4
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_var._5-_str._CFSAN001921 10 7
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 9 6
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 8 5
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._UK-1 7 5
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 7 5
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 9 6
Salmonella_enterica_The_genome_of__subsp._enterica_serovar_Typhimurium_str._DT2 7 5
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 8 6
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 7 5
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 7 5
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 7 5
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 9 6
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._P-stx-12 3 3
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty21a 3 3
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18 3 3
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2 3 3
Salmonella_enterica_serovar_Bovismorbificans_genomics 4 4
Salmonella_enterica_subsp._enterica_serovar_Bareilly_str._CFSAN000189 7 5
Salmonella_enterica_subsp._enterica_serovar_Agona_str._24249 13 6
Salmonella_enterica_subsp._enterica_serovar_Agona_str._SL483 12 6
Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._2007-60-3289-1 5 5
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_B_str._SPB7 8 5
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._AKU_12601 5 5
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._ATCC_9150 5 5
Salmonella_enterica_subsp._enterica_Serovar_Heidelberg_str._CFSAN002069 10 6
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._B182 10 6
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578 10 6
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._SL476 5 5
Salmonella_enterica_subsp._enterica_serovar_Pullorum_str._S06004 5 5
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._CDC1983-67 9 5
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._RKS5078 8 4
Salmonella_enterica_subsp._enterica_serovar_Thompson_str._RM6836 7 5
Salmonella_enterica_subsp._enterica_serovar_Gallinarum_str._287/91 4 4
Klebsiella_oxytoca_KCTC_1686 8 8
Klebsiella_pneumoniae_JM45 3 3
Klebsiella_pneumoniae_CG43 2 2
Klebsiella_pneumoniae_KCTC_2242 2 2
Klebsiella_pneumoniae_342 6 6
Klebsiella_pneumoniae_subsp._pneumoniae_1084 2 2
Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 3 3
Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 4 4
Klebsiella_pneumoniae_subsp._rhinoscleromatis_SB3432 4 3
Enterobacter_aerogenes_EA1509E 13 12
Escherichia_coli_E24377A 13 11
Escherichia_coli_E._coli_PMV-1 11 10
Escherichia_coli_JJ1886 14 12
Escherichia_coli_LY180 9 7
Escherichia_coli_APEC_O78 9 8
Escherichia_coli_O7:K1_str._CE10 8 8
Escherichia_coli_O104:H4_str._2009EL-2050 21 17
Escherichia_coli_O104:H4_str._2009EL-2071 21 17
Escherichia_coli_O104:H4_str._2011C-3493 21 17
Escherichia_coli_NA114 14 12
Escherichia_coli_P12b 10 9
Escherichia_coli_str._'clone_D_i2' 16 14
Escherichia_coli_str._'clone_D_i14' 16 14
Escherichia_coli_UM146 11 9
Escherichia_coli_042 19 15
Escherichia_coli_Xuzhou21 17 15
