SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for CRAL/TRIO domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a CRAL/TRIO domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   105 103
Pan_troglodytes_76_2.1.4   (Chimpanzee)   25 25
Gorilla_gorilla_76_3.1   (Western gorilla)   33 33
Pongo_abelii_76_2   (Sumatran orangutan)   24 24
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   26 26
Papio_anubis_76   (Olive baboon)   27 27
Macaca_mulatta_76_1   (Rhesus monkey)   36 35
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   60 60
Otolemur_garnettii_76_3   (Small-eared galago)   25 25
Microcebus_murinus_76_1   (Gray mouse lemur)   15 15
Rattus_norvegicus_76_5.0   (Norway rat)   27 27
Mus_musculus_76_38   (House mouse)   60 60
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   18 18
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   22 22
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   26 25
Cavia_porcellus_76_3   (Domestic guinea pig)   23 23
Oryctolagus_cuniculus_76_2   (Rabbit)   22 22
Ochotona_princeps_76   (American pika)   21 20
Tupaia_belangeri_76   (Northern tree shrew)   15 15
Sus_scrofa_76_10.2   (Pig)   25 25
Bos_taurus_76_3.1   (Cattle)   26 26
Ovis_aries_76_3.1   (Sheep)   31 31
Vicugna_pacos_76_1   (Alpaca)   15 15
Tursiops_truncatus_76_1   (Bottlenose dolphin)   24 22
Mustela_putorius_furo_76_1.0   (Domestic ferret)   23 23
Ailuropoda_melanoleuca_76_1   (Giant panda)   26 26
Canis_familiaris_76_3.1   (Dog)   31 31
Felis_catus_76_6.2   (Domestic cat)   23 23
Equus_caballus_76_2   (Horse)   25 25
Myotis_lucifugus_76_2.0   (Little brown bat)   24 24
Pteropus_vampyrus_76_1   (Large flying fox)   22 21
Sorex_araneus_76_1   (European shrew)   13 13
Erinaceus_europaeus_76   (Western European hedgehog)   14 13
Procavia_capensis_76_1   (Cape rock hyrax)   18 18
Loxodonta_africana_76_3   (African savanna elephant)   30 30
Echinops_telfairi_76   (Small Madagascar hedgehog)   15 15
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   37 37
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   14 12
Macropus_eugenii_76_1.0   (Tammar wallaby)   18 16
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   30 30
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   23 23
Ornithorhynchus_anatinus_76_5   (Platypus)   20 20
Saccoglossus_kowalevskii_v3.0 44 44
Petromyzon_marinus_76_7.0   (Sea lamprey)   14 14
Meleagris_gallopavo_76_2   (Turkey)   23 23
Gallus_gallus_76_4   (Chicken)   21 21
Anas_platyrhynchos_76_1.0   (Mallard)   24 24
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   19 19
Ficedula_albicollis_76_1.0   (Collared flycatcher)   20 20
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   28 28
Anolis_carolinensis_76_2.0   (Green anole)   23 23
Xenopus_laevis_   (African clawed frog)   40 40
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   35 35
Latimeria_chalumnae_76_1   (Coelacanth)   25 25
Lepisosteus_oculatus_76   (Spotted gar)   27 27
Gadus_morhua_76_1   (Atlantic cod)   27 27
