SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for Serpins superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Serpins domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   185 182
Pan_troglodytes_76_2.1.4   (Chimpanzee)   34 34
Gorilla_gorilla_76_3.1   (Western gorilla)   40 40
Pongo_abelii_76_2   (Sumatran orangutan)   39 38
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   37 36
Papio_anubis_76   (Olive baboon)   40 40
Macaca_mulatta_76_1   (Rhesus monkey)   62 60
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   81 81
Otolemur_garnettii_76_3   (Small-eared galago)   38 38
Microcebus_murinus_76_1   (Gray mouse lemur)   39 36
Rattus_norvegicus_76_5.0   (Norway rat)   57 54
Mus_musculus_76_38   (House mouse)   129 129
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   52 37
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   46 46
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   35 34
Cavia_porcellus_76_3   (Domestic guinea pig)   48 48
Oryctolagus_cuniculus_76_2   (Rabbit)   39 39
Ochotona_princeps_76   (American pika)   45 35
Tupaia_belangeri_76   (Northern tree shrew)   38 29
Sus_scrofa_76_10.2   (Pig)   45 44
Bos_taurus_76_3.1   (Cattle)   49 49
Ovis_aries_76_3.1   (Sheep)   54 54
Vicugna_pacos_76_1   (Alpaca)   41 32
Tursiops_truncatus_76_1   (Bottlenose dolphin)   30 29
Mustela_putorius_furo_76_1.0   (Domestic ferret)   34 34
Ailuropoda_melanoleuca_76_1   (Giant panda)   36 36
Canis_familiaris_76_3.1   (Dog)   40 40
Felis_catus_76_6.2   (Domestic cat)   35 35
Equus_caballus_76_2   (Horse)   44 44
Myotis_lucifugus_76_2.0   (Little brown bat)   44 44
Pteropus_vampyrus_76_1   (Large flying fox)   37 32
Sorex_araneus_76_1   (European shrew)   37 31
Erinaceus_europaeus_76   (Western European hedgehog)   29 26
Procavia_capensis_76_1   (Cape rock hyrax)   37 31
Loxodonta_africana_76_3   (African savanna elephant)   35 35
Echinops_telfairi_76   (Small Madagascar hedgehog)   41 29
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   35 33
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   29 21
Macropus_eugenii_76_1.0   (Tammar wallaby)   37 27
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   42 42
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   35 35
Ornithorhynchus_anatinus_76_5   (Platypus)   37 37
Saccoglossus_kowalevskii_v3.0 7 7
Petromyzon_marinus_76_7.0   (Sea lamprey)   10 10
Meleagris_gallopavo_76_2   (Turkey)   30 30
Gallus_gallus_76_4   (Chicken)   28 28
Anas_platyrhynchos_76_1.0   (Mallard)   26 26
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   30 29
Ficedula_albicollis_76_1.0   (Collared flycatcher)   29 29
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   29 29
Anolis_carolinensis_76_2.0   (Green anole)   31 31
Xenopus_laevis_   (African clawed frog)   59 59
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   29 29
Latimeria_chalumnae_76_1   (Coelacanth)   28 27
Lepisosteus_oculatus_76   (Spotted gar)   22 22
Gadus_morhua_76_1   (Atlantic cod)   31 30
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   25 25
Takifugu_rubripes_76_4   (Torafugu)   77 76
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   40 40
Oryzias_latipes_76_1   (Japanese medaka)   32 32
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   21 21
Poecilia_formosa_76   (Amazon molly)   24 22
Oreochromis_niloticus_76_1.0   (Nile tilapia)   32 32
Astyanax_mexicanus_76   (Mexican tetra)   26 26
Danio_rerio_76_9   (Zebrafish)   51 51
Oikopleura_dioica 11 11
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   5 5
Ciona_intestinalis_76   (Vase tunicate)   10 10
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   14 13
Adineta_vaga 16 16
Octopus_bimaculoides_280 9 9
Crassostrea_gigas_22   (Pacific oyster)   9 9
Lottia_gigantea_   (Owl limpet)   8 8
Helobdella_robusta_ 16 16
Capitella_sp._I_ 5 5
Danaus_plexippus_OGS1.0   (Monarch butterfly)   30 29
Heliconius_melpomene_   (Postman butterfly)   28 23
Bombyx_mori_   (Domestic silkworm)   44 39
Nasonia_vitripennis_   (Jewel wasp)   10 8
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   15 15
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   10 8
Linepithema_humile_v1.1   (Argentine ant)   11 9
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   10 8
Solenopsis_invicta_v.2.2.3   (Red fire ant)   9 8
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   10 8