Escherichia_coli_IHE3034 10 8
Escherichia_coli_UMNK88 12 11
Escherichia_coli_O83:H1_str._NRG_857C 10 8
Escherichia_coli_ABU_83972 18 14
Escherichia_coli_KO11FL 10 8
Escherichia_coli_KO11FL 10 8
Escherichia_coli_LF82 10 8
Escherichia_coli_ED1a 11 10
Escherichia_coli_IAI39 7 7
Escherichia_coli_UMN026 16 14
Escherichia_coli_55989 17 13
Escherichia_coli_S88 10 8
Escherichia_coli_IAI1 10 8
Escherichia_coli_W 12 10
Escherichia_coli_W 12 10
Escherichia_coli_DH1 15 13
Escherichia_coli_DH1 15 13
Escherichia_coli_ATCC_8739 10 9
Escherichia_coli_BL21(DE3) 11 10
Escherichia_coli_BL21(DE3) 11 10
Escherichia_coli_SMS-3-5 12 11
Escherichia_coli_SE15 12 10
Escherichia_coli_SE11 11 10
Escherichia_coli_APEC_O1 13 10
Escherichia_coli_O103:H2_str._12009 13 11
Escherichia_coli_UTI89 9 8
Escherichia_coli_536 11 10
Escherichia_coli_HS 15 13
Escherichia_coli_ETEC_H10407 16 14
Escherichia_coli_O55:H7_str._RM12579 14 12
Escherichia_coli_O55:H7_str._CB9615 16 14
Escherichia_coli_O26:H11_str._11368 18 14
Escherichia_coli_CFT073 17 14
Escherichia_coli_O111:H-_str._11128 10 7
Escherichia_coli_O127:H6_str._E2348/69 9 6
Escherichia_coli_O157:H7_str._TW14359 15 13
Escherichia_coli_O157:H7_str._EC4115 14 12
Escherichia_coli_O157:H7_str._Sakai 17 15
Escherichia_coli_O157:H7_str._EDL933 18 16
Escherichia_coli_str._K-12_substr._MDS42 6 5
Escherichia_coli_BW2952 10 9
Escherichia_coli_str._K-12_substr._MG1655 8 7
Escherichia_coli_str._K-12_substr._W3110 12 11
Escherichia_coli_str._K-12_substr._DH10B 10 9
Escherichia_coli_B_str._REL606 10 9
Enterobacter_cloacae_SCF1 10 9
Enterobacter_cloacae_EcWSU1 4 4
Enterobacter_cloacae_subsp._cloacae_ENHKU01 6 6
Enterobacter_cloacae_subsp._cloacae_NCTC_9394 5 5
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 9 9
Azotobacter_vinelandii_CA6 13 11
Azotobacter_vinelandii_CA 13 11
Pseudomonas_denitrificans_ATCC_13867 6 6
Pseudomonas_syringae_pv._phaseolicola_1448A 16 15
Pseudomonas_syringae_pv._syringae_B728a 10 10
Pseudomonas_stutzeri_CCUG_29243 1 1
Pseudomonas_stutzeri_DSM_10701 1 1
Pseudomonas_stutzeri_DSM_4166 1 1
Pseudomonas_stutzeri_RCH2 1 1
Pseudomonas_stutzeri_ATCC_17588_=_LMG_11199 1 1
Pseudomonas_monteilii_SB3101 3 3
Pseudomonas_monteilii_SB3078 3 3
Pseudomonas_putida_H8234 7 7
Pseudomonas_putida_HB3267 4 4
Pseudomonas_putida_NBRC_14164 4 4
Pseudomonas_putida_DOT-T1E 4 4
Pseudomonas_putida_S16 4 4
Pseudomonas_putida_BIRD-1 3 3
Pseudomonas_putida_W619 5 5
Pseudomonas_putida_ND6 7 7
Pseudomonas_putida_KT2440 5 5
Pseudomonas_putida_GB-1 8 8
Pseudomonas_protegens_CHA0 14 14
Pseudomonas_poae_RE*1-1-14 8 8
Pseudomonas_fluorescens_F113 10 10
Pseudomonas_fluorescens_A506 14 7
Pseudomonas_fluorescens_R124 16 10
Pseudomonas_fluorescens_Pf0-1 10 6
Pseudomonas_resinovorans_NBRC_106553 7 6
Pseudomonas_mendocina_NK-01 8 5
Pseudomonas_aeruginosa_SCV20265 10 10
Pseudomonas_aeruginosa_MTB-1 9 9
Pseudomonas_aeruginosa_LES431 7 7
Pseudomonas_aeruginosa_RP73 7 7
Pseudomonas_aeruginosa_B136-33 9 8
Pseudomonas_aeruginosa_PA1R 7 7
Pseudomonas_aeruginosa_PA1 7 7
Pseudomonas_aeruginosa_DK2 7 7
Pseudomonas_aeruginosa_NCGM2.S1 9 8
Pseudomonas_aeruginosa_M18 8 8
Pseudomonas_aeruginosa_LESB58 9 9
Pseudomonas_aeruginosa_PA7 10 10