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   38 38
Takifugu_rubripes_76_4   (Torafugu)   88 88
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   42 42
Oryzias_latipes_76_1   (Japanese medaka)   42 42
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   30 30
Poecilia_formosa_76   (Amazon molly)   33 33
Oreochromis_niloticus_76_1.0   (Nile tilapia)   36 36
Astyanax_mexicanus_76   (Mexican tetra)   24 24
Danio_rerio_76_9   (Zebrafish)   46 46
Oikopleura_dioica 8 8
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   20 20
Ciona_intestinalis_76   (Vase tunicate)   16 16
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   24 24
Adineta_vaga 49 49
Octopus_bimaculoides_280 21 21
Crassostrea_gigas_22   (Pacific oyster)   14 14
Lottia_gigantea_   (Owl limpet)   14 14
Helobdella_robusta_ 11 11
Capitella_sp._I_ 29 28
Danaus_plexippus_OGS1.0   (Monarch butterfly)   53 52
Heliconius_melpomene_   (Postman butterfly)   45 40
Bombyx_mori_   (Domestic silkworm)   47 47
Nasonia_vitripennis_   (Jewel wasp)   24 24
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   38 38
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   27 27
Linepithema_humile_v1.1   (Argentine ant)   35 35
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   28 27
Solenopsis_invicta_v.2.2.3   (Red fire ant)   32 32
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   27 27
Atta_cephalotes_v1.1 30 30
Camponotus_floridanus_v3.3   (Florida carpenter ant)   29 28
Lucilia_cuprina   (Australian sheep blowfly)   39 30
Drosophila_grimshawi_1.3 34 34
Drosophila_willistoni_1.3 33 33
Drosophila_pseudoobscura_2.13 32 32
Drosophila_persimilis_1.3 31 31
Drosophila_suzukii 31 26
Drosophila_yakuba_1.3 33 33
Drosophila_simulans_1.3 32 32
Drosophila_sechellia_1.3 38 38
Drosophila_melanogaster_76_5   (Fruit fly)   72 72
Drosophila_erecta_1.3 33 33
Drosophila_ananassae_1.3 33 33
Drosophila_virilis_1.2 33 33
Drosophila_mojavensis_1.3 33 33
Megaselia_scalaris_22 11 11
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   59 59
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   83 81
Anopheles_darlingi_22   (American malaria mosquito)   42 39
Anopheles_gambiae_49_3j   (African malaria mosquito)   56 55
Tribolium_castaneum_3.0   (Red flour beetle)   59 55
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   25 25
Acyrthosiphon_pisum_   (Pea aphid)   29 29
Rhodnius_prolixus_22 47 47
Daphnia_pulex_   (Common water flea)   56 55
Strigamia_maritima_22 20 18
Sarcoptes_scabiei 14 14
Tetranychus_urticae_   (Two-spotted spider mite)   37 37
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   56 53
Pristionchus_pacificus_ 15 15
Meloidogyne_incognita_   (Southern root-knot nematode)   10 10
Meloidogyne_hapla_ 9 9
Onchocerca_volvulus_22 13 13
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   14 14
Caenorhabditis_japonica_ 13 13
Caenorhabditis_brenneri_ 20 20
Caenorhabditis_remanei_ 15 15
Caenorhabditis_elegans_76_235   (Roundworm)   25 25
Caenorhabditis_briggsae_2 16 16
Trichinella_spiralis_22 9 9
