SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for tRNA-intron endonuclease catalytic domain-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a tRNA-intron endonuclease catalytic domain-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   49 49
Pan_troglodytes_76_2.1.4   (Chimpanzee)   3 3
Gorilla_gorilla_76_3.1   (Western gorilla)   3 3
Pongo_abelii_76_2   (Sumatran orangutan)   4 4
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   4 4
Papio_anubis_76   (Olive baboon)   3 3
Macaca_mulatta_76_1   (Rhesus monkey)   8 8
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   4 4
Otolemur_garnettii_76_3   (Small-eared galago)   4 4
Microcebus_murinus_76_1   (Gray mouse lemur)   3 3
Rattus_norvegicus_76_5.0   (Norway rat)   4 4
Mus_musculus_76_38   (House mouse)   7 7
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   3 3
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   4 4
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   4 4
Cavia_porcellus_76_3   (Domestic guinea pig)   4 4
Oryctolagus_cuniculus_76_2   (Rabbit)   2 2
Ochotona_princeps_76   (American pika)   1 1
Tupaia_belangeri_76   (Northern tree shrew)   2 2
Sus_scrofa_76_10.2   (Pig)   4 4
Bos_taurus_76_3.1   (Cattle)   4 4
Ovis_aries_76_3.1   (Sheep)   3 3
Vicugna_pacos_76_1   (Alpaca)   1 1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   3 3
Mustela_putorius_furo_76_1.0   (Domestic ferret)   3 3
Ailuropoda_melanoleuca_76_1   (Giant panda)   3 3
Canis_familiaris_76_3.1   (Dog)   4 4
Felis_catus_76_6.2   (Domestic cat)   3 3
Equus_caballus_76_2   (Horse)   3 3
Myotis_lucifugus_76_2.0   (Little brown bat)   3 3
Pteropus_vampyrus_76_1   (Large flying fox)   3 3
Sorex_araneus_76_1   (European shrew)   1 1
Erinaceus_europaeus_76   (Western European hedgehog)   2 2
Procavia_capensis_76_1   (Cape rock hyrax)   3 3
Loxodonta_africana_76_3   (African savanna elephant)   4 4
Echinops_telfairi_76   (Small Madagascar hedgehog)   2 2
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   3 3
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   2 2
Macropus_eugenii_76_1.0   (Tammar wallaby)   2 2
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   3 3
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   3 3
Ornithorhynchus_anatinus_76_5   (Platypus)   5 5
Saccoglossus_kowalevskii_v3.0 5 5
Meleagris_gallopavo_76_2   (Turkey)   2 2
Gallus_gallus_76_4   (Chicken)   2 2
Anas_platyrhynchos_76_1.0   (Mallard)   2 2
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   2 2
Ficedula_albicollis_76_1.0   (Collared flycatcher)   2 2
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   2 2
Anolis_carolinensis_76_2.0   (Green anole)   2 2
Xenopus_laevis_   (African clawed frog)   2 2
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   6 6
Latimeria_chalumnae_76_1   (Coelacanth)   3 3
Lepisosteus_oculatus_76   (Spotted gar)   4 4
Gadus_morhua_76_1   (Atlantic cod)   4 4
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   3 3
Takifugu_rubripes_76_4   (Torafugu)   3 3
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   2 2
Oryzias_latipes_76_1   (Japanese medaka)   2 2
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   3 3
Poecilia_formosa_76   (Amazon molly)   3 3
Oreochromis_niloticus_76_1.0   (Nile tilapia)   2 2
Astyanax_mexicanus_76   (Mexican tetra)   2 2
Danio_rerio_76_9   (Zebrafish)   3 3
Oikopleura_dioica 1 1
Ciona_intestinalis_76   (Vase tunicate)   1 1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   4 4
Adineta_vaga 6 6
Octopus_bimaculoides_280 5 5
