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Home > SCOP hierarchy > RuBisCo, C-terminal domain > Domain combinations

Domain combinations for RuBisCo, C-terminal domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a RuBisCo, C-terminal domain domain in that genome.

Complete genomes
Genome Number Proteins

Pteropus_vampyrus_76_1 (Large flying fox) 1 1

Selaginella_moellendorffii_ 1 1

Pinus_taeda (Loblolly pine) 1 1

Picea_abies (Norway spruce) 1 1

Theobroma_cacao_B97-61/B2_v1 (Cacao) 1 1

Gossypium_raimondii_v221 7 6

Citrus_clementina_v165 1 1

Thellungiella_halophila_v173 1 1

Brassica_rapa_Chiifu-401_1.2 (Field mustard) 2 2

Arabidopsis_lyrata_ (Lyrate rockcress) 3 3

Arabidopsis_thaliana_10 (Thale cress) 3 3

Carica_papaya_ (Papaya) 3 3

Medicago_truncatula_ (Barrel medic) 15 15

Phaseolus_vulgaris_v186 (French bean) 3 3

Cucumis_sativus_v122 (Cucumber) 2 2

Fragaria_vesca_ (Wild strawberry) 3 3

Malus_domestica_v196 (Apple) 3 3

Manihot_esculenta_v147 (Cassava) 2 2

Populus_trichocarpa_v156 (Black cottonwood) 3 3

Vitis_vinifera_ (Wine grape) 2 2

Mimulus_guttatus_v140 (Spotted monkey flower) 1 1

Solanum_lycopersicum_v.2.3 (Tomato) 10 10

Solanum_tuberosum_ (Potato) 1 1

Actinidia_chinensis_Hongyang_ 3 2

Aquilegia_coerulea_v195 1 1

Triticum_urartu_22 5 5

Triticum_aestivum_22 (Bread wheat) 54 54

Aegilops_tauschii_22 1 1

Brachypodium_distachyon_ (Stiff brome) 4 4

Oryza_barthii_22 (African wild rice) 3 3

Oryza_meridionalis_22 2 2

Oryza_glumaepatula_22 2 2

Oryza_glaberrima (African rice) 10 9

Oryza_brachyantha_22 (Malo sina) 3 3

Oryza_sativa_ssp._japonica_5.0 (Japanese rice) 4 4

Oryza_sativa_v193 (Rice) 4 4

Phyllostachys_heterocyclavar._pubescens (Kikko-chiku) 4 4

Setaria_italica_v164 (Foxtail millet) 1 1

Zea_mays_subsp._mays_ (Maize) 6 6

Zea_mays_v181 (Maize) 8 8

Sorghum_bicolor_ (Sorghum) 4 4

Musa_balbisiana (Balbis banana) 2 2

Musa_acuminata_22 (Wild Malaysian banana) 3 3

Amborella_trichopoda_22 5 5

Asterochloris_sp._Cgr/DA1pho_v1.0 1 1

Ostreococcus_sp._RCC809_ 2 2

Ostreococcus_lucimarinus_CCE9901_ 2 2

Ostreococcus_tauri_ 1 1

Bathycoccus_prasinos_ 2 2

Micromonas_sp._RCC299_ 2 2

Micromonas_pusilla_CCMP1545_v3.0 2 2

Cyanidioschyzon_merolae_strain_10D_22 1 1

Cyanidioschyzon_merolae 1 1

Porphyridium_purpureum_02_2012 1 1

Thalassiosira_pseudonana_CCMP1335 1 1

Symbiodinium_minutum_clade_B1_v1.2 5 4

Leptolyngbya_sp._PCC_7376 1 1

Pseudanabaena_sp._PCC_7367 1 1

Acaryochloris_marina_MBIC11017 1 1

Synechocystis_sp._PCC_6803 1 1