Hymenolepis_microstoma_ 9 9
Echinococcus_multilocularis_ 12 12
Echinococcus_granulosus_ 15 15
Taenia_solium_   (Pork tapeworm)   13 13
Schistosoma_mansoni_ 12 12
Mnemiopsis_leidyi   (Sea walnut)   6 6
Thelohanellus_kitauei 2 2
Acropora_digitifera_v1.0 5 5
Nematostella_vectensis_1.0   (Starlet sea anemone)   15 15
Hydra_vulgaris 10 10
Amphimedon_queenslandica 12 12
Trichoplax_adhaerens_ 18 17
Proterospongia_sp._ATCC_50818_ 11 11
Monosiga_brevicollis_ 12 12
Sphaeroforma_arctica_JP610_ 12 12
Capsaspora_owczarzaki_ATCC_30864_ 16 16
Conidiobolus_coronatus_NRRL28638_v1.0 18 18
Mortierella_verticillata_NRRL_6337_ 15 14
Phycomyces_blakesleeanus_ 13 13
Rhizopus_oryzae_RA_99-880_ 17 17
Mucor_circinelloides_ 16 16
Rhizomucor_miehei_CAU432_ 10 10
Malassezia_globosa_CBS_7966_ 12 12
Sporisorium_reilianum_22 9 9
Ustilago_maydis_ 9 9
Mixia_osmundae_IAM_14324_v1.0 9 9
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 11 11
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 10 10
Melampsora_laricis-populina_ 10 10
Rhodotorula_graminis_WP1_v1.0 4 4
Sporobolomyces_roseus_IAM_13481_ 5 5
Microbotryum_violaceum_22 8 8
Wallemia_sebi_v1.0 4 4
Sphaerobolus_stellatus_v1.0 13 13
Piloderma_croceum_F_1598_v1.0 9 9
Serpula_lacrymans_var._lacrymans_S7.9_ 6 6
Coniophora_puteana 7 7
Hydnomerulius_pinastri_v2.0 8 8
Paxillus_rubicundulus_Ve08.2h10_v1.0 8 8
Pisolithus_microcarpus_441_v1.0 7 7
Pisolithus_tinctorius_Marx_270_v1.0 7 7
Scleroderma_citrinum_Foug_A_v1.0 7 7
Coprinopsis_cinerea_okayama7_130_v3 9 9
Pleurotus_ostreatus_   (Oyster mushroom)   8 8
Amanita_thiersii_Skay4041_v1.0 8 8
Amanita_muscaria_Koide_v1.0   (Fly agaric)   13 13
Galerina_marginata_v1.0 9 9
Hebeloma_cylindrosporum_h7_v2.0 7 7
Laccaria_bicolor_S238N-H82_ 7 7
Agaricus_bisporus_var._bisporus_ 7 7
Schizophyllum_commune_ 7 7
Stereum_hirsutum_FP-91666_SS1__v1.0 8 8
Heterobasidion_annosum_ 7 7
Gloeophyllum_trabeumv1.0 6 6
Punctularia_strigosozonata_v1.0 8 8
Sebacina_vermifera_MAFF_305830_v1.0 6 6
Fomitiporia_mediterranea_v1.0 7 7
Tulasnella_calospora_AL13/4D_v1.0 5 5
Postia_placenta_ 16 16
Wolfiporia_cocos_MD-104_SS10__v1.0 11 11
Fomitopsis_pinicolav1.0 9 8
Fomitopsis_pinicola_FP-58527_SS1_v3.0 9 8
Phanerochaete_chrysosporium_RP-78_2.1 8 8
Dichomitus_squalens 7 7
Trametes_versicolor_v1.0 8 8
Tremella_mesenterica_   (Witches' butter)   5 5
Daldinia_eschscholzii_EC12_v1.0 5 5
Apiospora_montagnei_NRRL_25634_v1.0 6 6
Magnaporthe_poae_ATCC_64411_22 3 3
Magnaporthe_grisea_70-15_ 5 5
Podospora_anserina_ 5 5
Sporotrichum_thermophile_ATCC_42464_ 5 5
Thielavia_terrestris_NRRL_8126_ 6 6
Chaetomium_globosum_CBS_148.51_ 6 6
Neurospora_tetrasperma_ 5 5
Neurospora_discreta_FGSC_8579_ 5 5
Neurospora_crassa_OR74A_ 5 5
Cryphonectria_parasitica_   (Chestnut blight fungus)   5 5
Verticillium_albo-atrum_VaMs.102_ 6 6
Verticillium_dahliae_VdLs.17_ 7 7
Acremonium_alcalophilumv_1.0 6 6
Glomerella_graminicola_22 6 6
Fusarium_graminearum_ 7 7
Nectria_haematococca_mpVI_ 6 6
Fusarium_oxysporum_f._sp._lycopersici_4286_ 6 6
Fusarium_verticillioides_7600_ 6 6