Crassostrea_gigas_22   (Pacific oyster)   4 3
Lottia_gigantea_   (Owl limpet)   3 3
Helobdella_robusta_ 2 2
Capitella_sp._I_ 2 2
Danaus_plexippus_OGS1.0   (Monarch butterfly)   3 3
Heliconius_melpomene_   (Postman butterfly)   3 3
Bombyx_mori_   (Domestic silkworm)   1 1
Nasonia_vitripennis_   (Jewel wasp)   3 3
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   2 2
Linepithema_humile_v1.1   (Argentine ant)   3 3
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   3 3
Solenopsis_invicta_v.2.2.3   (Red fire ant)   3 3
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   3 3
Atta_cephalotes_v1.1 3 3
Camponotus_floridanus_v3.3   (Florida carpenter ant)   3 3
Lucilia_cuprina   (Australian sheep blowfly)   3 3
Drosophila_grimshawi_1.3 3 3
Drosophila_willistoni_1.3 2 2
Drosophila_pseudoobscura_2.13 3 3
Drosophila_persimilis_1.3 2 2
Drosophila_suzukii 3 3
Drosophila_yakuba_1.3 2 2
Drosophila_simulans_1.3 2 2
Drosophila_sechellia_1.3 2 2
Drosophila_melanogaster_76_5   (Fruit fly)   4 4
Drosophila_erecta_1.3 2 2
Drosophila_ananassae_1.3 2 2
Drosophila_virilis_1.2 3 3
Drosophila_mojavensis_1.3 3 3
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   3 3
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   3 3
Anopheles_darlingi_22   (American malaria mosquito)   1 1
Anopheles_gambiae_49_3j   (African malaria mosquito)   3 3
Tribolium_castaneum_3.0   (Red flour beetle)   2 2
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   3 3
Acyrthosiphon_pisum_   (Pea aphid)   1 1
Rhodnius_prolixus_22 2 2
Daphnia_pulex_   (Common water flea)   3 3
Strigamia_maritima_22 1 1
Sarcoptes_scabiei 2 2
Tetranychus_urticae_   (Two-spotted spider mite)   1 1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   3 3
Pristionchus_pacificus_ 2 2
Meloidogyne_incognita_   (Southern root-knot nematode)   1 1
Meloidogyne_hapla_ 1 1
Onchocerca_volvulus_22 2 2
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   1 1
Caenorhabditis_japonica_ 2 2
Caenorhabditis_brenneri_ 1 1
Caenorhabditis_remanei_ 2 2
Caenorhabditis_elegans_76_235   (Roundworm)   2 2
Caenorhabditis_briggsae_2 2 2
Trichinella_spiralis_22 2 2
Hymenolepis_microstoma_ 2 2
Echinococcus_multilocularis_ 4 4
Echinococcus_granulosus_ 2 2
Taenia_solium_   (Pork tapeworm)   2 2
Schistosoma_mansoni_ 3 3
Mnemiopsis_leidyi   (Sea walnut)   2 2
Thelohanellus_kitauei 2 2
Acropora_digitifera_v1.0 3 3
Nematostella_vectensis_1.0   (Starlet sea anemone)   5 5
Hydra_vulgaris 1 1
Amphimedon_queenslandica 1 1
Proterospongia_sp._ATCC_50818_ 2 2
Monosiga_brevicollis_ 3 3
Sphaeroforma_arctica_JP610_ 2 2
Capsaspora_owczarzaki_ATCC_30864_ 2 2
Conidiobolus_coronatus_NRRL28638_v1.0 2 2
Mortierella_verticillata_NRRL_6337_ 3 3
Phycomyces_blakesleeanus_ 1 1
Mucor_circinelloides_ 2 2
Rhizomucor_miehei_CAU432_ 2 2
Malassezia_globosa_CBS_7966_ 4 4
Sporisorium_reilianum_22 3 3
Ustilago_maydis_ 2 2
Mixia_osmundae_IAM_14324_v1.0 3 3
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 3 3
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 3 3
Melampsora_laricis-populina_ 4 4
Rhodotorula_graminis_WP1_v1.0 2 2
Sporobolomyces_roseus_IAM_13481_ 1 1
Microbotryum_violaceum_22 4 4
Wallemia_sebi_v1.0 3 3
Sphaerobolus_stellatus_v1.0 2 2
Piloderma_croceum_F_1598_v1.0 3 3
Serpula_lacrymans_var._lacrymans_S7.9_ 1 1
Coniophora_puteana 2 2
Hydnomerulius_pinastri_v2.0 3 3
Paxillus_rubicundulus_Ve08.2h10_v1.0 3 3
Pisolithus_microcarpus_441_v1.0 3 3
Pisolithus_tinctorius_Marx_270_v1.0 4 4
Scleroderma_citrinum_Foug_A_v1.0 3 3
Coprinopsis_cinerea_okayama7_130_v3 3 3
Pleurotus_ostreatus_   (Oyster mushroom)   4 4