Thermosynechococcus_sp._NK55 1 1

Thermosynechococcus_elongatus_BP-1 1 1

Synechococcus_sp._PCC_7502 1 1

Synechococcus_sp._PCC_6312 1 1

Synechococcus_sp._CC9311 1 1

Synechococcus_elongatus_PCC_7942 1 1

Prochlorococcus_marinus_str._MIT_9515 1 1

Microcoleus_sp._PCC_7113 2 2

Trichodesmium_erythraeum_IMS101 1 1

Geitlerinema_sp._PCC_7407 2 2

Cyanothece_sp._PCC_8802 2 2

Gloeocapsa_sp._PCC_7428 1 1

Halothece_sp._PCC_7418 1 1

Microcystis_aeruginosa_NIES-843 2 2

Gloeobacter_violaceus_PCC_7421 1 1

Rivularia_sp._PCC_7116 2 2

Calothrix_sp._PCC_7507 1 1

Anabaena_variabilis_ATCC_29413 1 1

'Nostoc_azollae'_0708 1 1

Nostoc_sp._PCC_7107 1 1

Nostoc_punctiforme_PCC_73102 1 1

Nostoc_sp._PCC_7120 1 1

Nostoc_sp._PCC_7524 1 1

Anabaena_sp._90 1 1

Acidimicrobium_ferrooxidans_DSM_10331 1 1

Nakamurella_multipartita_DSM_44233 1 1

Geodermatophilus_obscurus_DSM_43160 2 2

Thermomonospora_curvata_DSM_43183 1 1

Pseudonocardia_dioxanivorans_CB1190 1 1

Gordonia_sp._KTR9 1 1

Nocardia_cyriacigeorgica_GUH-2 1 1

Arthrobacter_chlorophenolicus_A6 1 1

Arthrobacter_aurescens_TC1 1 1

Arthrobacter_sp._Rue61a 1 1

Caldilinea_aerophila_DSM_14535_=_NBRC_104270 1 1

Thermomicrobium_roseum_DSM_5159 1 1

Chloroflexus_sp._MS-G 1 1

Oceanithermus_profundus_DSM_14977 1 1

Meiothermus_silvanus_DSM_9946 2 2

Meiothermus_ruber_DSM_1279 1 1

Veillonella_parvula_DSM_2008 1 1

Clostridium_clariflavum_DSM_19732 1 1

Sulfobacillus_acidophilus_DSM_10332 2 2

Thermodesulfobium_narugense_DSM_14796 1 1

Tepidanaerobacter_acetatoxydans_Re1 1 1

Ammonifex_degensii_KC4 1 1

Exiguobacterium_sp._MH3 1 1

Exiguobacterium_sp._AT1b 1 1

Exiguobacterium_sibiricum_255-15 1 1

Kyrpidia_tusciae_DSM_2912 1 1

Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_DSM_446 1 1

Brevibacillus_brevis_NBRC_100599 1 1

Paenibacillus_sp._JDR-2 1 1

Paenibacillus_terrae_HPL-003 1 1

Paenibacillus_mucilaginosus_3016 2 2

Paenibacillus_polymyxa_M1 1 1

Anoxybacillus_flavithermus_WK1 1 1

Geobacillus_thermoleovorans_CCB_US3_UF5 1 1

Geobacillus_kaustophilus_HTA426 1 1

Geobacillus_sp._GHH01 1 1

Geobacillus_sp._WCH70 1 1

Geobacillus_thermodenitrificans_NG80-2 1 1

Bacillus_sp._JS 1 1

Bacillus_amyloliquefaciens_FZB42 1 1

Bacillus_atrophaeus_1942 1 1

Bacillus_subtilis_subsp._subtilis_str._168 1 1

Bacillus_licheniformis_DSM_13_=_ATCC_14580 1 1

Bacillus_weihenstephanensis_KBAB4 1 1

Bacillus_thuringiensis_str._Al_Hakam 1 1

Bacillus_cereus_03BB102 1 1

Bacillus_anthracis_str._A0248 1 1

Bacillus_pseudofirmus_OF4 1 1

Bacillus_clausii_KSM-K16 1 1