Pseudomonas_aeruginosa_PAO1 8 8
Acinetobacter_genomosp._13TU__RUH2624 4 4
Acinetobacter_sp.__SH024 5 5
Acinetobacter_calcoaceticus_ruh2202 5 5
Acinetobacter_baumannii_ZW85-1 6 6
Acinetobacter_baumannii_TYTH-1 4 4
Acinetobacter_baumannii_BJAB0868 4 4
Acinetobacter_baumannii_BJAB0715 4 4
Acinetobacter_baumannii_BJAB07104 4 4
Acinetobacter_baumannii_TCDC-AB0715 3 3
Acinetobacter_baumannii_D1279779 3 3
Acinetobacter_baumannii_MDR-TJ 4 4
Acinetobacter_baumannii_1656-2 4 4
Acinetobacter_baumannii__ATCC_19606 5 5
Acinetobacter_baumannii_AB307-0294 4 4
Acinetobacter_baumannii_AYE 4 4
Acinetobacter_baumannii_SDF 4 4
Acinetobacter_baumannii_MDR-ZJ06 4 4
Acinetobacter_baumannii_AB0057 4 4
Acinetobacter_baumannii_ACICU 4 4
Acinetobacter_radioresistens__SH164 2 2
Acinetobacter_junii__SH205 2 2
Acinetobacter_johnsonii__SH046 3 3
Acinetobacter_lwoffii__SH145 2 2
Methylophaga_sp._JAM7 2 2
Cycloclasticus_zancles_7-ME 1 1
Candidatus_Nitrososphaera_gargensis_Ga9.2 1 1
Caldisphaera_lagunensis_DSM_15908 1 1
Sulfolobus_islandicus_HVE10/4 1 1
Methanomethylovorans_hollandica_DSM_15978 12 10
Methanolobus_psychrophilus_R15 28 12
Methanosarcina_mazei_Tuc01 45 29
Methanoregula_formicica_Methanoregula_formicicum_SMSP 1 1
Archaeoglobus_sulfaticallidus_PM70-1 1 1
Thermococcus_sp._AM4 4 2
Thermococcus_litoralis_DSM_5473 1 1
Candidatus_Methanomassiliicoccus_intestinalis_Issoire-Mx1 5 3
Ferroplasma_acidarmanus_fer1 1 1
Halovivax_ruber_XH-70 14 10
Natrinema_pellirubrum_DSM_15624 8 7
Natronococcus_occultus_SP4 8 7
Natronobacterium_gregoryi_SP2 5 5
Haloquadratum_walsbyi_C23 3 2
Halorhabdus_tiamatea_SARL4B 2 2
Natronomonas_moolapensis_8.8.11 3 3
Haloarcula_hispanica_N601 8 8
Methanococcus_maripaludis_X1 14 7
Methanococcus_maripaludis_C6 5 4
Methanococcus_maripaludis_C7 10 7
Methanococcus_maripaludis_S2 7 5
Methanobacterium_sp._SWAN-1 41 21

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   14 8
Pan_troglodytes_69_2.1.4   (Chimpanzee)   14 8
Gorilla_gorilla_69_3.1   (Western gorilla)   13 8
Pongo_abelii_69_2   (Sumatran orangutan)   14 7
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   14 8
Macaca_mulatta_69_1   (Rhesus monkey)   15 8
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   13 8
Otolemur_garnettii_69_3   (Small-eared galago)   14 8
Microcebus_murinus_69_1   (Gray mouse lemur)   12 7
Rattus_norvegicus_69_3.4   (Norway rat)   13 7
Mus_musculus_69_38   (House mouse)   15 8
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   10 6
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   14 7
Cavia_porcellus_69_3   (Domestic guinea pig)   14 8
Oryctolagus_cuniculus_69_2   (Rabbit)   15 8
Ochotona_princeps_69   (American pika)   13 8
Tupaia_belangeri_69   (Northern tree shrew)   11 7
Sus_scrofa_69_10.2   (Pig)   13 8
Bos_taurus_69_3.1   (Cattle)   13 7
Vicugna_pacos_69_1   (Alpaca)   9 7
Tursiops_truncatus_69_1   (Bottlenose dolphin)   12 7
Mustela_putorius_furo_69_1.0   (Domestic ferret)   14 7
Ailuropoda_melanoleuca_69_1   (Giant panda)   14 8
Canis_familiaris_69_3.1   (Dog)   16 8
Felis_catus_69   (Domestic cat)   10 7
Equus_caballus_69_2   (Horse)   16 8
Myotis_lucifugus_69_2.0   (Little brown bat)   13 6
