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Domain combinations for TATA-box binding protein-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a TATA-box binding protein-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   33 25
Pan_troglodytes_76_2.1.4   (Chimpanzee)   7 4
Gorilla_gorilla_76_3.1   (Western gorilla)   10 6
Pongo_abelii_76_2   (Sumatran orangutan)   7 4
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   9 5
Papio_anubis_76   (Olive baboon)   9 5
Macaca_mulatta_76_1   (Rhesus monkey)   12 9
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   21 14
Otolemur_garnettii_76_3   (Small-eared galago)   7 4
Microcebus_murinus_76_1   (Gray mouse lemur)   7 4
Rattus_norvegicus_76_5.0   (Norway rat)   7 4
Mus_musculus_76_38   (House mouse)   21 12
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   6 4
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   7 4
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   6 4
Cavia_porcellus_76_3   (Domestic guinea pig)   7 4
Oryctolagus_cuniculus_76_2   (Rabbit)   7 4
Ochotona_princeps_76   (American pika)   7 4
Tupaia_belangeri_76   (Northern tree shrew)   6 4
Sus_scrofa_76_10.2   (Pig)   9 5
Bos_taurus_76_3.1   (Cattle)   9 5
Ovis_aries_76_3.1   (Sheep)   9 5
Vicugna_pacos_76_1   (Alpaca)   7 4
Tursiops_truncatus_76_1   (Bottlenose dolphin)   7 4
Mustela_putorius_furo_76_1.0   (Domestic ferret)   7 4
Ailuropoda_melanoleuca_76_1   (Giant panda)   6 4
Canis_familiaris_76_3.1   (Dog)   11 6
Felis_catus_76_6.2   (Domestic cat)   5 4
Equus_caballus_76_2   (Horse)   7 4
Myotis_lucifugus_76_2.0   (Little brown bat)   7 4
Pteropus_vampyrus_76_1   (Large flying fox)   7 4
Sorex_araneus_76_1   (European shrew)   8 5
Erinaceus_europaeus_76   (Western European hedgehog)   5 3
Procavia_capensis_76_1   (Cape rock hyrax)   7 4
Loxodonta_africana_76_3   (African savanna elephant)   9 5
Echinops_telfairi_76   (Small Madagascar hedgehog)   3 3
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   9 5
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   5 3
Macropus_eugenii_76_1.0   (Tammar wallaby)   5 3
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   6 4
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   7 4
Ornithorhynchus_anatinus_76_5   (Platypus)   7 4
Saccoglossus_kowalevskii_v3.0 7 4
Petromyzon_marinus_76_7.0   (Sea lamprey)   4 2
Meleagris_gallopavo_76_2   (Turkey)   9 5
Gallus_gallus_76_4   (Chicken)   7 4
Anas_platyrhynchos_76_1.0   (Mallard)   6 3
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   7 4
Ficedula_albicollis_76_1.0   (Collared flycatcher)   8 5
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   7 4
Anolis_carolinensis_76_2.0   (Green anole)   6 4
Xenopus_laevis_   (African clawed frog)   29 15
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   7 4
Latimeria_chalumnae_76_1   (Coelacanth)   5 3
Lepisosteus_oculatus_76   (Spotted gar)   9 5
Gadus_morhua_76_1   (Atlantic cod)   7 4
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   13 7
Takifugu_rubripes_76_4   (Torafugu)   15 9
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   9 5
Oryzias_latipes_76_1   (Japanese medaka)   9 5
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   7 4
Poecilia_formosa_76   (Amazon molly)   6 4
Oreochromis_niloticus_76_1.0   (Nile tilapia)   10 6
Astyanax_mexicanus_76   (Mexican tetra)   7 4
Danio_rerio_76_9   (Zebrafish)   10 6
Oikopleura_dioica 5 3
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   6 4
Ciona_intestinalis_76   (Vase tunicate)   5 3
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   8 5
Adineta_vaga 17 10
Octopus_bimaculoides_280 8 7
Crassostrea_gigas_22   (Pacific oyster)   8 5
Lottia_gigantea_   (Owl limpet)   2 1
Helobdella_robusta_ 5 3
Capitella_sp._I_ 5 3
Danaus_plexippus_OGS1.0   (Monarch butterfly)   7 4
Heliconius_melpomene_   (Postman butterfly)   7 4
Bombyx_mori_   (Domestic silkworm)   2 2
Nasonia_vitripennis_   (Jewel wasp)   5 3
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   7 5
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   7 4
Linepithema_humile_v1.1   (Argentine ant)   7 4
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   7 4
Solenopsis_invicta_v.2.2.3   (Red fire ant)   7 4
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   7 4
Atta_cephalotes_v1.1 7 4
Camponotus_floridanus_v3.3   (Florida carpenter ant)   7 4
Lucilia_cuprina   (Australian sheep blowfly)   5 3
Drosophila_grimshawi_1.3 16 10
Drosophila_willistoni_1.3 10 6
Drosophila_pseudoobscura_2.13 10 5
Drosophila_persimilis_1.3 12 6
Drosophila_suzukii 11 6
Drosophila_yakuba_1.3 16 11
Drosophila_simulans_1.3 9 5
Drosophila_sechellia_1.3 11 6
Drosophila_melanogaster_76_5   (Fruit fly)   21 11
Drosophila_erecta_1.3 12 7
Drosophila_ananassae_1.3 8 4
Drosophila_virilis_1.2 16 9
Drosophila_mojavensis_1.3 14 8
Megaselia_scalaris_22 3 2
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   8 5
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   9 5
Anopheles_darlingi_22   (American malaria mosquito)   3 2
Anopheles_gambiae_49_3j   (African malaria mosquito)   10 6
Tribolium_castaneum_3.0   (Red flour beetle)   7 4
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   7 4
Acyrthosiphon_pisum_   (Pea aphid)   9 5
Rhodnius_prolixus_22 5 3
Daphnia_pulex_   (Common water flea)   6 4
Strigamia_maritima_22 11 6
Sarcoptes_scabiei 7 4
Tetranychus_urticae_   (Two-spotted spider mite)   28 18
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   5 3
Pristionchus_pacificus_ 5 3
Meloidogyne_incognita_   (Southern root-knot nematode)   15 10
Meloidogyne_hapla_ 9 5
Onchocerca_volvulus_22 5 3
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   7 4
Caenorhabditis_japonica_ 3 2
Caenorhabditis_brenneri_ 5 3
Caenorhabditis_remanei_ 4 2
Caenorhabditis_elegans_76_235   (Roundworm)   8 4
Caenorhabditis_briggsae_2 4 2
Trichinella_spiralis_22 5 3
Hymenolepis_microstoma_ 7 4
Echinococcus_multilocularis_ 7 4
Echinococcus_granulosus_ 7 4
Taenia_solium_   (Pork tapeworm)   7 4
Schistosoma_mansoni_ 10 6
Mnemiopsis_leidyi   (Sea walnut)   3 2
Thelohanellus_kitauei 2 1
Acropora_digitifera_v1.0 3 3
Nematostella_vectensis_1.0   (Starlet sea anemone)   4 3
Hydra_vulgaris 3 2
Amphimedon_queenslandica 3 2
Trichoplax_adhaerens_ 5 3
Proterospongia_sp._ATCC_50818_ 7 4
Monosiga_brevicollis_ 5 3
Sphaeroforma_arctica_JP610_ 2 1
Capsaspora_owczarzaki_ATCC_30864_ 3 2
Conidiobolus_coronatus_NRRL28638_v1.0 3 2
Mortierella_verticillata_NRRL_6337_ 3 2
Phycomyces_blakesleeanus_ 5 3
Rhizopus_oryzae_RA_99-880_ 4 2
Mucor_circinelloides_ 5 3
Rhizomucor_miehei_CAU432_ 3 2
Malassezia_globosa_CBS_7966_ 4 2
Sporisorium_reilianum_22 3 2
Ustilago_maydis_ 3 2
Mixia_osmundae_IAM_14324_v1.0 3 2
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 3 2
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 2 1
Melampsora_laricis-populina_ 3 2
Rhodotorula_graminis_WP1_v1.0 3 2
Sporobolomyces_roseus_IAM_13481_ 3 2