Trichoderma_asperellum_CBS_433.97_v1.0 6 6
Trichoderma_atroviride_ 5 5
Trichoderma_citrinoviride_v1.0 5 5
Trichoderma_reesei_1.2 5 5
Trichoderma_virens_Gv29-8_ 6 6
Trichoderma_longibrachiatum_ATCC_18648_v1.0 5 5
Trichoderma_harzianum_CBS_226.95_v1.0 5 5
Amorphotheca_resinae_v1.0   (Creosote fungus)   5 5
Botrytis_cinerea_B05.10_ 4 4
Sclerotinia_sclerotiorum_ 5 5
Blumeria_graminis_22 4 4
Didymella_exigua_CBS_183.55_v1.0 6 6
Leptosphaeria_maculans_22 6 6
Setosphaeria_turcica_v1.0 6 6
Cochliobolus_miyabeanus_ATCC_44560_v1.0 6 6
Cochliobolus_victoriae_FI3_v1.0 6 6
Cochliobolus_carbonum_26-R-13_v1.0 6 6
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   5 5
Alternaria_brassicicola_ 6 6
Cochliobolus_lunatus_m118_v2.0 6 6
Pyrenophora_teres_f._teres_22 6 6
Pyrenophora_tritici-repentis_ 6 6
Stagonospora_nodorum_ 6 6
Mycosphaerella_graminicola_IPO323_ 6 6
Zasmidium_cellare_ATCC_36951_v1.0 8 8
Dothistroma_septosporum 6 6
Septoria_musiva_v1.0 6 6
Mycosphaerella_fijiensis_CIRAD86_ 5 5
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 6 6
Paracoccidioides_brasiliensis_Pb18_ 5 5
Coccidioides_posadasii_RMSCC_3488_ 5 5
Coccidioides_immitis_RS_ 5 5
Ajellomyces_dermatitidis_SLH14081_ 5 5
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 5 5
Microsporum_canis_CBS_113480_ 7 7
Trichophyton_equinum_CBS_127.97_ 6 6
Trichophyton_verrucosum_HKI_0517_ 6 6
Arthroderma_benhamiae_CBS_112371_ 6 6
Trichophyton_tonsurans_CBS_112818_ 7 7
Trichophyton_rubrum_CBS_118892_ 6 6
Uncinocarpus_reesii_1704_ 5 5
Aspergillus_zonatus_v1.0 6 6
Penicillium_chrysogenum_Wisconsin_54-1255_ 9 9
Penicillium_chrysogenum_v1.0 9 9
Aspergillus_acidus_v1.0 7 7
Aspergillus_fumigatus_Af293 8 8
Aspergillus_brasiliensis_v1.0 9 9
Aspergillus_nidulans_FGSC_A4_ 8 8
Aspergillus_sydowii_v1.0 9 9
Aspergillus_versicolor_v1.0 9 9
Aspergillus_glaucus 8 8
Aspergillus_carbonarius_ITEM_5010_ 7 7
Neosartorya_fischeri_NRRL_181_ 8 8
Aspergillus_terreus_NIH2624_ 9 9
Aspergillus_tubingensis_v1.0 7 7
Aspergillus_wentii_v1.0 8 8
Aspergillus_oryzae_RIB40_ 9 9
Aspergillus_niger_22 7 7
Aspergillus_niger_ATCC_1015_ 4 4
Aspergillus_flavus_NRRL3357_ 9 9
Aspergillus_clavatus_NRRL_1_ 7 7
Penicillium_marneffei_ATCC_18224_ 8 8
Tuber_melanosporum_Mel28_22 6 6
Tuber_melanosporum_Vittad_   (Perigord truffle)   6 6
Hansenula_polymorpha_v2.0 5 5
Dekkera_bruxellensis_CBS_2499_v2.0 6 6
Pichia_membranifaciensv1.0 4 4
Candida_tanzawaensis_NRRL_Y-17324__v1.0 5 5
Candida_dubliniensis_CD36_ 5 5
Candida_tropicalis_MYA-3404_ 6 6
Candida_parapsilosis_ 4 4
Candida_albicans_SC5314 4 4
Lodderomyces_elongisporus_NRRL_YB-4239_ 5 5
Babjeviella_inositovora_NRRL_Y-12698_v1.0 6 6
Pichia_stipitis_CBS_6054_ 5 5
Candida_guilliermondii_ATCC_6260_ 6 6
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 6 6
Debaromyces_hansenii 5 5
Wickerhamomyces_anomalus 5 5
Pichia_pastoris_GS115_ 5 5
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 8 8
Yarrowia_lipolytica_CLIB122 9 9
Candida_lusitaniae_ATCC_42720_ 7 7
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 5 5