Amanita_thiersii_Skay4041_v1.0 3 3
Amanita_muscaria_Koide_v1.0   (Fly agaric)   3 3
Galerina_marginata_v1.0 3 3
Hebeloma_cylindrosporum_h7_v2.0 4 4
Laccaria_bicolor_S238N-H82_ 4 4
Agaricus_bisporus_var._bisporus_ 2 2
Schizophyllum_commune_ 3 3
Stereum_hirsutum_FP-91666_SS1__v1.0 2 2
Heterobasidion_annosum_ 3 3
Gloeophyllum_trabeumv1.0 3 3
Punctularia_strigosozonata_v1.0 1 1
Sebacina_vermifera_MAFF_305830_v1.0 4 4
Fomitiporia_mediterranea_v1.0 1 1
Tulasnella_calospora_AL13/4D_v1.0 3 3
Postia_placenta_ 4 4
Wolfiporia_cocos_MD-104_SS10__v1.0 3 3
Fomitopsis_pinicolav1.0 3 3
Fomitopsis_pinicola_FP-58527_SS1_v3.0 3 3
Phanerochaete_chrysosporium_RP-78_2.1 1 1
Dichomitus_squalens 3 3
Trametes_versicolor_v1.0 2 2
Tremella_mesenterica_   (Witches' butter)   3 3
Daldinia_eschscholzii_EC12_v1.0 3 3
Apiospora_montagnei_NRRL_25634_v1.0 3 3
Magnaporthe_poae_ATCC_64411_22 1 1
Magnaporthe_grisea_70-15_ 3 3
Podospora_anserina_ 3 3
Sporotrichum_thermophile_ATCC_42464_ 3 3
Thielavia_terrestris_NRRL_8126_ 3 3
Chaetomium_globosum_CBS_148.51_ 3 3
Neurospora_tetrasperma_ 3 3
Neurospora_discreta_FGSC_8579_ 1 1
Neurospora_crassa_OR74A_ 3 3
Cryphonectria_parasitica_   (Chestnut blight fungus)   2 2
Verticillium_albo-atrum_VaMs.102_ 2 2
Verticillium_dahliae_VdLs.17_ 2 2
Acremonium_alcalophilumv_1.0 3 3
Glomerella_graminicola_22 3 3
Fusarium_graminearum_ 3 3
Nectria_haematococca_mpVI_ 2 2
Fusarium_oxysporum_f._sp._lycopersici_4286_ 3 3
Fusarium_verticillioides_7600_ 2 2
Trichoderma_asperellum_CBS_433.97_v1.0 3 3
Trichoderma_atroviride_ 3 3
Trichoderma_citrinoviride_v1.0 3 3
Trichoderma_reesei_1.2 3 3
Trichoderma_virens_Gv29-8_ 3 3
Trichoderma_longibrachiatum_ATCC_18648_v1.0 2 2
Trichoderma_harzianum_CBS_226.95_v1.0 3 3
Amorphotheca_resinae_v1.0   (Creosote fungus)   3 3
Botrytis_cinerea_B05.10_ 3 3
Sclerotinia_sclerotiorum_ 3 3
Blumeria_graminis_22 3 3
Didymella_exigua_CBS_183.55_v1.0 3 3
Leptosphaeria_maculans_22 3 3
Setosphaeria_turcica_v1.0 3 3
Cochliobolus_miyabeanus_ATCC_44560_v1.0 3 3
Cochliobolus_victoriae_FI3_v1.0 3 3
Cochliobolus_carbonum_26-R-13_v1.0 3 3
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   3 3
Alternaria_brassicicola_ 3 3
Cochliobolus_lunatus_m118_v2.0 3 3
Pyrenophora_teres_f._teres_22 3 3
Pyrenophora_tritici-repentis_ 3 3
Stagonospora_nodorum_ 3 3
Mycosphaerella_graminicola_IPO323_ 3 3
Zasmidium_cellare_ATCC_36951_v1.0 3 3
Dothistroma_septosporum 3 3
Septoria_musiva_v1.0 3 3
Mycosphaerella_fijiensis_CIRAD86_ 2 2
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 3 3
Paracoccidioides_brasiliensis_Pb18_ 3 3
Coccidioides_posadasii_RMSCC_3488_ 3 3
Coccidioides_immitis_RS_ 3 3
Ajellomyces_dermatitidis_SLH14081_ 3 3
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 2 2
Microsporum_canis_CBS_113480_ 3 3
Trichophyton_equinum_CBS_127.97_ 3 3
Trichophyton_verrucosum_HKI_0517_ 3 3
Arthroderma_benhamiae_CBS_112371_ 3 3
Trichophyton_tonsurans_CBS_112818_ 3 3
Trichophyton_rubrum_CBS_118892_ 3 3
Uncinocarpus_reesii_1704_ 3 3
Aspergillus_zonatus_v1.0 3 3
Penicillium_chrysogenum_Wisconsin_54-1255_ 3 3
Penicillium_chrysogenum_v1.0 3 3
Aspergillus_acidus_v1.0 3 3
Aspergillus_fumigatus_Af293 3 3
Aspergillus_brasiliensis_v1.0 3 3
Aspergillus_nidulans_FGSC_A4_ 3 3
Aspergillus_sydowii_v1.0 3 3
Aspergillus_versicolor_v1.0 3 3
Aspergillus_glaucus 3 3
Aspergillus_carbonarius_ITEM_5010_ 3 3
Neosartorya_fischeri_NRRL_181_ 3 3
Aspergillus_terreus_NIH2624_ 3 3
Aspergillus_tubingensis_v1.0 3 3
Aspergillus_wentii_v1.0 3 3
Aspergillus_oryzae_RIB40_ 2 2
Aspergillus_niger_22 3 3