Microbotryum_violaceum_22 3 2
Wallemia_sebi_v1.0 3 2
Sphaerobolus_stellatus_v1.0 8 4
Piloderma_croceum_F_1598_v1.0 5 3
Serpula_lacrymans_var._lacrymans_S7.9_ 3 2
Coniophora_puteana 3 2
Hydnomerulius_pinastri_v2.0 3 2
Paxillus_rubicundulus_Ve08.2h10_v1.0 2 1
Pisolithus_microcarpus_441_v1.0 3 2
Pisolithus_tinctorius_Marx_270_v1.0 3 2
Scleroderma_citrinum_Foug_A_v1.0 3 2
Coprinopsis_cinerea_okayama7_130_v3 3 2
Pleurotus_ostreatus_   (Oyster mushroom)   3 2
Amanita_thiersii_Skay4041_v1.0 3 2
Amanita_muscaria_Koide_v1.0   (Fly agaric)   3 2
Galerina_marginata_v1.0 3 2
Hebeloma_cylindrosporum_h7_v2.0 4 3
Laccaria_bicolor_S238N-H82_ 9 8
Agaricus_bisporus_var._bisporus_ 2 1
Schizophyllum_commune_ 3 2
Stereum_hirsutum_FP-91666_SS1__v1.0 5 3
Heterobasidion_annosum_ 3 2
Gloeophyllum_trabeumv1.0 3 2
Punctularia_strigosozonata_v1.0 2 1
Sebacina_vermifera_MAFF_305830_v1.0 3 2
Fomitiporia_mediterranea_v1.0 3 2
Tulasnella_calospora_AL13/4D_v1.0 2 1
Postia_placenta_ 8 5
Wolfiporia_cocos_MD-104_SS10__v1.0 3 2
Fomitopsis_pinicolav1.0 3 2
Fomitopsis_pinicola_FP-58527_SS1_v3.0 3 2
Phanerochaete_chrysosporium_RP-78_2.1 3 2
Dichomitus_squalens 3 2
Trametes_versicolor_v1.0 3 2
Tremella_mesenterica_   (Witches' butter)   3 2
Daldinia_eschscholzii_EC12_v1.0 3 2
Apiospora_montagnei_NRRL_25634_v1.0 3 2
Magnaporthe_poae_ATCC_64411_22 3 2
Magnaporthe_grisea_70-15_ 3 2
Podospora_anserina_ 5 3
Sporotrichum_thermophile_ATCC_42464_ 5 3
Thielavia_terrestris_NRRL_8126_ 5 3
Chaetomium_globosum_CBS_148.51_ 4 3
Neurospora_tetrasperma_ 3 2
Neurospora_discreta_FGSC_8579_ 3 2
Neurospora_crassa_OR74A_ 3 2
Cryphonectria_parasitica_   (Chestnut blight fungus)   3 2
Verticillium_albo-atrum_VaMs.102_ 2 2
Verticillium_dahliae_VdLs.17_ 3 2
Acremonium_alcalophilumv_1.0 3 2
Glomerella_graminicola_22 3 2
Fusarium_graminearum_ 3 2
Nectria_haematococca_mpVI_ 3 2
Fusarium_oxysporum_f._sp._lycopersici_4286_ 3 2
Fusarium_verticillioides_7600_ 2 1
Trichoderma_asperellum_CBS_433.97_v1.0 5 3
Trichoderma_atroviride_ 3 2
Trichoderma_citrinoviride_v1.0 3 2
Trichoderma_reesei_1.2 3 2
Trichoderma_virens_Gv29-8_ 3 2
Trichoderma_longibrachiatum_ATCC_18648_v1.0 3 2
Trichoderma_harzianum_CBS_226.95_v1.0 3 2
Amorphotheca_resinae_v1.0   (Creosote fungus)   3 2
Botrytis_cinerea_B05.10_ 3 2
Sclerotinia_sclerotiorum_ 2 1
Blumeria_graminis_22 3 2
Didymella_exigua_CBS_183.55_v1.0 3 2
Leptosphaeria_maculans_22 3 2
Setosphaeria_turcica_v1.0 3 2
Cochliobolus_miyabeanus_ATCC_44560_v1.0 3 2
Cochliobolus_victoriae_FI3_v1.0 3 2
Cochliobolus_carbonum_26-R-13_v1.0 3 2
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   3 2
Alternaria_brassicicola_ 3 2
Cochliobolus_lunatus_m118_v2.0 3 2
Pyrenophora_teres_f._teres_22 3 2
Pyrenophora_tritici-repentis_ 3 2
Stagonospora_nodorum_ 3 2
Mycosphaerella_graminicola_IPO323_ 5 3
Zasmidium_cellare_ATCC_36951_v1.0 3 2
Dothistroma_septosporum 3 2
Septoria_musiva_v1.0 3 2
Mycosphaerella_fijiensis_CIRAD86_ 3 2
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 3 2
Paracoccidioides_brasiliensis_Pb18_ 3 2
Coccidioides_posadasii_RMSCC_3488_ 3 2
Coccidioides_immitis_RS_ 3 2
Ajellomyces_dermatitidis_SLH14081_ 3 2
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 3 2
Microsporum_canis_CBS_113480_ 3 2
Trichophyton_equinum_CBS_127.97_ 1 1
Trichophyton_verrucosum_HKI_0517_ 3 2
Arthroderma_benhamiae_CBS_112371_ 3 2
Trichophyton_tonsurans_CBS_112818_ 3 2
Trichophyton_rubrum_CBS_118892_ 1 1
Uncinocarpus_reesii_1704_ 3 2
Aspergillus_zonatus_v1.0 4 3
Penicillium_chrysogenum_Wisconsin_54-1255_ 3 2
Penicillium_chrysogenum_v1.0 3 2
Aspergillus_acidus_v1.0 3 2
Aspergillus_fumigatus_Af293 3 2
Aspergillus_brasiliensis_v1.0 3 2
Aspergillus_nidulans_FGSC_A4_ 3 2
Aspergillus_sydowii_v1.0 3 2
Aspergillus_versicolor_v1.0 3 2
Aspergillus_glaucus 3 2
Aspergillus_carbonarius_ITEM_5010_ 3 2
Neosartorya_fischeri_NRRL_181_ 3 2
Aspergillus_terreus_NIH2624_ 3 2
Aspergillus_tubingensis_v1.0 2 1
Aspergillus_wentii_v1.0 3 2
Aspergillus_oryzae_RIB40_ 3 2
Aspergillus_niger_22 3 2
Aspergillus_niger_ATCC_1015_ 1 1
Aspergillus_flavus_NRRL3357_ 3 2
Aspergillus_clavatus_NRRL_1_ 3 2
Penicillium_marneffei_ATCC_18224_ 7 4
Tuber_melanosporum_Mel28_22 3 2
Tuber_melanosporum_Vittad_   (Perigord truffle)   3 2
Hansenula_polymorpha_v2.0 3 2
Dekkera_bruxellensis_CBS_2499_v2.0 3 2
Pichia_membranifaciensv1.0 3 2
Candida_tanzawaensis_NRRL_Y-17324__v1.0 3 2
Candida_dubliniensis_CD36_ 3 2
Candida_tropicalis_MYA-3404_ 3 2
Candida_parapsilosis_ 3 2
Candida_albicans_SC5314 3 2
Lodderomyces_elongisporus_NRRL_YB-4239_ 3 2
Babjeviella_inositovora_NRRL_Y-12698_v1.0 3 2
Pichia_stipitis_CBS_6054_ 3 2
Candida_guilliermondii_ATCC_6260_ 3 2
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 3 2
Debaromyces_hansenii 3 2
Wickerhamomyces_anomalus 2 1
Pichia_pastoris_GS115_ 3 2
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 2 1
Yarrowia_lipolytica_CLIB122 3 2
Candida_lusitaniae_ATCC_42720_ 3 2
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 3 2
Vanderwaltozyma_polyspora_DSM_70294_ 3 2
Candida_glabrata_CBS138 3 2
Kluyveromyces_thermotolerans_CBS_6340 3 2
Lachancea_kluyveri_ 3 2
Kluyveromyces_waltii 3 2
Ashbya_gossypii_ATCC_10895_ 3 2
Zygosaccharomyces_rouxii_ 3 2
Saccharomyces_mikatae_MIT 3 2
Saccharomyces_paradoxus_MIT 3 2
Saccharomyces_cerevisiae_76   (Baker's yeast)   3 2
Saccharomyces_bayanus_MIT 3 2
Kluyveromyces_lactis 3 2
Schizosaccharomyces_cryophilus_OY26_22 2 1
Schizosaccharomyces_octosporus_yFS286_ 2 1
Schizosaccharomyces_japonicus_yFS275_ 3 2
Schizosaccharomyces_pombe   (Fission yeast)   2 1
Catenaria_anguillulae_PL171_v1.0 4 3
Allomyces_macrogynus_ATCC_38327_ 4 2
Spizellomyces_punctatus_DAOM_BR117_ 3 2
Dictyostelium_discoideum 3 2
Dictyostelium_purpureum_ 3 2
Entamoeba_dispar_1.2 6 3
Entamoeba_invadens_1.2 10 5
Entamoeba_histolytica_1 6 3
Selaginella_moellendorffii_ 10 6
Pinus_taeda   (Loblolly pine)   6 4
Picea_abies   (Norway spruce)   6 3
Eucalyptus_grandis_v201   (Rose gum)   8 5
Theobroma_cacao_B97-61/B2_v1   (Cacao)   9 5
Gossypium_raimondii_v221 44 23
Citrus_clementina_v165 7 4
Citrus_sinensis_v154   (Sweet orange)   9 6
Thellungiella_halophila_v173 11 6
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   13 7
Capsella_rubella_v183 5 3
Arabidopsis_lyrata_   (Lyrate rockcress)   5 3
Arabidopsis_thaliana_10   (Thale cress)   9 5
Carica_papaya_   (Papaya)   2 2
Medicago_truncatula_   (Barrel medic)   38 22
Phaseolus_vulgaris_v186   (French bean)   7 4
Glycine_max_v109   (Soybean)   22 12
Cucumis_sativus_v122   (Cucumber)   3 2
Fragaria_vesca_   (Wild strawberry)   17 8
Malus_domestica_v196   (Apple)   13 7
Prunus_persica_v139   (Peach)   7 4
Linum_usitatissimum_v200   (Flax)   10 7
Manihot_esculenta_v147   (Cassava)   7 4
Populus_trichocarpa_v156   (Black cottonwood)   7 4
Vitis_vinifera_   (Wine grape)   2 1
Mimulus_guttatus_v140   (Spotted monkey flower)   8 5
Solanum_lycopersicum_v.2.3   (Tomato)   3 2
Solanum_tuberosum_   (Potato)   1 1
Actinidia_chinensis_Hongyang_ 13 7