Vanderwaltozyma_polyspora_DSM_70294_ 5 5
Candida_glabrata_CBS138 7 7
Kluyveromyces_thermotolerans_CBS_6340 5 5
Lachancea_kluyveri_ 5 5
Kluyveromyces_waltii 5 5
Ashbya_gossypii_ATCC_10895_ 5 5
Zygosaccharomyces_rouxii_ 5 5
Saccharomyces_mikatae_MIT 6 6
Saccharomyces_paradoxus_MIT 6 6
Saccharomyces_cerevisiae_76   (Baker's yeast)   6 6
Saccharomyces_bayanus_MIT 6 6
Kluyveromyces_lactis 4 4
Schizosaccharomyces_cryophilus_OY26_22 6 6
Schizosaccharomyces_octosporus_yFS286_ 6 6
Schizosaccharomyces_japonicus_yFS275_ 5 5
Schizosaccharomyces_pombe   (Fission yeast)   6 6
Catenaria_anguillulae_PL171_v1.0 6 6
Allomyces_macrogynus_ATCC_38327_ 15 14
Spizellomyces_punctatus_DAOM_BR117_ 10 10
Dictyostelium_discoideum 9 9
Dictyostelium_purpureum_ 9 9
Entamoeba_dispar_1.2 1 1
Entamoeba_invadens_1.2 3 3
Entamoeba_histolytica_1 1 1
Selaginella_moellendorffii_ 32 32
Pinus_taeda   (Loblolly pine)   32 32
Picea_abies   (Norway spruce)   13 13
Eucalyptus_grandis_v201   (Rose gum)   65 65
Theobroma_cacao_B97-61/B2_v1   (Cacao)   28 28
Gossypium_raimondii_v221 193 191
Citrus_clementina_v165 44 44
Citrus_sinensis_v154   (Sweet orange)   63 63
Thellungiella_halophila_v173 41 41
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   55 54
Capsella_rubella_v183 33 33
Arabidopsis_lyrata_   (Lyrate rockcress)   35 35
Arabidopsis_thaliana_10   (Thale cress)   55 55
Carica_papaya_   (Papaya)   28 28
Medicago_truncatula_   (Barrel medic)   72 72
Phaseolus_vulgaris_v186   (French bean)   64 64
Glycine_max_v109   (Soybean)   110 110
Cucumis_sativus_v122   (Cucumber)   66 66
Fragaria_vesca_   (Wild strawberry)   33 32
Malus_domestica_v196   (Apple)   67 66
Prunus_persica_v139   (Peach)   32 32
Linum_usitatissimum_v200   (Flax)   70 70
Manihot_esculenta_v147   (Cassava)   54 54
Populus_trichocarpa_v156   (Black cottonwood)   58 57
Vitis_vinifera_   (Wine grape)   32 32
Mimulus_guttatus_v140   (Spotted monkey flower)   50 50
Solanum_lycopersicum_v.2.3   (Tomato)   36 36
Solanum_tuberosum_   (Potato)   79 79
Actinidia_chinensis_Hongyang_ 50 49
Aquilegia_coerulea_v195 71 71
Triticum_urartu_22 35 35
Triticum_aestivum_22   (Bread wheat)   108 107
Aegilops_tauschii_22 35 35
Brachypodium_distachyon_   (Stiff brome)   51 51
Oryza_barthii_22   (African wild rice)   45 45
Oryza_meridionalis_22 48 47
Oryza_glumaepatula_22 46 46
Oryza_glaberrima   (African rice)   32 32
Oryza_punctata_22 44 44
Oryza_nivara_22 43 43
Oryza_brachyantha_22   (Malo sina)   32 32
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   55 55
Oryza_sativa_v193   (Rice)   56 56
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   54 54
Panicum_virgatum_v202   (Switchgrass)   84 84
Setaria_italica_v164   (Foxtail millet)   49 49
Zea_mays_subsp._mays_   (Maize)   84 84
Zea_mays_v181   (Maize)   97 97
Sorghum_bicolor_   (Sorghum)   35 35
Musa_balbisiana   (Balbis banana)   57 57
Musa_acuminata_22   (Wild Malaysian banana)   61 60
Amborella_trichopoda_22 23 23
Physcomitrella_patens 29 29
Coccomyxa_subellipsoidea_sp._C-169_v2 12 12