Bacillus_pumilus_SAFR-032 1 1

Bacillus_megaterium_DSM_319 1 1

Pelodictyon_phaeoclathratiforme_BU-1 1 1

Chlorobium_luteolum_DSM_273 1 1

Chlorobium_chlorochromatii_CaD3 1 1

Chlorobium_phaeobacteroides_DSM_266 1 1

Chlorobium_phaeovibrioides_DSM_265 1 1

Chlorobium_limicola_DSM_245 1 1

Chlorobaculum_parvum_NCIB_8327 1 1

Chlorobium_tepidum_TLS 1 1

Chloroherpeton_thalassium_ATCC_35110 1 1

Prosthecochloris_aestuarii_DSM_271 1 1

Niastella_koreensis_GR20-10 1 1

Rhodothermus_marinus_DSM_4252 1 1

Dyadobacter_fermentans_DSM_18053 1 1

Pedobacter_heparinus_DSM_2366 1 1

Sphingobacterium_sp._21 1 1

Isosphaera_pallida_ATCC_43644 1 1

Planctomyces_limnophilus_DSM_3776 1 1

Methylacidiphilum_infernorum_V4 1 1

Thermotoga_lettingae_TMO 1 1

Persephonella_marina_EX-H1 1 1

Candidatus_Nitrospira_defluvii 1 1

Leptospirillum_ferrooxidans_C2-3 2 2

Candidatus_Methylomirabilis_oxyfera 2 2

candidate_division_SR1_bacterium_RAAC1_SR1_1 1 1

Acidithiobacillus_ferrivorans_SS3 4 4

Acidithiobacillus_caldus_SM-1 3 3

Acidithiobacillus_ferrooxidans_ATCC_53993 4 4

Desulfovibrio_aespoeensis_Aspo-2 1 1

Dechloromonas_aromatica_RCB 1 1

Azoarcus_sp._KH32C 1 1

Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 1 1

Methylibium_petroleiphilum_PM1 2 2

Thiomonas_arsenitoxydans 2 2

Thiomonas_intermedia_K12 2 2

Rubrivivax_gelatinosus_IL144 1 1

Leptothrix_cholodnii_SP-6 1 1

Burkholderia_phytofirmans_PsJN 1 1

Burkholderia_phymatum_STM815 1 1

Burkholderia_xenovorans_LB400 2 2

Cupriavidus_taiwanensis_LMG_19424 1 1

Cupriavidus_metallidurans_CH34 1 1

Cupriavidus_necator_N-1 2 2

Ralstonia_eutropha_H16 2 2

Burkholderia_sp._RPE64 2 2

Burkholderia_sp._CCGE1002 1 1

Delftia_acidovorans_SPH-1 1 1

Polaromonas_sp._JS666 2 2

Polaromonas_naphthalenivorans_CJ2 1 1

Variovorax_paradoxus_S110 2 2

Rhodoferax_ferrireducens_T118 1 1

Acidovorax_sp._KKS102 1 1

Advenella_kashmirensis_WT001 2 2

Bordetella_bronchiseptica_RB50 1 1

Achromobacter_xylosoxidans_A8 1 1

Thiobacillus_denitrificans_ATCC_25259 2 2

Nitrosospira_multiformis_ATCC_25196 1 1

Nitrosomonas_sp._Is79A3 2 2

Nitrosomonas_eutropha_C91 1 1

Nitrosomonas_europaea_ATCC_19718 1 1

Sideroxydans_lithotrophicus_ES-1 2 2

Gallionella_capsiferriformans_ES-2 1 1

Jannaschia_sp._CCS1 1 1

Rhodobacter_sphaeroides_ATCC_17029 2 2

Rhodobacter_capsulatus_SB_1003 2 2

Paracoccus_denitrificans_PD1222 1 1

Rhodospirillum_photometricum_DSM_122 3 3

Magnetospirillum_magneticum_AMB-1 1 1

Rhodospirillum_centenum_SW 2 2

Rhodospirillum_rubrum_F11 2 2