Aquilegia_coerulea_v195 29 18
Triticum_urartu_22 7 4
Triticum_aestivum_22   (Bread wheat)   17 9
Aegilops_tauschii_22 6 3
Brachypodium_distachyon_   (Stiff brome)   7 4
Oryza_barthii_22   (African wild rice)   8 4
Oryza_meridionalis_22 7 4
Oryza_glumaepatula_22 9 5
Oryza_glaberrima   (African rice)   9 5
Oryza_punctata_22 15 7
Oryza_nivara_22 7 4
Oryza_brachyantha_22   (Malo sina)   6 3
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   9 6
Oryza_sativa_v193   (Rice)   7 5
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   10 6
Panicum_virgatum_v202   (Switchgrass)   13 7
Setaria_italica_v164   (Foxtail millet)   17 9
Zea_mays_subsp._mays_   (Maize)   24 15
Zea_mays_v181   (Maize)   25 15
Sorghum_bicolor_   (Sorghum)   9 5
Musa_balbisiana   (Balbis banana)   13 7
Musa_acuminata_22   (Wild Malaysian banana)   12 6
Amborella_trichopoda_22 8 6
Physcomitrella_patens 5 3
Coccomyxa_subellipsoidea_sp._C-169_v2 3 2
Asterochloris_sp._Cgr/DA1pho_v1.0 3 2
Chlorella_variabilis_sp._NC64A_ 3 2
Chlorella_vulgaris_ 2 1
Volvox_carteri_f._nagariensis_ 2 1
Volvox_carteri_v199 2 1
Chlamydomonas_reinhardtii_4.0 3 2
Ostreococcus_sp._RCC809_ 3 2
Ostreococcus_lucimarinus_CCE9901_ 3 2
Ostreococcus_tauri_ 2 1
Bathycoccus_prasinos_ 4 2
Micromonas_sp._RCC299_ 3 2
Micromonas_pusilla_CCMP1545_v3.0 3 2
Cyanidioschyzon_merolae_strain_10D_22 3 2
Cyanidioschyzon_merolae 3 2
Porphyridium_purpureum_02_2012 3 2
Thecamonas_trahens_ATCC_50062_ 2 1
Bigelowiella_natans_CCMP2755_22 6 5
Giardia_lamblia_2.3 2 1
Cyanophora_paradoxa_ 8 5
Leishmania_mexicana_2.4 3 2
Leishmania_major_strain_Friedlin_ 3 2
Leishmania_infantum_JPCM5_2.4 3 2
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 3 2
Trypanosoma_vivax_ 1 1
Trypanosoma_cruzi_strain_CL_Brener 3 2
Trypanosoma_congolense_2.4 3 2
Trypanosoma_brucei_gambiense_v4.1 3 2
Trypanosoma_brucei_TREU927_v4.1 3 2
Ectocarpus_siliculosus 5 3
Aureococcus_anophagefferens_ 3 2
Albugo_laibachii_22 6 3
Pythium_iwayamai_DAOM_BR242034_22 7 4
Pythium_arrhenomanes_ATCC_12531_22 3 3
Pythium_ultimum_v1.7-2 7 4
Pythium_aphanidermatum_DAOM_BR444_22 6 3
Pythium_irregulare_DAOM_BR486_22 7 4
Pythium_vexans_DAOM_BR484_22 7 4
Phytophthora_ramorum_1.1   (Sudden oak death agent)   7 4
Phytophthora_sojae_1.1 7 4
Phytophthora_infestans_T30-4_ 6 3
Phytophthora_capsici_ 5 3
Hyaloperonospora_arabidopsidis_22 9 5
Phaeodactylum_tricornutumCCAP_1055/1 2 1
Fragilariopsis_cylindrus 4 3
Thalassiosira_pseudonana_CCMP1335 3 2
Perkinsus_marinus_ATCC_50983_ 10 6
Paramecium_tetraurelia_ 8 4
Tetrahymena_thermophila_SB210_1_ 5 3
Ichthyophthirius_multifiliis_strain_G5_ 2 1
Cryptosporidium_hominis 3 2
Cryptosporidium_muris 5 3
Cryptosporidium_parvum_Iowa_II 5 3
Neospora_caninum 6 3
Toxoplasma_gondii_VEG 5 3
Toxoplasma_gondii_ME49 7 4
Toxoplasma_gondii_GT1 7 4
Babesia_bovis_T2Bo_ 14 8
Theileria_parva__ 6 4
Theileria_annulata 7 4
Plasmodium_falciparum_3D7_ 5 3
Plasmodium_vivax_SaI-1_7.0 5 3
Plasmodium_knowlesi_strain_H_ 5 3
Plasmodium_yoelii_ssp._yoelii_1_ 5 3
Plasmodium_chabaudi_ 5 3
Plasmodium_berghei_ANKA_ 5 3
Symbiodinium_minutum_clade_B1_v1.2 4 2
Naegleria_gruberi_ 2 1
Trichomonas_vaginalis_ 4 2
Guillardia_theta_CCMP2712_v1.0_ 22 14
Emiliania_huxleyi_CCMP1516_ 4 4
Thermobaculum_terrenum_ATCC_BAA-798 1 1
Gloeobacter_violaceus_PCC_7421 1 1
Conexibacter_woesei_DSM_14684 1 1
Ilumatobacter_coccineus 1 1
Thermobispora_bispora_DSM_43833 1 1
Nakamurella_multipartita_DSM_44233 1 1
Modestobacter_marinus 1 1
Blastococcus_saxobsidens_DD2 1 1
Geodermatophilus_obscurus_DSM_43160 1 1
Kineococcus_radiotolerans_SRS30216 1 1
Catenulispora_acidiphila_DSM_44928 1 1
Stackebrandtia_nassauensis_DSM_44728 1 1
Frankia_sp._EAN1pec 1 1
Frankia_alni_ACN14a 1 1
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 2 1
Thermomonospora_curvata_DSM_43183 1 1
Streptosporangium_roseum_DSM_43021 1 1
Kitasatospora_setae_KM-6054 1 1
Streptomyces_coelicolor_A3(2) 2 2
Streptomyces_sp._PAMC26508 2 2
Streptomyces_flavogriseus_ATCC_33331 2 2
Streptomyces_sp._SirexAA-E 2 2
Streptomyces_griseus_subsp._griseus_NBRC_13350 2 2
Streptomyces_bingchenggensis_BCW-1 3 3
Streptomyces_violaceusniger_Tu_4113 2 2
Streptomyces_avermitilis_MA-4680 2 2
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 2 2
Streptomyces_scabiei_87.22 1 1
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 2 2
Actinosynnema_mirum_DSM_43827 2 2
Saccharomonospora_viridis_DSM_43017 1 1
Pseudonocardia_dioxanivorans_CB1190 1 1
Saccharopolyspora_erythraea_NRRL_2338 2 2
Amycolatopsis_mediterranei_U32 2 2
Kribbella_flavida_DSM_17836 2 2
Nocardioides_sp._JS614 1 1
Propionibacterium_propionicum_F0230a 1 1
Microlunatus_phosphovorus_NM-1 1 1
Salinispora_arenicola_CNS-205 1 1
Salinispora_tropica_CNB-440 1 1
Verrucosispora_maris_AB-18-032 1 1
Micromonospora_sp._L5 1 1
Micromonospora_aurantiaca_ATCC_27029 1 1
Actinoplanes_sp._N902-109 1 1
Actinoplanes_sp._SE50/110 1 1
Actinoplanes_missouriensis_431 1 1
Segniliparus_rotundus_DSM_44985 1 1
Gordonia_sp._KTR9 1 1
Gordonia_polyisoprenivorans_VH2 1 1
Gordonia_bronchialis_DSM_43247 1 1
Rhodococcus_jostii_RHA1 1 1
Rhodococcus_equi_103S 2 2
Rhodococcus_opacus_B4 1 1
Rhodococcus_erythropolis_PR4 1 1
Nocardia_cyriacigeorgica_GUH-2 1 1
Nocardia_farcinica_IFM_10152 1 1
Amycolicicoccus_subflavus_DQS3-9A1 1 1
Mycobacterium_massiliense_str._GO_06 1 1
Mycobacterium_abscessus_ATCC_19977 1 1
Mycobacterium_sp._JLS 1 1
Mycobacterium_intracellulare_ATCC_13950 1 1
Mycobacterium_avium_104 1 1
Mycobacterium_vanbaalenii_PYR-1 1 1
Mycobacterium_canettii_CIPT_140010059 1 1
Mycobacterium_africanum_GM041182 1 1
Mycobacterium_tuberculosis_KZN_1435 1 1
Mycobacterium_tuberculosis 1 1
Mycobacterium_bovis_BCG_str._Pasteur_1173P2 1 1
Mycobacterium_rhodesiae_NBB3 1 1
Mycobacterium_ulcerans_Agy99 1 1
Mycobacterium_gilvum_PYR-GCK 1 1
Mycobacterium_chubuense_NBB4 1 1
Mycobacterium_marinum_M 1 1
Mycobacterium_smegmatis_str._MC2_155 1 1
Sanguibacter_keddieii_DSM_10542 1 1
Kytococcus_sedentarius_DSM_20547 2 2
Beutenbergia_cavernae_DSM_12333 1 1
Microbacterium_testaceum_StLB037 1 1
Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382 1 1
Brachybacterium_faecium_DSM_4810 1 1
Isoptericola_variabilis_225 1 1
Xylanimonas_cellulosilytica_DSM_15894 1 1
Cellulomonas_fimi_ATCC_484 1 1
Arthrobacter_phenanthrenivorans_Sphe3 1 1
Arthrobacter_chlorophenolicus_A6 1 1
Arthrobacter_aurescens_TC1 1 1
Kocuria_rhizophila_DC2201 1 1
Arthrobacter_sp._Rue61a 1 1
Arthrobacter_sp._FB24 1 1
Renibacterium_salmoninarum_ATCC_33209 1 1
Anaerococcus_prevotii_DSM_20548 1 1
Finegoldia_magna_ATCC_29328 1 1
Acidaminococcus_intestini_RyC-MR95 1 1
Clostridium_clariflavum_DSM_19732 1 1
Eubacterium_siraeum 1 1
Clostridium_cellulolyticum_H10 1 1
Clostridium_thermocellum_ATCC_27405 1 1
Ethanoligenens_harbinense_YUAN-3 1 1
Ruminococcus_sp. 1 1
Ruminococcus_bromii 1 1
Ruminococcus_albus_7 1 1
Oscillibacter_valericigenes_Sjm18-20 1 1
butyrate-producing_bacterium_SS3/4 1 1
Eubacterium_eligens_ATCC_27750 1 1
Clostridium_difficile_630 1 1