Asterochloris_sp._Cgr/DA1pho_v1.0 6 6
Chlorella_variabilis_sp._NC64A_ 12 12
Chlorella_vulgaris_ 12 12
Volvox_carteri_f._nagariensis_ 15 14
Volvox_carteri_v199 14 13
Chlamydomonas_reinhardtii_4.0 19 19
Ostreococcus_sp._RCC809_ 11 11
Ostreococcus_lucimarinus_CCE9901_ 12 12
Ostreococcus_tauri_ 10 10
Bathycoccus_prasinos_ 13 13
Micromonas_sp._RCC299_ 11 11
Micromonas_pusilla_CCMP1545_v3.0 9 9
Cyanidioschyzon_merolae_strain_10D_22 3 3
Cyanidioschyzon_merolae 3 3
Porphyridium_purpureum_02_2012 13 13
Thecamonas_trahens_ATCC_50062_ 14 14
Bigelowiella_natans_CCMP2755_22 33 32
Cyanophora_paradoxa_ 8 8
Leishmania_mexicana_2.4 14 14
Leishmania_major_strain_Friedlin_ 13 13
Leishmania_infantum_JPCM5_2.4 14 14
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 15 15
Trypanosoma_vivax_ 1 1
Trypanosoma_cruzi_strain_CL_Brener 9 9
Trypanosoma_congolense_2.4 8 8
Trypanosoma_brucei_gambiense_v4.1 5 5
Trypanosoma_brucei_TREU927_v4.1 5 5
Ectocarpus_siliculosus 25 23
Aureococcus_anophagefferens_ 18 18
Albugo_laibachii_22 9 9
Pythium_iwayamai_DAOM_BR242034_22 10 10
Pythium_arrhenomanes_ATCC_12531_22 9 9
Pythium_ultimum_v1.7-2 10 10
Pythium_aphanidermatum_DAOM_BR444_22 8 8
Pythium_irregulare_DAOM_BR486_22 10 10
Pythium_vexans_DAOM_BR484_22 8 8
Phytophthora_ramorum_1.1   (Sudden oak death agent)   10 10
Phytophthora_sojae_1.1 9 9
Phytophthora_infestans_T30-4_ 9 9
Phytophthora_capsici_ 11 11
Hyaloperonospora_arabidopsidis_22 7 7
Phaeodactylum_tricornutumCCAP_1055/1 27 27
Fragilariopsis_cylindrus 59 59
Thalassiosira_pseudonana_CCMP1335 20 20
Perkinsus_marinus_ATCC_50983_ 17 17
Paramecium_tetraurelia_ 51 51
Tetrahymena_thermophila_SB210_1_ 22 22
Ichthyophthirius_multifiliis_strain_G5_ 13 13
Cryptosporidium_hominis 8 8
Cryptosporidium_muris 10 10
Cryptosporidium_parvum_Iowa_II 10 10
Neospora_caninum 13 13
Toxoplasma_gondii_VEG 13 13
Toxoplasma_gondii_ME49 13 13
Toxoplasma_gondii_GT1 13 13
Babesia_bovis_T2Bo_ 8 8
Theileria_parva__ 4 4
Theileria_annulata 4 4
Plasmodium_falciparum_3D7_ 6 6
Plasmodium_vivax_SaI-1_7.0 6 6
Plasmodium_knowlesi_strain_H_ 6 6
Plasmodium_yoelii_ssp._yoelii_1_ 5 5
Plasmodium_chabaudi_ 6 6
Plasmodium_berghei_ANKA_ 6 6
Symbiodinium_minutum_clade_B1_v1.2 66 61
Naegleria_gruberi_ 11 11
Guillardia_theta_CCMP2712_v1.0_ 28 28
Emiliania_huxleyi_CCMP1516_ 72 71

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   48 48
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   51 51
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   68 67
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   19 19
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   22 22
Cryptococcus_neoformans_var._grubii_H99_ 5 5
Cryptococcus_neoformans_B-3501A_ 5 5
Cryptococcus_neoformans_JEC21_ 3 3
Paracoccidioides_brasiliensis_Pb01_ 4 4
Paracoccidioides_brasiliensis_Pb03_ 5 5
Coccidioides_posadasii_str._Silveira_ 5 5
Coccidioides_immitis_RMSCC_3703_ 5 5
Coccidioides_immitis_RMSCC_2394_ 5 5
Coccidioides_immitis_H538.4_ 5 5
Ajellomyces_dermatitidis_ER-3_ 5 5
Histoplasma_capsulatum_H143 4 4