Azospirillum_lipoferum_4B 1 1

Azospirillum_brasilense_Sp245 1 1

Acidiphilium_multivorum_AIU301 2 2

Acidiphilium_cryptum_JF-5 2 2

Polymorphum_gilvum_SL003B-26A1 1 1

Starkeya_novella_DSM_506 2 2

Xanthobacter_autotrophicus_Py2 2 2

Azorhizobium_caulinodans_ORS_571 1 1

Methylobacterium_sp._4-46 1 1

Methylobacterium_nodulans_ORS_2060 2 2

Ochrobactrum_anthropi_ATCC_49188 2 2

Sinorhizobium_fredii_NGR234 2 2

Sinorhizobium_medicae_WSM419 2 2

Sinorhizobium_meliloti_AK83 2 2

Rhizobium_etli_CIAT_652 1 1

Rhizobium_leguminosarum_bv._viciae_3841 1 1

Agrobacterium_radiobacter_K84 1 1

Mesorhizobium_opportunistum_WSM2075 2 2

Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 2 2

Mesorhizobium_loti_MAFF303099 1 1

Methylocella_silvestris_BL2 2 2

Rhodomicrobium_vannielii_ATCC_17100 3 3

Oligotropha_carboxidovorans_OM4 1 1

Rhodopseudomonas_palustris_BisA53 4 4

Nitrobacter_winogradskyi_Nb-255 2 2

Nitrobacter_hamburgensis_X14 3 3

Bradyrhizobium_japonicum_USDA_110 1 1

Bradyrhizobium_sp._ORS_278 2 2

Marinomonas_sp._MWYL1 1 1

Marinomonas_mediterranea_MMB-1 1 1

Chromohalobacter_salexigens_DSM_3043 1 1

Halomonas_elongata_DSM_2581 1 1

Methylococcus_capsulatus_str._Bath 1 1

Halothiobacillus_neapolitanus_c2 2 2

Alkalilimnicola_ehrlichii_MLHE-1 2 2

Thioalkalivibrio_sulfidophilus_HL-EbGr7 1 1

Thioalkalivibrio_sp._K90mix 1 1

Halorhodospira_halophila_SL1 2 2

Allochromatium_vinosum_DSM_180 3 3

Thiocystis_violascens_DSM_198 4 4

Nitrosococcus_watsonii_C-113 1 1

Nitrosococcus_halophilus_Nc4 2 2

Nitrosococcus_oceani_ATCC_19707 1 1

Candidatus_Ruthia_magnifica_str._Cm_(Calyptogena_magnifica) 1 1

Candidatus_Vesicomyosocius_okutanii_HA 1 1

Pseudomonas_putida_F1 1 1

Methylophaga_sp._JAM1 1 1

Thiomicrospira_crunogena_XCL-2 3 3

Thioalkalimicrobium_cyclicum_ALM1 1 1

Hyperthermus_butylicus_DSM_5456 1 1

Thermogladius_cellulolyticus_1633 1 1

Ignisphaera_aggregans_DSM_17230 1 1

Thermosphaera_aggregans_DSM_11486 1 1

Staphylothermus_hellenicus_DSM_12710 1 1

Staphylothermus_marinus_F1 1 1

Desulfurococcus_fermentans_DSM_16532 1 1

Desulfurococcus_kamchatkensis_1221n 1 1

Desulfurococcus_mucosus_DSM_2162 1 1

Thermofilum_sp._1910b 1 1

Thermofilum_pendens_Hrk_5 1 1

Methanocella_arvoryzae_MRE50 1 1

Methanocella_conradii_HZ254 1 1

Methanocella_paludicola_SANAE 1 1

Methanosaeta_harundinacea_6Ac 1 1

Methanosaeta_thermophila_PT 1 1

Methanosaeta_concilii_GP6 1 1

Methanosalsum_zhilinae_DSM_4017 1 1

Methanohalobium_evestigatum_Z-7303 1 1

Methanococcoides_burtonii_DSM_6242 1 1