Clostridium_sticklandii_DSM_519 1 1
Filifactor_alocis_ATCC_35896 1 1
Clostridium_saccharolyticum_WM1 1 1
Clostridium_phytofermentans_ISDg 1 1
Clostridium_lentocellum_DSM_5427 1 1
[Ruminococcus]_obeum 1 1
Eubacterium_rectale_M104/1 1 1
Eubacterium_rectale_ATCC_33656 1 1
Coprococcus_sp._ART55/1 1 1
Butyrivibrio_proteoclasticus_B316 1 1
Butyrivibrio_fibrisolvens 1 1
Alkaliphilus_oremlandii_OhILAs 2 2
Alkaliphilus_metalliredigens_QYMF 1 1
Candidatus_Arthromitus_sp._SFB-mouse-Japan 1 1
Clostridium_sp._BNL1100 1 1
Clostridium_novyi_NT 1 1
Clostridium_ljungdahlii_DSM_13528 1 1
Clostridium_kluyveri_DSM_555 1 1
Clostridium_beijerinckii_NCIMB_8052 1 1
Clostridium_tetani_E88 1 1
Clostridium_perfringens_ATCC_13124 1 1
Clostridium_cellulovorans_743B 1 1
Clostridium_botulinum_A_str._ATCC_3502 1 1
Clostridium_acetobutylicum_ATCC_824 1 1
Mahella_australiensis_50-1_BON 1 1
Thermosediminibacter_oceani_DSM_16646 1 1
Caldicellulosiruptor_obsidiansis_OB47 1 1
Caldicellulosiruptor_kronotskyensis_2002 1 1
Caldicellulosiruptor_hydrothermalis_108 1 1
Caldicellulosiruptor_owensensis_OL 1 1
Caldicellulosiruptor_lactoaceticus_6A 1 1
Caldicellulosiruptor_kristjanssonii_177R1B 1 1
Caldicellulosiruptor_saccharolyticus_DSM_8903 1 1
Caldicellulosiruptor_bescii_DSM_6725 1 1
Thermoanaerobacterium_xylanolyticum_LX-11 1 1
Thermoanaerobacterium_thermosaccharolyticum_DSM_571 1 1
Tepidanaerobacter_acetatoxydans_Re1 1 1
Thermoanaerobacter_tengcongensis_MB4 1 1
Thermoanaerobacter_mathranii_subsp._mathranii_str._A3 1 1
Thermoanaerobacter_pseudethanolicus_ATCC_33223 1 1
Thermoanaerobacter_sp._X514 1 1
Thermoanaerobacter_italicus_Ab9 1 1
Thermoanaerobacter_wiegelii_Rt8.B1 1 1
Thermoanaerobacter_brockii_subsp._finnii_Ako-1 1 1
Paenibacillus_sp._JDR-2 1 1
Bacillus_sp._JS 1 1
Bacillus_subtilis_subsp._subtilis_str._168 1 1
Bacillus_clausii_KSM-K16 1 1
Staphylococcus_carnosus_subsp._carnosus_TM300 1 1
Pelodictyon_phaeoclathratiforme_BU-1 1 1
Chlorobium_luteolum_DSM_273 1 1
Chlorobium_chlorochromatii_CaD3 1 1
Chlorobium_phaeobacteroides_DSM_266 1 1
Chlorobium_phaeovibrioides_DSM_265 1 1
Chlorobium_limicola_DSM_245 1 1
Chlorobaculum_parvum_NCIB_8327 1 1
Chlorobium_tepidum_TLS 1 1
Chloroherpeton_thalassium_ATCC_35110 1 1
Prosthecochloris_aestuarii_DSM_271 1 1
Candidatus_Protochlamydia_amoebophila_UWE25 1 1
Parachlamydia_acanthamoebae_UV-7 1 1
Methylacidiphilum_infernorum_V4 1 1
Opitutus_terrae_PB90-1 1 1
Sphaerochaeta_pleomorpha_str._Grapes 1 1
Sphaerochaeta_globus_str._Buddy 1 1
Sphaerochaeta_coccoides_DSM_17374 1 1
Mesotoga_prima_MesG1.Ag.4.2 1 1
Kosmotoga_olearia_TBF_19.5.1 1 1
Caldisericum_exile_AZM16c01 1 1
Candidatus_Chloracidobacterium_thermophilum_B 1 1
Candidatus_Solibacter_usitatus_Ellin6076 1 1
Candidatus_Koribacter_versatilis_Ellin345 1 1
Acidithiobacillus_ferrivorans_SS3 2 2
Acidithiobacillus_ferrooxidans_ATCC_53993 1 1
Bdellovibrio_bacteriovorus_HD100 1 1
Desulfomonile_tiedjei_DSM_6799 1 1
Desulfobacterium_autotrophicum_HRM2 1 1
Sorangium_cellulosum_'So_ce_56' 1 1
Anaeromyxobacter_sp._Fw109-5 1 1
Anaeromyxobacter_dehalogenans_2CP-1 1 1
Stigmatella_aurantiaca_DW4/3-1 1 1
Corallococcus_coralloides_DSM_2259 1 1
Myxococcus_xanthus_DK_1622 1 1
Myxococcus_fulvus_HW-1 1 1
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 1 1
Thiomonas_arsenitoxydans 1 1
Thiomonas_intermedia_K12 1 1
Rubrivivax_gelatinosus_IL144 1 1
Leptothrix_cholodnii_SP-6 1 1
Burkholderia_phytofirmans_PsJN 1 1
Burkholderia_phymatum_STM815 1 1
Ralstonia_eutropha_JMP134 1 1
Cupriavidus_taiwanensis_LMG_19424 1 1
Cupriavidus_metallidurans_CH34 1 1
Cupriavidus_necator_N-1 1 1
Ralstonia_eutropha_H16 1 1
Ralstonia_pickettii_12D 1 1
Ralstonia_solanacearum_CFBP2957 1 1
Burkholderia_sp._RPE64 1 1
Burkholderia_sp._CCGE1002 1 1
Burkholderia_thailandensis_E264 1 1
Burkholderia_pseudomallei_1106a 1 1
Burkholderia_mallei_SAVP1 1 1
Burkholderia_ambifaria_AMMD 1 1
Burkholderia_cenocepacia_HI2424 2 2
Burkholderia_multivorans_ATCC_17616 2 2
Burkholderia_vietnamiensis_G4 1 1
Burkholderia_gladioli_BSR3 1 1
Burkholderia_glumae_BGR1 1 1
Verminephrobacter_eiseniae_EF01-2 1 1
Alicycliphilus_denitrificans_K601 1 1
Ramlibacter_tataouinensis_TTB310 1 1
Polaromonas_sp._JS666 1 1
Polaromonas_naphthalenivorans_CJ2 1 1
Variovorax_paradoxus_S110 1 1
Rhodoferax_ferrireducens_T118 1 1
Acidovorax_ebreus_TPSY 1 1
Acidovorax_sp._KKS102 1 1
Acidovorax_sp._JS42 1 1
Acidovorax_citrulli_AAC00-1 1 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 1 1
Herminiimonas_arsenicoxydans 1 1
Collimonas_fungivorans_Ter331 1 1
Janthinobacterium_sp._Marseille 1 1
Achromobacter_xylosoxidans_A8 1 1
Achromobacter_xylosoxidans 1 1
Nitrosomonas_eutropha_C91 1 1
Brevundimonas_subvibrioides_ATCC_15264 1 1
Caulobacter_sp._K31 1 1
Phenylobacterium_zucineum_HLK1 1 1
Hirschia_baltica_ATCC_49814 1 1
Rhodospirillum_rubrum_F11 1 1
Acidiphilium_multivorum_AIU301 1 1
Acidiphilium_cryptum_JF-5 1 1
Methylobacterium_chloromethanicum_CM4 1 1
Methylobacterium_extorquens_AM1 1 1
Methylobacterium_populi_BJ001 1 1
Methylobacterium_radiotolerans_JCM_2831 1 1
Parvibaculum_lavamentivorans_DS-1 1 1
Aeromonas_veronii_B565 1 1
Aeromonas_salmonicida_subsp._salmonicida_A449 1 1
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 1 1
Vibrio_sp._Ex25 1 1
Vibrio_parahaemolyticus_RIMD_2210633 1 1
Vibrio_splendidus_LGP32 1 1
Vibrio_anguillarum_775 2 2
Vibrio_furnissii_NCTC_11218 1 1
Vibrio_vulnificus_MO6-24/O 1 1
Vibrio_cholerae_O395 1 1
Photobacterium_profundum_SS9 1 1
Ferrimonas_balearica_DSM_9799 1 1
Shewanella_piezotolerans_WP3 1 1
Shewanella_loihica_PV-4 1 1
Shewanella_halifaxensis_HAW-EB4 1 1
Shewanella_sediminis_HAW-EB3 1 1
Shewanella_denitrificans_OS217 1 1
Shewanella_pealeana_ATCC_700345 1 1
Shewanella_oneidensis_MR-1 1 1
Shewanella_baltica_OS185 1 1
Shewanella_woodyi_ATCC_51908 1 1
Shewanella_sp._MR-4 1 1
Shewanella_amazonensis_SB2B 1 1
Shewanella_violacea_DSS12 1 1
Shewanella_frigidimarina_NCIMB_400 1 1
Shewanella_putrefaciens_CN-32 1 1
Pseudoalteromonas_sp._SM9913 1 1
Pseudoalteromonas_atlantica_T6c 1 1
Pseudoalteromonas_haloplanktis_TAC125 1 1
Glaciecola_sp._4H-3-7+YE-5 1 1
Glaciecola_nitratireducens_FR1064 1 1
Alteromonas_sp._SN2 1 1
Kangiella_koreensis_DSM_16069 1 1
Hahella_chejuensis_KCTC_2396 1 1
Marinomonas_mediterranea_MMB-1 1 1
Chromohalobacter_salexigens_DSM_3043 1 1
Halomonas_elongata_DSM_2581 1 1
Rhodanobacter_denitrificans 1 1
Pseudoxanthomonas_spadix_BD-a59 1 1
Pseudoxanthomonas_suwonensis_11-1 1 1
Stenotrophomonas_maltophilia_K279a 1 1
Xanthomonas_axonopodis_pv._citri_str._306 1 1
Xanthomonas_oryzae_pv._oryzae_PXO99A 1 1
Xanthomonas_campestris_pv._campestris_str._B100 1 1
Rahnella_sp._Y9602 1 1
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 1 1
Serratia_sp._AS12 1 1
Serratia_plymuthica_AS9 1 1
Serratia_proteamaculans_568 1 1
Pantoea_sp._At-9b 1 1
Pantoea_vagans_C9-1 1 1
Pantoea_ananatis_LMG_20103 1 1
Erwinia_tasmaniensis_Et1/99 1 1
Erwinia_billingiae_Eb661 1 1
Erwinia_amylovora_ATCC_49946 1 1
Escherichia_blattae_DSM_4481 1 1