Histoplasma_capsulatum_H88 5 5
Histoplasma_capsulatum_G186AR 5 5
Aspergillus_fumigatus_A1163_ 8 8
Candida_albicans_WO-1_ 5 5
Saccharomyces_cerevisiae_UC5 5 5
Saccharomyces_cerevisiae_PW5 6 6
Saccharomyces_cerevisiae_FL100 2 2
Saccharomyces_cerevisiae_CLIB324 3 3
Saccharomyces_cerevisiae_CBS7960 6 6
Saccharomyces_cerevisiae_YJM269 5 5
Saccharomyces_cerevisiae_T7 6 6
Saccharomyces_cerevisiae_FostersB 5 5
Saccharomyces_cerevisiae_FostersO 6 6
Saccharomyces_cerevisiae_VL3 5 5
Saccharomyces_cerevisiae_Vin13 6 6
Saccharomyces_cerevisiae_LalvinQA23 6 6
Saccharomyces_cerevisiae_AWRI796 6 6
Saccharomyces_cerevisiae_Sigma1278b 6 6
Saccharomyces_cerevisiae_W303 6 6
Saccharomyces_cerevisiae_JAY291 6 6
Saccharomyces_cerevisiae_AWRI1631 5 5
Saccharomyces_cerevisiae_YPS163 3 3
Saccharomyces_cerevisiae_M22 4 4
Saccharomyces_cerevisiae_T73 3 3
Saccharomyces_cerevisiae_CLIB215 6 6
Saccharomyces_cerevisiae_Y10 4 4
Saccharomyces_cerevisiae_YJM789_ 6 6
Saccharomyces_cerevisiae_YJM789 6 6
Saccharomyces_cerevisiae_RM11-1a 6 6
Saccharomyces_cerevisiae_RM11-1a_ 6 6
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   6 6
Schizosaccharomyces_pombe_972h-_ 6 6
Batrachochytrium_dendrobatidis_JEL423_ 9 9
Batrachochytrium_dendrobatidis_JAM81_ 9 9
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   29 28
Hordeum_vulgare_22   (Domesticated barley)   98 98
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   34 34
Trypanosoma_brucei_Lister_427_v4.1 5 5
Neospora_caninum_Nc-Liverpool_6.2 13 13
Plasmodium_falciparum_HB3_ 6 6
Plasmodium_falciparum_Dd2_ 4 4

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   29 29
Pan_troglodytes_69_2.1.4   (Chimpanzee)   24 24
Gorilla_gorilla_69_3.1   (Western gorilla)   23 23
Pongo_abelii_69_2   (Sumatran orangutan)   23 23
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   22 22
Macaca_mulatta_69_1   (Rhesus monkey)   24 23
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   29 29
Otolemur_garnettii_69_3   (Small-eared galago)   24 24
Microcebus_murinus_69_1   (Gray mouse lemur)   15 15
Rattus_norvegicus_69_3.4   (Norway rat)   25 25
Mus_musculus_69_38   (House mouse)   22 22
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   18 18
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   21 21
Cavia_porcellus_69_3   (Domestic guinea pig)   23 23
Oryctolagus_cuniculus_69_2   (Rabbit)   22 22
Ochotona_princeps_69   (American pika)   21 20
Tupaia_belangeri_69   (Northern tree shrew)   15 15
Sus_scrofa_69_10.2   (Pig)   22 22
Bos_taurus_69_3.1   (Cattle)   25 25
Vicugna_pacos_69_1   (Alpaca)   15 15
Tursiops_truncatus_69_1   (Bottlenose dolphin)   24 22
Mustela_putorius_furo_69_1.0   (Domestic ferret)   23 23
Ailuropoda_melanoleuca_69_1   (Giant panda)   24 24
Canis_familiaris_69_3.1   (Dog)   25 25
Felis_catus_69   (Domestic cat)   21 21
Equus_caballus_69_2   (Horse)   21 21
Myotis_lucifugus_69_2.0   (Little brown bat)   24 24
Pteropus_vampyrus_69_1   (Large flying fox)   22 21
Sorex_araneus_69_1   (European shrew)   13 13