Methanosarcina_acetivorans_C2A 1 1

Methanosarcina_mazei_Go1 1 1

Methanosarcina_barkeri_str._Fusaro 1 1

Methanohalophilus_mahii_DSM_5219 1 1

Methanosphaerula_palustris_E1-9c 1 1

Methanoregula_boonei_6A8 1 1

Methanospirillum_hungatei_JF-1 1 1

Methanocorpusculum_labreanum_Z 1 1

Methanoplanus_petrolearius_DSM_11571 1 1

Methanoculleus_bourgensis_MS2 1 1

Methanoculleus_marisnigri_JR1 1 1

Ferroglobus_placidus_DSM_10642 1 1

Archaeoglobus_profundus_DSM_5631 1 1

Archaeoglobus_veneficus_SNP6 1 1

Archaeoglobus_fulgidus_DSM_4304 2 2

Thermococcus_sp._4557 1 1

Thermococcus_onnurineus_NA1 1 1

Thermococcus_kodakarensis_KOD1 1 1

Thermococcus_gammatolerans_EJ3 1 1

Thermococcus_sibiricus_MM_739 1 1

Thermococcus_barophilus_MP 1 1

Pyrococcus_sp._ST04 1 1

Pyrococcus_yayanosii_CH1 1 1

Pyrococcus_horikoshii_OT3 1 1

Pyrococcus_abyssi_GE5 1 1

Pyrococcus_furiosus_COM1 1 1

Thermoplasmatales_archaeon_BRNA1 1 1

Natrinema_sp._J7-2 1 1

Natrialba_magadii_ATCC_43099 1 1

Halogeometricum_borinquense_DSM_11551 1 1

Haloferax_mediterranei_ATCC_33500 1 1

Haloferax_volcanii_DS2 1 1

Halomicrobium_mukohataei_DSM_12286 1 1

Natronomonas_pharaonis_DSM_2160 1 1

Methanotorris_igneus_Kol_5 1 1

Methanocaldococcus_sp._FS406-22 1 1

Methanocaldococcus_fervens_AG86 1 1

Methanocaldococcus_vulcanius_M7 1 1

Methanocaldococcus_jannaschii_DSM_2661 1 1

Methanothermococcus_okinawensis_IH1 1 1

Aciduliprofundum_sp._MAR08-339 1 1

Aciduliprofundum_boonei_T469 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

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Longest transcript per gene
Genome Number Proteins

Pteropus_vampyrus_69_1 (Large flying fox) 1 1

Arabidopsis_thaliana_10 (Thale cress) 3 3

Others
Genome Number Proteins

Lotus_japonicus__(Early_assembly) 19 19

Malus_x_domestica_(Duplicate) (Apple) 3 3

Ricinus_communis__(Early_assembly) (Castor bean) 7 6

Nicotiana_benthamiana_0.4.4_(Early_draft) 7 6

Solanum_pimpinellifolium_A-1.0_(Early_draft) (Currant tomato) 10 10

Solanum_lycopersicum_v2.3_(Early_assembly) (Tomato) 10 10

Guillardia_theta_(nucleomorph) 1 1

NCBI_plasmid_sequences_(Plasmids) 42 42

STRING_v9.0.5_(STRING) 301 301

Protein_Data_Bank_(all_PDB_sequenc) 567 567

TargetDB__(Targets) 17 17

SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 1208 1208

NCBI_2017_08_genome 6552 6550

Uniprot_2018_03_genome 137160 136891

PDB_chains_(SCOP_1.75)_(PDB) 27 27

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Domain combinations for RuBisCo, C-terminal domain superfamily in groups of genomes