Cronobacter_turicensis_z3032 1 1
Cronobacter_sakazakii_ES15 1 1
Enterobacteriaceae_bacterium_strain_FGI_57 1 1
Shigella_sonnei_Ss046 1 1
Shigella_flexneri_5_str._8401 1 1
Shigella_dysenteriae_Sd197 1 1
Shigella_boydii_CDC_3083-94 1 1
Salmonella_bongori_NCTC_12419 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594 1 1
Klebsiella_oxytoca_E718 1 1
Klebsiella_variicola_At-22 1 1
Klebsiella_pneumoniae_NTUH-K2044 1 1
Escherichia_fergusonii_ATCC_35469 1 1
Escherichia_coli_'BL21-Gold(DE3)pLysS_AG' 1 1
Enterobacter_sp._R4-368 1 1
Enterobacter_sp._638 1 1
Enterobacter_asburiae_LF7a 1 1
Enterobacter_cloacae_subsp._dissolvens_SDM 1 1
Citrobacter_rodentium_ICC168 1 1
Citrobacter_koseri_ATCC_BAA-895 1 1
Pseudomonas_sp._UW4 1 1
Pseudomonas_entomophila_L48 1 1
Pseudomonas_stutzeri_A1501 1 1
Pseudomonas_fulva_12-X 1 1
Pseudomonas_protegens_Pf-5 1 1
Pseudomonas_fluorescens_SBW25 1 1
Pseudomonas_mendocina_ymp 1 1
Pseudomonas_aeruginosa_UCBPP-PA14 1 1
Nanoarchaeum_equitans_Kin4-M 2 1
Candidatus_Caldiarchaeum_subterraneum 2 1
Cenarchaeum_symbiosum_A 6 3
Candidatus_Nitrosopumilus_sp._AR2 7 4
Nitrosopumilus_maritimus_SCM1 5 3
Candidatus_Korarchaeum_cryptofilum_OPF8 2 1
Acidilobus_saccharovorans_345-15 2 1
Fervidicoccus_fontis_Kam940 2 1
Pyrolobus_fumarii_1A 2 1
Hyperthermus_butylicus_DSM_5456 2 1
Thermogladius_cellulolyticus_1633 2 1
Ignisphaera_aggregans_DSM_17230 2 1
Aeropyrum_pernix_K1 2 1
Ignicoccus_hospitalis_KIN4/I 2 1
Thermosphaera_aggregans_DSM_11486 2 1
Staphylothermus_hellenicus_DSM_12710 2 1
Staphylothermus_marinus_F1 2 1
Desulfurococcus_fermentans_DSM_16532 2 1
Desulfurococcus_kamchatkensis_1221n 2 1
Desulfurococcus_mucosus_DSM_2162 2 1
Metallosphaera_cuprina_Ar-4 2 1
Metallosphaera_sedula_DSM_5348 2 1
Acidianus_hospitalis_W1 2 1
Sulfolobus_tokodaii_str._7 2 1
Sulfolobus_islandicus_Y.N.15.51 2 1
Sulfolobus_solfataricus_P2 2 1
Sulfolobus_acidocaldarius_DSM_639 2 1
Thermofilum_sp._1910b 2 1
Thermofilum_pendens_Hrk_5 2 1
Vulcanisaeta_moutnovskia_768-28 2 1
Vulcanisaeta_distributa_DSM_14429 2 1
Caldivirga_maquilingensis_IC-167 2 1
Pyrobaculum_sp._1860 2 1
Pyrobaculum_calidifontis_JCM_11548 2 1
Pyrobaculum_arsenaticum_DSM_13514 2 1
Pyrobaculum_oguniense_TE7 2 1
Thermoproteus_neutrophilus_V24Sta 2 1
Pyrobaculum_aerophilum_str._IM2 2 1
Pyrobaculum_islandicum_DSM_4184 2 1
Thermoproteus_uzoniensis_768-20 2 1
Thermoproteus_tenax_Kra_1 2 1
halophilic_archaeon_DL31 5 3
Methanocella_arvoryzae_MRE50 2 1
Methanocella_conradii_HZ254 2 1
Methanocella_paludicola_SANAE 5 3
Methanosaeta_harundinacea_6Ac 2 1
Methanosaeta_thermophila_PT 2 1
Methanosaeta_concilii_GP6 4 2
Methanosalsum_zhilinae_DSM_4017 3 2
Methanohalobium_evestigatum_Z-7303 4 2
Methanococcoides_burtonii_DSM_6242 3 2
Methanosarcina_acetivorans_C2A 7 4
Methanosarcina_mazei_Go1 7 4
Methanosarcina_barkeri_str._Fusaro 5 3
Methanohalophilus_mahii_DSM_5219 3 2
Methanosphaerula_palustris_E1-9c 9 5
Methanoregula_boonei_6A8 7 4
Methanospirillum_hungatei_JF-1 5 3
Methanocorpusculum_labreanum_Z 5 3
Methanoplanus_petrolearius_DSM_11571 6 4
Methanoculleus_bourgensis_MS2 5 3
Methanoculleus_marisnigri_JR1 5 3
Methanopyrus_kandleri_AV19 2 1
Ferroglobus_placidus_DSM_10642 2 1
Archaeoglobus_profundus_DSM_5631 2 1
Archaeoglobus_veneficus_SNP6 2 1
Archaeoglobus_fulgidus_DSM_4304 2 1
Thermococcus_sp._4557 4 2
Thermococcus_onnurineus_NA1 2 1
Thermococcus_kodakarensis_KOD1 2 1
Thermococcus_gammatolerans_EJ3 4 2
Thermococcus_sibiricus_MM_739 2 1
Thermococcus_barophilus_MP 4 2
Pyrococcus_sp._ST04 2 1
Pyrococcus_yayanosii_CH1 2 1
Pyrococcus_horikoshii_OT3 2 1
Pyrococcus_abyssi_GE5 2 1
Pyrococcus_furiosus_COM1 2 1
Thermoplasmatales_archaeon_BRNA1 5 3
Thermoplasma_volcanium_GSS1 2 1
Thermoplasma_acidophilum_DSM_1728 2 1
Picrophilus_torridus_DSM_9790 2 1
Salinarchaeum_sp._Harcht-Bsk1 3 2
Halopiger_xanaduensis_SH-6 3 2
Haloterrigena_turkmenica_DSM_5511 3 2
Natrinema_sp._J7-2 3 2
Natrialba_magadii_ATCC_43099 3 2
Halorubrum_lacusprofundi_ATCC_49239 10 6
Haloquadratum_walsbyi_DSM_16790 5 3
Halogeometricum_borinquense_DSM_11551 7 4
Haloferax_mediterranei_ATCC_33500 9 5
Haloferax_volcanii_DS2 9 5
Halomicrobium_mukohataei_DSM_12286 3 2
Halorhabdus_utahensis_DSM_12940 5 3
Natronomonas_pharaonis_DSM_2160 3 2
Haloarcula_hispanica_ATCC_33960 3 2
Haloarcula_marismortui_ATCC_43049 3 2
Halalkalicoccus_jeotgali_B3 3 2
Halobacterium_salinarum_R1 12 7
Halobacterium_sp._NRC-1 21 12
Methanotorris_igneus_Kol_5 2 1
Methanocaldococcus_sp._FS406-22 2 1
Methanocaldococcus_fervens_AG86 2 1
Methanocaldococcus_vulcanius_M7 2 1
methanocaldococcus_infernus_ME 2 1
Methanocaldococcus_jannaschii_DSM_2661 2 1
Methanothermococcus_okinawensis_IH1 2 1
Methanococcus_aeolicus_Nankai-3 2 1
Methanococcus_maripaludis_C5 4 2
Methanococcus_voltae_A3 2 1
Methanococcus_vannielii_SB 2 1
Methanothermus_fervidus_DSM_2088 3 2
Methanothermobacter_marburgensis_str._Marburg 2 1
Methanothermobacter_thermautotrophicus_str._Delta_H 2 1
Methanosphaera_stadtmanae_DSM_3091 3 2
Methanobrevibacter_sp._AbM4 2 1
Methanobrevibacter_ruminantium_M1 2 1
Methanobrevibacter_smithii_ATCC_35061 2 1
Complete_genome_sequence_of_Methanobacterium_sp._Mb1 3 2
Aciduliprofundum_sp._MAR08-339 2 1
Aciduliprofundum_boonei_T469 2 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   27 14
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   13 7
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   10 6
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   5 4
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   6 3
Cryptococcus_neoformans_var._grubii_H99_ 3 2
Cryptococcus_neoformans_B-3501A_ 3 2
Cryptococcus_neoformans_JEC21_ 1 1
Paracoccidioides_brasiliensis_Pb01_ 3 2
Paracoccidioides_brasiliensis_Pb03_ 3 2
Coccidioides_posadasii_str._Silveira_ 3 2
Coccidioides_immitis_RMSCC_3703_ 3 2
Coccidioides_immitis_RMSCC_2394_ 3 2
Coccidioides_immitis_H538.4_ 2 2
Ajellomyces_dermatitidis_ER-3_ 3 2
Histoplasma_capsulatum_H143 3 2
Histoplasma_capsulatum_H88 3 2
Histoplasma_capsulatum_G186AR 3 2
Aspergillus_fumigatus_A1163_ 3 2
Candida_albicans_WO-1_ 3 2
Saccharomyces_cerevisiae_UC5 3 2
Saccharomyces_cerevisiae_PW5 3 2
Saccharomyces_cerevisiae_FL100 3 2
Saccharomyces_cerevisiae_CLIB324 2 1
Saccharomyces_cerevisiae_CBS7960 3 2
Saccharomyces_cerevisiae_YJM269 3 2
Saccharomyces_cerevisiae_T7 3 2
Saccharomyces_cerevisiae_FostersB 3 2
Saccharomyces_cerevisiae_FostersO 2 1
Saccharomyces_cerevisiae_VL3 3 2
Saccharomyces_cerevisiae_Vin13 3 2
Saccharomyces_cerevisiae_LalvinQA23 3 2
Saccharomyces_cerevisiae_AWRI796 3 2
Saccharomyces_cerevisiae_Sigma1278b 3 2
Saccharomyces_cerevisiae_W303 3 2
Saccharomyces_cerevisiae_JAY291 3 2
Saccharomyces_cerevisiae_AWRI1631 2 1
Saccharomyces_cerevisiae_YPS163 1 1
Saccharomyces_cerevisiae_M22 1 1
Saccharomyces_cerevisiae_T73 2 1
Saccharomyces_cerevisiae_CLIB215 3 2
Saccharomyces_cerevisiae_Y10 3 2
Saccharomyces_cerevisiae_YJM789_ 3 2
Saccharomyces_cerevisiae_YJM789 3 2
Saccharomyces_cerevisiae_RM11-1a 3 2
Saccharomyces_cerevisiae_RM11-1a_ 3 2