Aspergillus_niger_ATCC_1015_ 3 3
Aspergillus_flavus_NRRL3357_ 3 3
Aspergillus_clavatus_NRRL_1_ 3 3
Penicillium_marneffei_ATCC_18224_ 3 3
Tuber_melanosporum_Mel28_22 3 3
Tuber_melanosporum_Vittad_   (Perigord truffle)   3 3
Hansenula_polymorpha_v2.0 1 1
Dekkera_bruxellensis_CBS_2499_v2.0 3 3
Pichia_membranifaciensv1.0 2 2
Candida_tanzawaensis_NRRL_Y-17324__v1.0 3 3
Candida_dubliniensis_CD36_ 3 3
Candida_tropicalis_MYA-3404_ 4 4
Candida_parapsilosis_ 3 3
Candida_albicans_SC5314 3 3
Lodderomyces_elongisporus_NRRL_YB-4239_ 3 3
Babjeviella_inositovora_NRRL_Y-12698_v1.0 3 3
Pichia_stipitis_CBS_6054_ 3 3
Candida_guilliermondii_ATCC_6260_ 2 2
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 3 3
Debaromyces_hansenii 3 3
Wickerhamomyces_anomalus 2 2
Pichia_pastoris_GS115_ 3 3
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 2 2
Yarrowia_lipolytica_CLIB122 3 3
Candida_lusitaniae_ATCC_42720_ 2 2
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 3 3
Vanderwaltozyma_polyspora_DSM_70294_ 3 3
Candida_glabrata_CBS138 3 3
Kluyveromyces_thermotolerans_CBS_6340 3 3
Lachancea_kluyveri_ 3 3
Kluyveromyces_waltii 3 3
Ashbya_gossypii_ATCC_10895_ 3 3
Zygosaccharomyces_rouxii_ 3 3
Saccharomyces_mikatae_MIT 2 2
Saccharomyces_paradoxus_MIT 3 3
Saccharomyces_cerevisiae_76   (Baker's yeast)   3 3
Saccharomyces_bayanus_MIT 3 3
Kluyveromyces_lactis 3 3
Schizosaccharomyces_cryophilus_OY26_22 3 3
Schizosaccharomyces_octosporus_yFS286_ 3 3
Schizosaccharomyces_japonicus_yFS275_ 3 3
Schizosaccharomyces_pombe   (Fission yeast)   3 3
Catenaria_anguillulae_PL171_v1.0 2 2
Allomyces_macrogynus_ATCC_38327_ 3 3
Spizellomyces_punctatus_DAOM_BR117_ 3 3
Dictyostelium_discoideum 4 4
Dictyostelium_purpureum_ 3 3
Entamoeba_dispar_1.2 2 2
Entamoeba_invadens_1.2 1 1
Entamoeba_histolytica_1 2 2
Eucalyptus_grandis_v201   (Rose gum)   1 1
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1 1
Gossypium_raimondii_v221 3 3
Citrus_clementina_v165 1 1
Citrus_sinensis_v154   (Sweet orange)   1 1
Thellungiella_halophila_v173 2 2
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   2 2
Capsella_rubella_v183 2 2
Arabidopsis_lyrata_   (Lyrate rockcress)   2 2
Arabidopsis_thaliana_10   (Thale cress)   4 4
Carica_papaya_   (Papaya)   1 1
Medicago_truncatula_   (Barrel medic)   6 6
Phaseolus_vulgaris_v186   (French bean)   1 1
Glycine_max_v109   (Soybean)   5 5
Cucumis_sativus_v122   (Cucumber)   1 1
Fragaria_vesca_   (Wild strawberry)   2 2
Malus_domestica_v196   (Apple)   6 6
Prunus_persica_v139   (Peach)   1 1
Linum_usitatissimum_v200   (Flax)   2 2
Manihot_esculenta_v147   (Cassava)   2 2
Populus_trichocarpa_v156   (Black cottonwood)   2 2
Vitis_vinifera_   (Wine grape)   1 1
Mimulus_guttatus_v140   (Spotted monkey flower)   9 9
Solanum_lycopersicum_v.2.3   (Tomato)   1 1
Solanum_tuberosum_   (Potato)   3 3
Actinidia_chinensis_Hongyang_ 3 3
Aquilegia_coerulea_v195 7 5
Triticum_urartu_22 2 2
Triticum_aestivum_22   (Bread wheat)   6 6
Aegilops_tauschii_22 2 2
Brachypodium_distachyon_   (Stiff brome)   1 1
Oryza_barthii_22   (African wild rice)   2 2
Oryza_meridionalis_22 2 2
Oryza_glumaepatula_22 2 2
Oryza_glaberrima   (African rice)   2 2
Oryza_punctata_22 4 4
Oryza_nivara_22 5 5
Oryza_brachyantha_22   (Malo sina)   2 2
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   3 3
Oryza_sativa_v193   (Rice)   3 3
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   2 2
Panicum_virgatum_v202   (Switchgrass)   3 3
Setaria_italica_v164   (Foxtail millet)   1 1
Zea_mays_subsp._mays_   (Maize)   2 2
Zea_mays_v181   (Maize)   3 3