Erinaceus_europaeus_69   (Western European hedgehog)   14 13
Procavia_capensis_69_1   (Cape rock hyrax)   18 18
Loxodonta_africana_69_3   (African savanna elephant)   23 23
Echinops_telfairi_69   (Small Madagascar hedgehog)   15 15
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   16 14
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   14 12
Macropus_eugenii_69_1.0   (Tammar wallaby)   18 16
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   23 23
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   22 22
Ornithorhynchus_anatinus_69_5   (Platypus)   20 20
Petromyzon_marinus_69_7.0   (Sea lamprey)   11 11
Meleagris_gallopavo_69_2   (Turkey)   22 22
Gallus_gallus_69_2   (Chicken)   23 23
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   19 19
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   23 23
Anolis_carolinensis_69_2.0   (Green anole)   24 24
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   24 24
Latimeria_chalumnae_69_1   (Coelacanth)   19 19
Gadus_morhua_69_1   (Atlantic cod)   27 27
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   31 31
Takifugu_rubripes_69_4   (Torafugu)   30 30
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   28 28
Oryzias_latipes_69_1   (Japanese medaka)   29 29
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   30 30
Oreochromis_niloticus_69_1.0   (Nile tilapia)   29 29
Danio_rerio_69_9   (Zebrafish)   29 29
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   13 13
Ciona_intestinalis_69   (Vase tunicate)   15 15
Drosophila_melanogaster_69_5   (Fruit fly)   33 33
Caenorhabditis_elegans_69_215   (Roundworm)   16 16
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   6 6
Arabidopsis_thaliana_10   (Thale cress)   33 33

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   115 114
Homo_sapiens__(NCBI_version)   (Human)   49 48
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   22 22
Heliconius_numata__(Incomplete) 28 28
Loa_loa_v3.3_(Request)   (Eye worm)   13 13
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   14 14
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   10 10
Moniliophthora_perniciosa_FA553__(Genome_survey) 6 6
Picea_sitchensis__(Incomplete)   (Sitka spruce)   6 6
Lotus_japonicus__(Early_assembly) 38 38
Malus_x_domestica_(Duplicate)   (Apple)   67 66
Ricinus_communis__(Early_assembly)   (Castor bean)   28 28
Nicotiana_benthamiana_0.4.4_(Early_draft) 60 59
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   36 36
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   36 36
Phoenix_dactylifera__(Early_draft)   (Date palm)   23 22
PDB_chains_(SCOP_1.75)_(PDB) 5 5
NCBI_viral_sequences_(Viral) 1 1
UniProt__viral_sequences_(Viral) 2 2
TargetDB__(Targets) 66 66
Protein_Data_Bank_(all_PDB_sequenc) 56 56
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 128 128
Protozoadb_2010_08_(Protozoadb) 215 215
STRING_v9.0.5_(STRING) 2150 2133
Uniprot_2018_03_genome 27088 26667
NCBI_2017_08_genome 27408 27313

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