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   3 2
Schizosaccharomyces_pombe_972h-_ 2 1
Batrachochytrium_dendrobatidis_JEL423_ 2 1
Batrachochytrium_dendrobatidis_JAM81_ 3 2
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   10 6
Hordeum_vulgare_22   (Domesticated barley)   16 8
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   7 4
Trypanosoma_brucei_Lister_427_v4.1 3 2
Neospora_caninum_Nc-Liverpool_6.2 6 3
Plasmodium_falciparum_HB3_ 5 3
Plasmodium_falciparum_Dd2_ 5 3
Gordonibacter_pamelaeae_7-10-1-b 1 1
Frankia_sp._EuI1c 1 1
Nocardiopsis_alba_ATCC_BAA-2165 1 1
Streptomyces_albus_J1074 1 1
Streptomyces_rapamycinicus_NRRL_5491 2 2
Streptomyces_davawensis_JCM_4913 2 2
Streptomyces_fulvissimus_DSM_40593 2 2
Streptomyces_venezuelae_ATCC_10712 2 2
Streptomyces_collinus_Tu_365 2 2
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 2 2
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 2 2
Saccharothrix_espanaensis_DSM_44229 3 3
Amycolatopsis_mediterranei_RB 2 2
Amycolatopsis_mediterranei_S699 2 2
Amycolatopsis_mediterranei_S699 2 2
Amycolatopsis_orientalis_HCCB10007 2 2
Actinoplanes_friuliensis_DSM_7358 1 1
Rhodococcus_pyridinivorans_SB3094 1 1
Rhodococcus_erythropolis_CCM2595 1 1
Nocardia_brasiliensis_ATCC_700358 1 1
Mycobacterium_sp._MOTT36Y 1 1
Mycobacterium_sp._JDM601 1 1
Mycobacterium_abscessus_subsp._bolletii_50594 1 1
Mycobacterium_liflandii_128FXT 1 1
Mycobacterium_sp._KMS 1 1
Mycobacterium_sp._MCS 1 1
Mycobacterium_yongonense_05-1390 1 1
Mycobacterium_intracellulare_MOTT-64 1 1
Mycobacterium_indicus_pranii_MTCC_9506 1 1
Mycobacterium_intracellulare_MOTT-02 1 1
Mycobacterium_avium_subsp._paratuberculosis_MAP4 1 1
Mycobacterium_avium_subsp._paratuberculosis_K-10 1 1
Mycobacterium_canettii_CIPT_140070017 1 1
Mycobacterium_canettii_CIPT_140060008 1 1
Mycobacterium_canettii_CIPT_140070010 1 1
Mycobacterium_tuberculosis_EAI5/NITR206 1 1
Mycobacterium_tuberculosis_EAI5 1 1
Mycobacterium_tuberculosis_str._Beijing/NITR203 1 1
Mycobacterium_tuberculosis_UT205 1 1
Mycobacterium_tuberculosis_RGTB423 1 1
Mycobacterium_tuberculosis_RGTB327 1 1
Mycobacterium_tuberculosis_CTRI-2 1 1
Mycobacterium_tuberculosis_str._Erdman_=_ATCC_35801 1 1
Mycobacterium_tuberculosis_KZN_605 1 1
Mycobacterium_tuberculosis_KZN_4207 1 1
Mycobacterium_tuberculosis_CCDC5180 1 1
Mycobacterium_tuberculosis_CCDC5079 1 1
Mycobacterium_tuberculosis_CCDC5079 1 1
Mycobacterium_tuberculosis_H37Ra 1 1
Mycobacterium_tuberculosis_str._Haarlem 1 1
Mycobacterium_tuberculosis_F11 1 1
Mycobacterium_tuberculosis_H37Rv 1 1
Mycobacterium_tuberculosis_CDC1551 1 1
Mycobacterium_bovis_AF2122/97 1 1
Mycobacterium_bovis_BCG_str._Korea_1168P 1 1
Mycobacterium_bovis_BCG_str._Mexico 1 1
Mycobacterium_bovis_BCG_str._Tokyo_172 1 1
Mycobacterium_gilvum_Spyr1 1 1
Mycobacterium_smegmatis_str._MC2_155 1 1
Mycobacterium_kansasii_ATCC_12478 1 1
Clavibacter_michiganensis_subsp._sepedonicus 1 1
Clavibacter_michiganensis_subsp._nebraskensis_NCPPB_2581 1 1
Chthonomonas_calidirosea_T49 1 1
Eubacterium_siraeum_V10Sc8a 1 1
Clostridium_thermocellum_DSM_1313 1 1
[Clostridium]_stercorarium_Clostridiu_subsp._stercorarium_DSM_8532 1 1
Faecalibacterium_prausnitzii_L2-6 1 1
Clostridium_acidurici_9a 1 1
Clostridium_difficile_BI1 1 1
Clostridium_difficile_R20291 1 1
Clostridium_difficile_CD196 1 1
Clostridium_saccharolyticum_Clostridium_cf._saccharolyticum_K10 1 1
Coprococcus_catus_GD/7 1 1
Candidatus_Arthromitus_sp._SFB-rat-Yit 1 1
Candidatus_Arthromitus_sp._SFB-mouse-Yit 1 1
Clostridium_saccharobutylicum_DSM_13864 1 1
Clostridium_autoethanogenum_DSM_10061 1 1
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 1 1
Clostridium_kluyveri_NBRC_12016 1 1
Clostridium_tetani_genome_12124569 1 1
Clostridium_perfringens_SM101 1 1
Clostridium_perfringens_str._13 1 1
Clostridium_pasteurianum_BC1 1 1
Clostridium_botulinum_H04402_065 1 1
Clostridium_botulinum_BKT015925 1 1
Clostridium_botulinum_F_str._230613 1 1
Clostridium_botulinum_F_str._Langeland 1 1
Clostridium_botulinum_E3_str._Alaska_E43 1 1
Clostridium_botulinum_B1_str._Okra 1 1
Clostridium_botulinum_Ba4_str._657 1 1
Clostridium_botulinum_A2_str._Kyoto 1 1
Clostridium_botulinum_A3_str._Loch_Maree 1 1
Clostridium_botulinum_A_str._Hall 1 1
Clostridium_botulinum_A_str._ATCC_19397 1 1
Clostridium_acetobutylicum_DSM_1731 1 1
Clostridium_acetobutylicum_EA_2018 1 1
Thermoanaerobacterium_saccharolyticum_JW/SL-YS485 1 1
Thermoanaerobacterium_thermosaccharolyticum_M0795 1 1
Thermoanaerobacter_sp._X513 1 1
Carnobacterium_maltaromaticum_LMA28 1 1
Bacillus_subtilis_PY79 1 1
Bacillus_subtilis_QB928 1 1
Bacillus_subtilis_BSn5 1 1
Bacillus_subtilis_subsp._subtilis_str._BSP1 1 1
Bacillus_subtilis_subsp._subtilis_6051-HGW 1 1
Bacillus_subtilis_subsp._natto_BEST195 1 1
Chlorobium_phaeobacteroides_BS1 1 1
Singulisphaera_acidiphila_DSM_18658 1 1
Leptospirillum_ferriphilum_ML-04 1 1
Acidithiobacillus_ferrooxidans_ATCC_23270 1 1
Bdellovibrio_exovorus_JSS 1 1
Bdellovibrio_bacteriovorus_str._Tiberius 1 1
Sorangium_cellulosum_So0157-2 1 1
Anaeromyxobacter_sp._K 1 1
Anaeromyxobacter_dehalogenans_2CP-C 1 1
Myxococcus_stipitatus_DSM_14675 2 2
Burkholderia_phenoliruptrix_BR3459a 1 1
Pandoraea_pnomenusa_3kgm 1 1
Ralstonia_pickettii_12J 1 1
Ralstonia_solanacearum_FQY_4 1 1
Ralstonia_solanacearum_Po82 1 1
Ralstonia_solanacearum_PSI07 1 1
Ralstonia_solanacearum_CMR15 1 1
Ralstonia_solanacearum_GMI1000 1 1
Burkholderia_sp._YI23 1 1
Burkholderia_sp._CCGE1003 1 1
Burkholderia_sp._CCGE1001 1 1
Burkholderia_sp._KJ006 1 1
Burkholderia_thailandensis_MSMB121 1 1
Burkholderia_pseudomallei_MSHR305 1 1
Burkholderia_pseudomallei_NCTC_13179 1 1
Burkholderia_pseudomallei_BPC006 1 1
Burkholderia_pseudomallei_1026b 1 1
Burkholderia_pseudomallei_MSHR346 1 1
Burkholderia_pseudomallei_668 1 1
Burkholderia_pseudomallei_1710b 1 1
Burkholderia_pseudomallei_K96243 1 1
Burkholderia_mallei_NCTC_10229 1 1
Burkholderia_mallei_NCTC_10247 2 2
Burkholderia_mallei_ATCC_23344 1 1
Burkholderia_lata 2 2
Burkholderia_ambifaria_MC40-6 2 2
Burkholderia_cenocepacia_MC0-3 2 2
Burkholderia_cenocepacia_AU_1054 1 1
Burkholderia_cenocepacia_J2315 2 2
Burkholderia_multivorans_ATCC_17616 2 2
Burkholderia_cepacia_GG4 2 2
Alicycliphilus_denitrificans_BC 1 1
Variovorax_paradoxus_B4 1 1
Variovorax_paradoxus_EPS 1 1
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 1 1
Rhodospirillum_rubrum_ATCC_11170 1 1
Methylobacterium_extorquens_DM4 1 1
Methylobacterium_extorquens_PA1 1 1
Simiduia_agarivorans_SA1_=_DSM_21679 1 1
Aeromonas_hydrophila_ML09-119 1 1
Vibrio_sp._EJY3 1 1
Vibrio_parahaemolyticus_BB22OP 1 1
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 1 1
Vibrio_anguillarum_Listonella_anguillarum_M3 1 1
Vibrio_nigripulchritudo_VibrioScope 1 1
Vibrio_vulnificus_CMCP6 1 1
Vibrio_vulnificus_YJ016 1 1
Vibrio_cholerae_LMA3984-4 1 1
Vibrio_cholerae_M66-2 1 1
Vibrio_cholerae_O395 1 1
Vibrio_cholerae_IEC224 1 1
Vibrio_cholerae_O1_str._2010EL-1786 1 1
Vibrio_cholerae_MJ-1236 1 1
Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 1 1
Shewanella_sp._W3-18-1 1 1
Shewanella_sp._ANA-3 1 1
Shewanella_baltica_BA175 1 1
Shewanella_baltica_OS678 1 1
Shewanella_baltica_OS117 1 1
Shewanella_baltica_OS223 1 1
Shewanella_baltica_OS195 1 1
Shewanella_baltica_OS155 1 1
Shewanella_sp._MR-7 1 1
Shewanella_putrefaciens_200 1 1
Glaciecola_psychrophila_170 1 1
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 1 1
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 1 1
Alteromonas_macleodii_str._'Ionian_Sea_U8' 1 1
Alteromonas_macleodii_str._'Ionian_Sea_U7' 1 1
Alteromonas_macleodii_str._'Ionian_Sea_U4' 1 1
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 1 1
Alteromonas_macleodii_AltDE1 1 1
Alteromonas_macleodii_str._'English_Channel_673' 1 1
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 1 1
Alteromonas_macleodii_str._'Black_Sea_11' 1 1
Alcanivorax_dieselolei_B5 1 1
Stenotrophomonas_maltophilia_D457 1 1
Stenotrophomonas_maltophilia_JV3 1 1
Stenotrophomonas_maltophilia_R551-3 1 1
Xanthomonas_citri_subsp._citri_Aw12879 1 1
Xanthomonas_campestris_pv._vesicatoria_str._85-10 1 1
Xanthomonas_axonopodis_pv._citrumelo_F1 1 1
Xanthomonas_oryzae_pv._oryzicola_BLS256 1 1
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 1 1
Xanthomonas_oryzae_pv._oryzae_KACC_10331 1 1
Xanthomonas_campestris_pv._raphani_756C 1 1
Xanthomonas_campestris_pv._campestris_str._8004 1 1
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 1 1
Rahnella_aquatilis_HX2 1 1
Serratia_sp._AS13 1 1
Serratia_plymuthica_S13 1 1
Serratia_plymuthica_4Rx13 1 1
Serratia_marcescens_FGI94 1 1
Serratia_marcescens_WW4 1 1
Serratia_liquefaciens_ATCC_27592 1 1
Dickeya_dadantii_3937 1 1
Pantoea_ananatis_LMG_5342 1 1
Pantoea_ananatis_PA13 1 1
Pantoea_ananatis_AJ13355 1 1
Erwinia_amylovora_CFBP1430 1 1
Cronobacter_sakazakii_CMCC_45402 1 1
Cronobacter_sakazakii_SP291 1 1
Cronobacter_sakazakii_ATCC_BAA-894 1 1
Raoultella_ornithinolytica_B6 1 1
Shigella_sonnei_53G 1 1
Shigella_flexneri_2a_str._2457T 1 1
Shigella_flexneri_2a_str._301 1 1
Shigella_dysenteriae_1617 1 1
Shigella_boydii_Sb227 1 1
Salmonella_bongori_N268-08 1 1
Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 1 1
Salmonella_enterica_subsp._enterica_serovar_4,[5],12:i:-_str._08-1736 1 1
Salmonella_enterica_subsp._enterica_serovar_Javiana_str._CFSAN001992 1 1
Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 1 1
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 1 1
Salmonella_enterica_subsp._enterica_serovar_Enteritidis_str._P125109 1 1
Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 1 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._USMARC-S3124.1 1 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL254 1 1
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_var._5-_str._CFSAN001921 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 1 1
Salmonella_enterica_The_genome_of__subsp._enterica_serovar_Typhimurium_str._DT2 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._P-stx-12 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty21a 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2 1 1
Salmonella_enterica_serovar_Bovismorbificans_genomics 1 1
Salmonella_enterica_subsp._enterica_serovar_Bareilly_str._CFSAN000189 1 1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._24249 1 1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._SL483 1 1
Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._2007-60-3289-1 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_B_str._SPB7 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._AKU_12601 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._ATCC_9150 1 1
Salmonella_enterica_subsp._enterica_Serovar_Heidelberg_str._CFSAN002069 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._B182 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._SL476 1 1
Salmonella_enterica_subsp._enterica_serovar_Pullorum_str._S06004 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._CDC1983-67 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._RKS5078 1 1
Salmonella_enterica_subsp._enterica_serovar_Thompson_str._RM6836 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum_str._287/91 1 1
Klebsiella_oxytoca_KCTC_1686 1 1
Klebsiella_pneumoniae_JM45 1 1
Klebsiella_pneumoniae_CG43 1 1
Klebsiella_pneumoniae_KCTC_2242 1 1
Klebsiella_pneumoniae_342 1 1
Klebsiella_pneumoniae_subsp._pneumoniae_1084 1 1
Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 1 1
Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 1 1
Klebsiella_pneumoniae_subsp._rhinoscleromatis_SB3432 1 1
Enterobacter_aerogenes_EA1509E 1 1
Escherichia_coli_E24377A 1 1
Escherichia_coli_E._coli_PMV-1 1 1
Escherichia_coli_JJ1886 1 1
Escherichia_coli_LY180 1 1
Escherichia_coli_APEC_O78 1 1
Escherichia_coli_O7:K1_str._CE10 1 1
Escherichia_coli_O104:H4_str._2009EL-2050 1 1
Escherichia_coli_O104:H4_str._2009EL-2071 1 1
Escherichia_coli_O104:H4_str._2011C-3493 1 1
Escherichia_coli_NA114 1 1
Escherichia_coli_P12b 1 1
Escherichia_coli_str._'clone_D_i2' 1 1
Escherichia_coli_str._'clone_D_i14' 1 1
Escherichia_coli_UM146 1 1
Escherichia_coli_042 1 1
Escherichia_coli_Xuzhou21 1 1
Escherichia_coli_IHE3034 1 1
Escherichia_coli_UMNK88 1 1
Escherichia_coli_O83:H1_str._NRG_857C 1 1
Escherichia_coli_ABU_83972 1 1
Escherichia_coli_KO11FL 1 1
Escherichia_coli_KO11FL 1 1
Escherichia_coli_LF82 1 1
Escherichia_coli_ED1a 1 1
Escherichia_coli_IAI39 1 1
Escherichia_coli_UMN026 1 1
Escherichia_coli_55989 1 1
Escherichia_coli_S88 1 1
Escherichia_coli_IAI1 1 1
Escherichia_coli_W 1 1
Escherichia_coli_W 1 1
Escherichia_coli_DH1 1 1
Escherichia_coli_DH1 1 1
Escherichia_coli_ATCC_8739 1 1
Escherichia_coli_BL21(DE3) 1 1
Escherichia_coli_BL21(DE3) 1 1
Escherichia_coli_SMS-3-5 1 1
Escherichia_coli_SE15 1 1
Escherichia_coli_SE11 1 1
Escherichia_coli_APEC_O1 1 1
Escherichia_coli_O103:H2_str._12009 1 1
Escherichia_coli_UTI89 1 1
Escherichia_coli_536 1 1
Escherichia_coli_HS 1 1
Escherichia_coli_ETEC_H10407 1 1
Escherichia_coli_O55:H7_str._RM12579 1 1
Escherichia_coli_O55:H7_str._CB9615 1 1
Escherichia_coli_O26:H11_str._11368 1 1
Escherichia_coli_CFT073 1 1
Escherichia_coli_O111:H-_str._11128 1 1
Escherichia_coli_O127:H6_str._E2348/69 1 1
Escherichia_coli_O157:H7_str._TW14359 1 1
Escherichia_coli_O157:H7_str._EC4115 1 1
Escherichia_coli_O157:H7_str._Sakai 1 1
Escherichia_coli_O157:H7_str._EDL933 1 1
Escherichia_coli_str._K-12_substr._MDS42 1 1
Escherichia_coli_BW2952 1 1
Escherichia_coli_str._K-12_substr._MG1655 1 1
Escherichia_coli_str._K-12_substr._W3110 1 1
Escherichia_coli_str._K-12_substr._DH10B 1 1
Escherichia_coli_B_str._REL606 1 1
Enterobacter_cloacae_SCF1 1 1
Enterobacter_cloacae_EcWSU1 1 1
Enterobacter_cloacae_subsp._cloacae_ENHKU01 1 1
Enterobacter_cloacae_subsp._cloacae_NCTC_9394 1 1
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 1 1
Pseudomonas_denitrificans_ATCC_13867 1 1
Pseudomonas_stutzeri_CCUG_29243 1 1
Pseudomonas_stutzeri_DSM_10701 1 1
Pseudomonas_stutzeri_DSM_4166 1 1