Sorghum_bicolor_   (Sorghum)   1 1
Musa_balbisiana   (Balbis banana)   1 1
Musa_acuminata_22   (Wild Malaysian banana)   1 1
Amborella_trichopoda_22 1 1
Physcomitrella_patens 1 1
Asterochloris_sp._Cgr/DA1pho_v1.0 2 2
Chlorella_vulgaris_ 1 1
Volvox_carteri_f._nagariensis_ 1 1
Volvox_carteri_v199 1 1
Chlamydomonas_reinhardtii_4.0 2 2
Ostreococcus_sp._RCC809_ 2 2
Ostreococcus_lucimarinus_CCE9901_ 2 2
Ostreococcus_tauri_ 1 1
Bathycoccus_prasinos_ 2 2
Micromonas_sp._RCC299_ 2 2
Micromonas_pusilla_CCMP1545_v3.0 2 2
Cyanidioschyzon_merolae_strain_10D_22 3 3
Cyanidioschyzon_merolae 3 3
Porphyridium_purpureum_02_2012 3 3
Thecamonas_trahens_ATCC_50062_ 2 2
Bigelowiella_natans_CCMP2755_22 2 2
Giardia_lamblia_2.3 2 2
Cyanophora_paradoxa_ 1 1
Leishmania_mexicana_2.4 1 1
Leishmania_major_strain_Friedlin_ 1 1
Leishmania_infantum_JPCM5_2.4 1 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 1 1
Trypanosoma_vivax_ 1 1
Trypanosoma_cruzi_strain_CL_Brener 1 1
Trypanosoma_congolense_2.4 2 2
Trypanosoma_brucei_gambiense_v4.1 2 2
Trypanosoma_brucei_TREU927_v4.1 2 2
Ectocarpus_siliculosus 1 1
Aureococcus_anophagefferens_ 1 1
Albugo_laibachii_22 2 2
Pythium_arrhenomanes_ATCC_12531_22 1 1
Pythium_ultimum_v1.7-2 2 2
Pythium_aphanidermatum_DAOM_BR444_22 1 1
Pythium_irregulare_DAOM_BR486_22 1 1
Pythium_vexans_DAOM_BR484_22 1 1
Phytophthora_infestans_T30-4_ 1 1
Hyaloperonospora_arabidopsidis_22 2 2
Phaeodactylum_tricornutumCCAP_1055/1 1 1
Fragilariopsis_cylindrus 2 2
Thalassiosira_pseudonana_CCMP1335 1 1
Paramecium_tetraurelia_ 2 2
Tetrahymena_thermophila_SB210_1_ 1 1
Cryptosporidium_hominis 1 1
Cryptosporidium_muris 2 2
Cryptosporidium_parvum_Iowa_II 1 1
Toxoplasma_gondii_VEG 2 2
Toxoplasma_gondii_ME49 2 2
Toxoplasma_gondii_GT1 2 2
Theileria_parva__ 2 2
Theileria_annulata 1 1
Plasmodium_falciparum_3D7_ 2 2
Plasmodium_vivax_SaI-1_7.0 2 2
Plasmodium_knowlesi_strain_H_ 2 2
Plasmodium_yoelii_ssp._yoelii_1_ 1 1
Plasmodium_chabaudi_ 2 2
Plasmodium_berghei_ANKA_ 2 2
Symbiodinium_minutum_clade_B1_v1.2 1 1
Naegleria_gruberi_ 1 1
Trichomonas_vaginalis_ 2 2
Guillardia_theta_CCMP2712_v1.0_ 2 2
Emiliania_huxleyi_CCMP1516_ 2 2
Nanoarchaeum_equitans_Kin4-M 2 2
Candidatus_Caldiarchaeum_subterraneum 2 2
Cenarchaeum_symbiosum_A 2 2
Candidatus_Nitrosopumilus_sp._AR2 2 2
Nitrosopumilus_maritimus_SCM1 2 2
Candidatus_Korarchaeum_cryptofilum_OPF8 2 1
Acidilobus_saccharovorans_345-15 2 2
Fervidicoccus_fontis_Kam940 2 2
Pyrolobus_fumarii_1A 2 2
Hyperthermus_butylicus_DSM_5456 2 2
Thermogladius_cellulolyticus_1633 2 2
Ignisphaera_aggregans_DSM_17230 2 2
Aeropyrum_pernix_K1 2 2
Ignicoccus_hospitalis_KIN4/I 2 2
Thermosphaera_aggregans_DSM_11486 1 1
Staphylothermus_hellenicus_DSM_12710 2 2
Staphylothermus_marinus_F1 1 1
Desulfurococcus_fermentans_DSM_16532 1 1
Desulfurococcus_kamchatkensis_1221n 2 2
Desulfurococcus_mucosus_DSM_2162 2 2
Metallosphaera_cuprina_Ar-4 2 2
Metallosphaera_sedula_DSM_5348 2 2
Acidianus_hospitalis_W1 2 2
Sulfolobus_tokodaii_str._7 2 2
Sulfolobus_islandicus_Y.N.15.51 2 2
Sulfolobus_solfataricus_P2 2 2
Sulfolobus_acidocaldarius_DSM_639 2 2
Thermofilum_sp._1910b 2 2
Thermofilum_pendens_Hrk_5 2 2
Vulcanisaeta_moutnovskia_768-28 2 2
Vulcanisaeta_distributa_DSM_14429 2 2
Caldivirga_maquilingensis_IC-167 2 2
Pyrobaculum_sp._1860 2 2
Pyrobaculum_calidifontis_JCM_11548 2 2
Pyrobaculum_arsenaticum_DSM_13514 2 2
Pyrobaculum_oguniense_TE7 2 2
Thermoproteus_neutrophilus_V24Sta 2 2
Pyrobaculum_aerophilum_str._IM2 2 2
Pyrobaculum_islandicum_DSM_4184 2 2
Thermoproteus_uzoniensis_768-20 2 2
Thermoproteus_tenax_Kra_1 2 2
halophilic_archaeon_DL31 2 1