Pteropus_vampyrus_69_1   (Large flying fox)   12 8
Sorex_araneus_69_1   (European shrew)   8 6
Erinaceus_europaeus_69   (Western European hedgehog)   11 6
Procavia_capensis_69_1   (Cape rock hyrax)   12 7
Loxodonta_africana_69_3   (African savanna elephant)   14 7
Echinops_telfairi_69   (Small Madagascar hedgehog)   11 6
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   8 4
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   7 4
Macropus_eugenii_69_1.0   (Tammar wallaby)   13 8
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   13 8
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   15 8
Ornithorhynchus_anatinus_69_5   (Platypus)   11 9
Petromyzon_marinus_69_7.0   (Sea lamprey)   9 4
Meleagris_gallopavo_69_2   (Turkey)   8 5
Gallus_gallus_69_2   (Chicken)   10 6
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   8 5
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   10 7
Anolis_carolinensis_69_2.0   (Green anole)   11 6
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   14 7
Latimeria_chalumnae_69_1   (Coelacanth)   17 10
Gadus_morhua_69_1   (Atlantic cod)   13 7
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   12 6
Takifugu_rubripes_69_4   (Torafugu)   12 5
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   14 7
Oryzias_latipes_69_1   (Japanese medaka)   13 6
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   12 6
Oreochromis_niloticus_69_1.0   (Nile tilapia)   13 6
Danio_rerio_69_9   (Zebrafish)   17 9
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   13 9
Ciona_intestinalis_69   (Vase tunicate)   10 7
Drosophila_melanogaster_69_5   (Fruit fly)   6 4
Caenorhabditis_elegans_69_215   (Roundworm)   11 4
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   1 1
Arabidopsis_thaliana_10   (Thale cress)   163 163

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   37 21
Homo_sapiens__(NCBI_version)   (Human)   20 11
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   15 8
Loa_loa_v3.3_(Request)   (Eye worm)   9 5
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   6 5
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   4 2
Moniliophthora_perniciosa_FA553__(Genome_survey) 37 36
Picea_sitchensis__(Incomplete)   (Sitka spruce)   5 5
Lotus_japonicus__(Early_assembly) 210 210
Malus_x_domestica_(Duplicate)   (Apple)   308 302
Ricinus_communis__(Early_assembly)   (Castor bean)   137 131
Nicotiana_benthamiana_0.4.4_(Early_draft) 313 285
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   163 161
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   165 163
Phoenix_dactylifera__(Early_draft)   (Date palm)   79 76
Acholeplasma_laidlawii_PG-8A_(duplicate) 3 2
NCBI_plasmid_sequences_(Plasmids) 598 483
STRING_v9.0.5_(STRING) 8504 6871
Uniprot_2018_03_genome 189263 153801
PDB_chains_(SCOP_1.75)_(PDB) 36 36
Protein_Data_Bank_(all_PDB_sequenc) 401 384
NCBI_2017_08_genome 468594 388723
UniProt__viral_sequences_(Viral) 218 210
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 750 737
TargetDB__(Targets) 317 263
NCBI_viral_sequences_(Viral) 331 298
Protozoadb_2010_08_(Protozoadb) 874 649

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.