Pseudomonas_stutzeri_RCH2 1 1
Pseudomonas_stutzeri_ATCC_17588_=_LMG_11199 1 1
Pseudomonas_monteilii_SB3101 1 1
Pseudomonas_monteilii_SB3078 1 1
Pseudomonas_putida_HB3267 1 1
Pseudomonas_putida_NBRC_14164 1 1
Pseudomonas_putida_S16 1 1
Pseudomonas_putida_GB-1 1 1
Pseudomonas_protegens_CHA0 1 1
Pseudomonas_fluorescens_A506 1 1
Pseudomonas_fluorescens_R124 1 1
Pseudomonas_resinovorans_NBRC_106553 1 1
Pseudomonas_mendocina_NK-01 1 1
Pseudomonas_aeruginosa_SCV20265 1 1
Pseudomonas_aeruginosa_MTB-1 1 1
Pseudomonas_aeruginosa_LES431 1 1
Pseudomonas_aeruginosa_RP73 1 1
Pseudomonas_aeruginosa_B136-33 1 1
Pseudomonas_aeruginosa_PA1R 1 1
Pseudomonas_aeruginosa_PA1 1 1
Pseudomonas_aeruginosa_DK2 1 1
Pseudomonas_aeruginosa_NCGM2.S1 1 1
Pseudomonas_aeruginosa_M18 1 1
Pseudomonas_aeruginosa_LESB58 1 1
Pseudomonas_aeruginosa_PA7 1 1
Pseudomonas_aeruginosa_PAO1 1 1
Candidatus_Nitrososphaera_gargensis_Ga9.2 3 2
Candidatus_Nitrosoarchaeum_koreensis_Candidatus_Nitrosopumilus_koreensis_AR1 7 4
Caldisphaera_lagunensis_DSM_15908 2 1
Aeropyrum_camini_SY1_=_JCM_12091 2 1
Sulfolobus_islandicus_LAL14/1 2 1
Sulfolobus_islandicus_REY15A 2 1
Sulfolobus_islandicus_HVE10/4 2 1
Sulfolobus_islandicus_Y.G.57.14 2 1
Sulfolobus_islandicus_L.S.2.15 2 1
Sulfolobus_islandicus_M.16.27 2 1
Sulfolobus_islandicus_M.14.25 2 1
Sulfolobus_islandicus_M.16.4 2 1
Sulfolobus_islandicus_L.D.8.5 2 1
Sulfolobus_solfataricus_98/2 2 1
Sulfolobus_acidocaldarius_SUSAZ 2 1
Sulfolobus_acidocaldarius_Ron12/I 2 1
Sulfolobus_acidocaldarius_N8 2 1
Methanomethylovorans_hollandica_DSM_15978 3 2
Methanolobus_psychrophilus_R15 5 3
Methanosarcina_mazei_Tuc01 5 3
Methanoregula_formicica_Methanoregula_formicicum_SMSP 7 4
Archaeoglobus_sulfaticallidus_PM70-1 2 1
Thermococcus_sp._AM4 4 2
Thermococcus_sp._CL1 2 1
Thermococcus_litoralis_DSM_5473 3 2
Pyrococcus_sp._NA2 2 1
Pyrococcus_furiosus_DSM_3638 2 1
Candidatus_Methanomethylophilus_alvus_Mx1201 3 2
Candidatus_Methanomassiliicoccus_intestinalis_Issoire-Mx1 3 2
Ferroplasma_acidarmanus_fer1 2 1
Halovivax_ruber_XH-70 3 2
Natrinema_pellirubrum_DSM_15624 9 5
Natronococcus_occultus_SP4 7 4
Natronobacterium_gregoryi_SP2 7 4
Haloquadratum_walsbyi_C23 11 6
Halorhabdus_tiamatea_SARL4B 5 3
Natronomonas_moolapensis_8.8.11 9 5
Haloarcula_hispanica_N601 3 2
Methanococcus_maripaludis_X1 2 1
Methanococcus_maripaludis_C6 2 1
Methanococcus_maripaludis_C7 2 1
Methanococcus_maripaludis_S2 2 1
Methanobacterium_sp._SWAN-1 2 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   7 4
Pan_troglodytes_69_2.1.4   (Chimpanzee)   7 4
Gorilla_gorilla_69_3.1   (Western gorilla)   7 4
Pongo_abelii_69_2   (Sumatran orangutan)   7 4
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   7 4
Macaca_mulatta_69_1   (Rhesus monkey)   6 4
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   7 4
Otolemur_garnettii_69_3   (Small-eared galago)   7 4
Microcebus_murinus_69_1   (Gray mouse lemur)   7 4
Rattus_norvegicus_69_3.4   (Norway rat)   7 4
Mus_musculus_69_38   (House mouse)   7 4
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   6 4
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   7 4
Cavia_porcellus_69_3   (Domestic guinea pig)   7 4
Oryctolagus_cuniculus_69_2   (Rabbit)   7 4
Ochotona_princeps_69   (American pika)   7 4
Tupaia_belangeri_69   (Northern tree shrew)   6 4
Sus_scrofa_69_10.2   (Pig)   9 5
Bos_taurus_69_3.1   (Cattle)   9 5
Vicugna_pacos_69_1   (Alpaca)   7 4
Tursiops_truncatus_69_1   (Bottlenose dolphin)   7 4
Mustela_putorius_furo_69_1.0   (Domestic ferret)   7 4
Ailuropoda_melanoleuca_69_1   (Giant panda)   6 4
Canis_familiaris_69_3.1   (Dog)   11 6
Felis_catus_69   (Domestic cat)   4 3
Equus_caballus_69_2   (Horse)   7 4
Myotis_lucifugus_69_2.0   (Little brown bat)   7 4
Pteropus_vampyrus_69_1   (Large flying fox)   7 4
Sorex_araneus_69_1   (European shrew)   8 5
Erinaceus_europaeus_69   (Western European hedgehog)   5 3
Procavia_capensis_69_1   (Cape rock hyrax)   7 4
Loxodonta_africana_69_3   (African savanna elephant)   7 4
Echinops_telfairi_69   (Small Madagascar hedgehog)   3 3
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   4 2
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   5 3
Macropus_eugenii_69_1.0   (Tammar wallaby)   5 3
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   6 4
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   7 4
Ornithorhynchus_anatinus_69_5   (Platypus)   7 4
Petromyzon_marinus_69_7.0   (Sea lamprey)   4 2
Meleagris_gallopavo_69_2   (Turkey)   7 4
Gallus_gallus_69_2   (Chicken)   7 4
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   7 4
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   7 4
Anolis_carolinensis_69_2.0   (Green anole)   6 4
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   7 4
Latimeria_chalumnae_69_1   (Coelacanth)   5 3
Gadus_morhua_69_1   (Atlantic cod)   7 4
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   11 6
Takifugu_rubripes_69_4   (Torafugu)   7 4
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   9 5
Oryzias_latipes_69_1   (Japanese medaka)   5 3
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   7 4
Oreochromis_niloticus_69_1.0   (Nile tilapia)   9 5
Danio_rerio_69_9   (Zebrafish)   7 4
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   5 3
Ciona_intestinalis_69   (Vase tunicate)   5 3
Drosophila_melanogaster_69_5   (Fruit fly)   11 6
Caenorhabditis_elegans_69_215   (Roundworm)   4 2
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   3 2
Arabidopsis_thaliana_10   (Thale cress)   5 3

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   29 23
Homo_sapiens__(NCBI_version)   (Human)   16 12
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   7 4
Heliconius_numata__(Incomplete) 6 4
Loa_loa_v3.3_(Request)   (Eye worm)   5 3
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   5 3
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   5 3
Moniliophthora_perniciosa_FA553__(Genome_survey) 1 1
Encephalitozoon_intestinalis__(endoparasite) 3 2
Encephalitozoon_cuniculi_(endoparasite) 3 2
Lotus_japonicus__(Early_assembly) 9 6
Malus_x_domestica_(Duplicate)   (Apple)   13 7
Ricinus_communis__(Early_assembly)   (Castor bean)   7 4
Nicotiana_benthamiana_0.4.4_(Early_draft) 8 5
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   3 2
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   3 2
Phoenix_dactylifera__(Early_draft)   (Date palm)   6 3
Guillardia_theta_(nucleomorph) 2 1
Mycobacterium_tuberculosis_H37Rv_(Duplicate_of_ex) 1 1
NCBI_plasmid_sequences_(Plasmids) 48 27
UniProt__viral_sequences_(Viral) 10 9
PDB_chains_(SCOP_1.75)_(PDB) 43 30
NCBI_viral_sequences_(Viral) 24 21
TargetDB__(Targets) 44 38
Protozoadb_2010_08_(Protozoadb) 156 94
Protein_Data_Bank_(all_PDB_sequenc) 275 176
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 643 643
STRING_v9.0.5_(STRING) 1184 826
Uniprot_2018_03_genome 19025 14243
NCBI_2017_08_genome 52194 48359

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.