Methanocella_arvoryzae_MRE50 2 1
Methanocella_conradii_HZ254 2 1
Methanocella_paludicola_SANAE 2 1
Methanosaeta_harundinacea_6Ac 2 1
Methanosaeta_thermophila_PT 2 1
Methanosaeta_concilii_GP6 2 1
Methanosalsum_zhilinae_DSM_4017 2 1
Methanohalobium_evestigatum_Z-7303 2 1
Methanococcoides_burtonii_DSM_6242 2 1
Methanosarcina_acetivorans_C2A 2 1
Methanosarcina_mazei_Go1 2 1
Methanosarcina_barkeri_str._Fusaro 2 1
Methanohalophilus_mahii_DSM_5219 2 1
Methanosphaerula_palustris_E1-9c 2 1
Methanoregula_boonei_6A8 2 1
Methanospirillum_hungatei_JF-1 2 1
Methanocorpusculum_labreanum_Z 2 1
Methanoplanus_petrolearius_DSM_11571 2 1
Methanoculleus_bourgensis_MS2 2 1
Methanoculleus_marisnigri_JR1 2 1
Methanopyrus_kandleri_AV19 2 2
Ferroglobus_placidus_DSM_10642 2 1
Archaeoglobus_profundus_DSM_5631 2 1
Archaeoglobus_veneficus_SNP6 2 1
Archaeoglobus_fulgidus_DSM_4304 2 1
Thermococcus_sp._4557 1 1
Thermococcus_onnurineus_NA1 1 1
Thermococcus_kodakarensis_KOD1 1 1
Thermococcus_gammatolerans_EJ3 1 1
Thermococcus_sibiricus_MM_739 1 1
Thermococcus_barophilus_MP 1 1
Pyrococcus_sp._ST04 1 1
Pyrococcus_yayanosii_CH1 1 1
Pyrococcus_horikoshii_OT3 1 1
Pyrococcus_abyssi_GE5 1 1
Pyrococcus_furiosus_COM1 1 1
Thermoplasmatales_archaeon_BRNA1 2 1
Thermoplasma_volcanium_GSS1 1 1
Thermoplasma_acidophilum_DSM_1728 1 1
Picrophilus_torridus_DSM_9790 1 1
Salinarchaeum_sp._Harcht-Bsk1 2 1
Halopiger_xanaduensis_SH-6 2 1
Haloterrigena_turkmenica_DSM_5511 2 1
Natrinema_sp._J7-2 2 1
Natrialba_magadii_ATCC_43099 2 1
Halorubrum_lacusprofundi_ATCC_49239 2 1
Haloquadratum_walsbyi_DSM_16790 2 1
Halogeometricum_borinquense_DSM_11551 2 1
Haloferax_mediterranei_ATCC_33500 2 1
Haloferax_volcanii_DS2 2 1
Halomicrobium_mukohataei_DSM_12286 2 1
Halorhabdus_utahensis_DSM_12940 2 1
Natronomonas_pharaonis_DSM_2160 2 1
Haloarcula_hispanica_ATCC_33960 2 1
Haloarcula_marismortui_ATCC_43049 2 1
Halalkalicoccus_jeotgali_B3 2 1
Halobacterium_salinarum_R1 2 1
Halobacterium_sp._NRC-1 2 1
Methanotorris_igneus_Kol_5 1 1
Methanocaldococcus_sp._FS406-22 1 1
Methanocaldococcus_fervens_AG86 1 1
Methanocaldococcus_vulcanius_M7 1 1
methanocaldococcus_infernus_ME 1 1
Methanocaldococcus_jannaschii_DSM_2661 1 1
Methanothermococcus_okinawensis_IH1 1 1
Methanococcus_aeolicus_Nankai-3 1 1
Methanococcus_maripaludis_C5 1 1
Methanococcus_voltae_A3 1 1
Methanococcus_vannielii_SB 1 1
Methanothermus_fervidus_DSM_2088 1 1
Methanothermobacter_marburgensis_str._Marburg 1 1
Methanothermobacter_thermautotrophicus_str._Delta_H 1 1
Methanosphaera_stadtmanae_DSM_3091 1 1
Methanobrevibacter_sp._AbM4 1 1
Methanobrevibacter_ruminantium_M1 1 1
Methanobrevibacter_smithii_ATCC_35061 1 1
Complete_genome_sequence_of_Methanobacterium_sp._Mb1 1 1
Aciduliprofundum_sp._MAR08-339 2 1
Aciduliprofundum_boonei_T469 2 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   5 5
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   3 3
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   3 3
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   2 2
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   2 2
Cryptococcus_neoformans_var._grubii_H99_ 3 3
Cryptococcus_neoformans_B-3501A_ 3 3
Cryptococcus_neoformans_JEC21_ 3 3
Paracoccidioides_brasiliensis_Pb01_ 3 3
Paracoccidioides_brasiliensis_Pb03_ 3 3
Coccidioides_posadasii_str._Silveira_ 3 3
Coccidioides_immitis_RMSCC_3703_ 3 3
Coccidioides_immitis_RMSCC_2394_ 3 3
Coccidioides_immitis_H538.4_ 3 3
Ajellomyces_dermatitidis_ER-3_ 3 3
Histoplasma_capsulatum_H143 3 3
Histoplasma_capsulatum_H88 3 3
Histoplasma_capsulatum_G186AR 3 3
Aspergillus_fumigatus_A1163_ 3 3
Candida_albicans_WO-1_ 3 3
Saccharomyces_cerevisiae_UC5 3 3
Saccharomyces_cerevisiae_PW5 3 3
Saccharomyces_cerevisiae_FL100 1 1
Saccharomyces_cerevisiae_CLIB382 1 1
Saccharomyces_cerevisiae_CBS7960 3 3
Saccharomyces_cerevisiae_YJM269 1 1
Saccharomyces_cerevisiae_T7 3 3
Saccharomyces_cerevisiae_FostersB 3 3
Saccharomyces_cerevisiae_FostersO 3 3
Saccharomyces_cerevisiae_VL3 2 2
Saccharomyces_cerevisiae_Vin13 3 3
Saccharomyces_cerevisiae_LalvinQA23 3 3
Saccharomyces_cerevisiae_AWRI796 3 3
Saccharomyces_cerevisiae_Sigma1278b 3 3
Saccharomyces_cerevisiae_W303 3 3
Saccharomyces_cerevisiae_JAY291 3 3
Saccharomyces_cerevisiae_AWRI1631 2 2
Saccharomyces_cerevisiae_YPS163 2 2
Saccharomyces_cerevisiae_T73 2 2
Saccharomyces_cerevisiae_CLIB215 3 3
Saccharomyces_cerevisiae_Y10 1 1
Saccharomyces_cerevisiae_YJM789_ 3 3
Saccharomyces_cerevisiae_YJM789 3 3
Saccharomyces_cerevisiae_RM11-1a 3 3
Saccharomyces_cerevisiae_RM11-1a_ 3 3
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   3 3
Schizosaccharomyces_pombe_972h-_ 3 3
Batrachochytrium_dendrobatidis_JEL423_ 2 2
Batrachochytrium_dendrobatidis_JAM81_ 2 2
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1 1
Hordeum_vulgare_22   (Domesticated barley)   3 3
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   2 2
Trypanosoma_brucei_Lister_427_v4.1 2 2
Plasmodium_falciparum_HB3_ 2 2
Plasmodium_falciparum_Dd2_ 2 2
Candidatus_Nitrososphaera_gargensis_Ga9.2 2 2
Candidatus_Nitrosoarchaeum_koreensis_Candidatus_Nitrosopumilus_koreensis_AR1 2 2
Caldisphaera_lagunensis_DSM_15908 2 2
Aeropyrum_camini_SY1_=_JCM_12091 2 2
Sulfolobus_islandicus_LAL14/1 2 2
Sulfolobus_islandicus_REY15A 2 2
Sulfolobus_islandicus_HVE10/4 2 2
Sulfolobus_islandicus_Y.G.57.14 2 2
Sulfolobus_islandicus_L.S.2.15 2 2
Sulfolobus_islandicus_M.16.27 2 2
Sulfolobus_islandicus_M.14.25 2 2
Sulfolobus_islandicus_M.16.4 2 2
Sulfolobus_islandicus_L.D.8.5 2 2
Sulfolobus_solfataricus_98/2 2 2
Sulfolobus_acidocaldarius_SUSAZ 2 2
Sulfolobus_acidocaldarius_Ron12/I 2 2
Sulfolobus_acidocaldarius_N8 2 2
Methanomethylovorans_hollandica_DSM_15978 2 1
Methanolobus_psychrophilus_R15 2 1
Methanoregula_formicica_Methanoregula_formicicum_SMSP 2 1
Archaeoglobus_sulfaticallidus_PM70-1 2 1
Thermococcus_sp._AM4 1 1
Thermococcus_sp._CL1 1 1
Thermococcus_litoralis_DSM_5473 1 1
Pyrococcus_sp._NA2 1 1
Pyrococcus_furiosus_DSM_3638 1 1
Candidatus_Methanomethylophilus_alvus_Mx1201 2 1
Candidatus_Methanomassiliicoccus_intestinalis_Issoire-Mx1 2 1
Ferroplasma_acidarmanus_fer1 2 1
Halovivax_ruber_XH-70 2 1
Natrinema_pellirubrum_DSM_15624 2 1
Natronococcus_occultus_SP4 2 1
Natronobacterium_gregoryi_SP2 2 1
Haloquadratum_walsbyi_C23 2 1
Halorhabdus_tiamatea_SARL4B 2 1
Natronomonas_moolapensis_8.8.11 2 1
Haloarcula_hispanica_N601 2 1
Methanococcus_maripaludis_X1 1 1
Methanococcus_maripaludis_C6 1 1
Methanococcus_maripaludis_C7 1 1
Methanococcus_maripaludis_S2 1 1
Methanobacterium_sp._SWAN-1 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   11 11
Pan_troglodytes_69_2.1.4   (Chimpanzee)   3 3
Gorilla_gorilla_69_3.1   (Western gorilla)   3 3
Pongo_abelii_69_2   (Sumatran orangutan)   3 3
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   4 4
Macaca_mulatta_69_1   (Rhesus monkey)   3 3
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   2 2
Otolemur_garnettii_69_3   (Small-eared galago)   4 4
Microcebus_murinus_69_1   (Gray mouse lemur)   3 3
Rattus_norvegicus_69_3.4   (Norway rat)   3 3
Mus_musculus_69_38   (House mouse)   3 3
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   3 3
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   3 3
Cavia_porcellus_69_3   (Domestic guinea pig)   4 4
Oryctolagus_cuniculus_69_2   (Rabbit)   2 2
Ochotona_princeps_69   (American pika)   1 1
Tupaia_belangeri_69   (Northern tree shrew)   2 2
Sus_scrofa_69_10.2   (Pig)   3 3
Bos_taurus_69_3.1   (Cattle)   3 3
Vicugna_pacos_69_1   (Alpaca)   1 1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   3 3
Mustela_putorius_furo_69_1.0   (Domestic ferret)   3 3
Ailuropoda_melanoleuca_69_1   (Giant panda)   3 3
Canis_familiaris_69_3.1   (Dog)   3 3
Felis_catus_69   (Domestic cat)   2 2
Equus_caballus_69_2   (Horse)   3 3
Myotis_lucifugus_69_2.0   (Little brown bat)   3 3
Pteropus_vampyrus_69_1   (Large flying fox)   3 3
Sorex_araneus_69_1   (European shrew)   1 1
Erinaceus_europaeus_69   (Western European hedgehog)   2 2
Procavia_capensis_69_1   (Cape rock hyrax)   3 3
Loxodonta_africana_69_3   (African savanna elephant)   3 3
Echinops_telfairi_69   (Small Madagascar hedgehog)   2 2
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   2 2
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   2 2
Macropus_eugenii_69_1.0   (Tammar wallaby)   2 2
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   3 3
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   2 2
Ornithorhynchus_anatinus_69_5   (Platypus)   3 3
Meleagris_gallopavo_69_2   (Turkey)   2 2
Gallus_gallus_69_2   (Chicken)   2 2
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   2 2
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   2 2
Anolis_carolinensis_69_2.0   (Green anole)   2 2
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   3 3
Latimeria_chalumnae_69_1   (Coelacanth)   3 3
Gadus_morhua_69_1   (Atlantic cod)   3 3
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   3 3
Takifugu_rubripes_69_4   (Torafugu)   3 3
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   2 2
Oryzias_latipes_69_1   (Japanese medaka)   2 2
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   3 3
Oreochromis_niloticus_69_1.0   (Nile tilapia)   2 2
Danio_rerio_69_9   (Zebrafish)   3 3
Ciona_intestinalis_69   (Vase tunicate)   1 1
Drosophila_melanogaster_69_5   (Fruit fly)   3 3
Caenorhabditis_elegans_69_215   (Roundworm)   2 2
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   3 3
Arabidopsis_thaliana_10   (Thale cress)   2 2

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   64 64
Homo_sapiens__(NCBI_version)   (Human)   9 9
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   3 3
Heliconius_numata__(Incomplete) 2 2
Loa_loa_v3.3_(Request)   (Eye worm)   2 2
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   2 2
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   2 2
Encephalitozoon_intestinalis__(endoparasite) 1 1
Encephalitozoon_cuniculi_(endoparasite) 1 1
Lotus_japonicus__(Early_assembly) 1 1
Malus_x_domestica_(Duplicate)   (Apple)   6 6
Ricinus_communis__(Early_assembly)   (Castor bean)   1 1
Nicotiana_benthamiana_0.4.4_(Early_draft) 2 2
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1 1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1 1
Phoenix_dactylifera__(Early_draft)   (Date palm)   1 1
Guillardia_theta_(nucleomorph) 2 2
NCBI_2017_08_genome 4104 3717
Uniprot_2018_03_genome 5801 5377
PDB_chains_(SCOP_1.75)_(PDB) 6 4
TargetDB__(Targets) 27 27
Protozoadb_2010_08_(Protozoadb) 53 53
Protein_Data_Bank_(all_PDB_sequenc) 72 53
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 147 147
STRING_v9.0.5_(STRING) 395 373

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