Atta_cephalotes_v1.1 11 9
Camponotus_floridanus_v3.3   (Florida carpenter ant)   13 11
Lucilia_cuprina   (Australian sheep blowfly)   26 22
Drosophila_grimshawi_1.3 19 19
Drosophila_willistoni_1.3 24 24
Drosophila_pseudoobscura_2.13 29 28
Drosophila_persimilis_1.3 28 26
Drosophila_suzukii 53 36
Drosophila_yakuba_1.3 33 33
Drosophila_simulans_1.3 34 33
Drosophila_sechellia_1.3 40 39
Drosophila_melanogaster_76_5   (Fruit fly)   50 50
Drosophila_erecta_1.3 26 26
Drosophila_ananassae_1.3 31 31
Drosophila_virilis_1.2 19 19
Drosophila_mojavensis_1.3 21 21
Megaselia_scalaris_22 18 14
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   41 39
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   58 53
Anopheles_darlingi_22   (American malaria mosquito)   21 15
Anopheles_gambiae_49_3j   (African malaria mosquito)   26 24
Tribolium_castaneum_3.0   (Red flour beetle)   36 33
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   16 15
Acyrthosiphon_pisum_   (Pea aphid)   18 16
Rhodnius_prolixus_22 7 7
Daphnia_pulex_   (Common water flea)   6 6
Strigamia_maritima_22 20 11
Sarcoptes_scabiei 11 10
Tetranychus_urticae_   (Two-spotted spider mite)   22 22
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   47 44
Pristionchus_pacificus_ 20 20
Meloidogyne_incognita_   (Southern root-knot nematode)   8 5
Meloidogyne_hapla_ 1 1
Onchocerca_volvulus_22 7 7
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   26 26
Caenorhabditis_japonica_ 15 13
Caenorhabditis_brenneri_ 25 25
Caenorhabditis_remanei_ 32 31
Caenorhabditis_elegans_76_235   (Roundworm)   22 22
Caenorhabditis_briggsae_2 15 14
Trichinella_spiralis_22 3 3
Hymenolepis_microstoma_ 11 11
Echinococcus_multilocularis_ 4 4
Echinococcus_granulosus_ 6 6
Taenia_solium_   (Pork tapeworm)   4 4
Schistosoma_mansoni_ 8 8
Mnemiopsis_leidyi   (Sea walnut)   9 9
Thelohanellus_kitauei 186 186
Acropora_digitifera_v1.0 3 3
Nematostella_vectensis_1.0   (Starlet sea anemone)   4 4
Hydra_vulgaris 1 1
Trichoplax_adhaerens_ 3 3
Conidiobolus_coronatus_NRRL28638_v1.0 1 1
Phycomyces_blakesleeanus_ 1 1
Pisolithus_microcarpus_441_v1.0 1 1
Laccaria_bicolor_S238N-H82_ 1 1
Fusarium_verticillioides_7600_ 1 1
Paracoccidioides_brasiliensis_Pb18_ 1 1
Ajellomyces_dermatitidis_SLH14081_ 1 1
Microsporum_canis_CBS_113480_ 1 1
Trichophyton_equinum_CBS_127.97_ 1 1
Trichophyton_verrucosum_HKI_0517_ 1 1
Arthroderma_benhamiae_CBS_112371_ 1 1
Trichophyton_tonsurans_CBS_112818_ 1 1
Trichophyton_rubrum_CBS_118892_ 1 1
Aspergillus_sydowii_v1.0 1 1
Aspergillus_versicolor_v1.0 1 1
Tuber_melanosporum_Mel28_22 1 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   1 1
Entamoeba_dispar_1.2 2 2
Entamoeba_invadens_1.2 9 9
Entamoeba_histolytica_1 1 1
Selaginella_moellendorffii_ 2 2
Pinus_taeda   (Loblolly pine)   3 3
Picea_abies   (Norway spruce)   1 1
Eucalyptus_grandis_v201   (Rose gum)   3 3
Theobroma_cacao_B97-61/B2_v1   (Cacao)   3 3
Gossypium_raimondii_v221 3 3
Citrus_clementina_v165 3 3
Citrus_sinensis_v154   (Sweet orange)   4 4
Thellungiella_halophila_v173 11 11
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   16 15
Capsella_rubella_v183 15 15
Arabidopsis_lyrata_   (Lyrate rockcress)   16 15
Arabidopsis_thaliana_10   (Thale cress)   14 14
Carica_papaya_   (Papaya)   3 3
Medicago_truncatula_   (Barrel medic)   44 44
Phaseolus_vulgaris_v186   (French bean)   1 1
Glycine_max_v109   (Soybean)   2 2
Cucumis_sativus_v122   (Cucumber)   4 4
Fragaria_vesca_   (Wild strawberry)   24 24
Malus_domestica_v196   (Apple)   43 43
Prunus_persica_v139   (Peach)   7 7
Linum_usitatissimum_v200   (Flax)   21 20
Manihot_esculenta_v147   (Cassava)   4 3
Populus_trichocarpa_v156   (Black cottonwood)   8 8
Vitis_vinifera_   (Wine grape)   1 1
Mimulus_guttatus_v140   (Spotted monkey flower)   27 27
Solanum_lycopersicum_v.2.3   (Tomato)   8 8
Solanum_tuberosum_   (Potato)   11 11
Actinidia_chinensis_Hongyang_ 8 7
Aquilegia_coerulea_v195 11 11
Triticum_urartu_22 37 33
Triticum_aestivum_22   (Bread wheat)   47 47
Aegilops_tauschii_22 70 65
Brachypodium_distachyon_   (Stiff brome)   27 24
Oryza_barthii_22   (African wild rice)   30 20
Oryza_meridionalis_22 15 12
Oryza_glumaepatula_22 28 21
Oryza_glaberrima   (African rice)   14 12
Oryza_punctata_22 29 21
Oryza_nivara_22 29 23
Oryza_brachyantha_22   (Malo sina)   7 6
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   25 23
Oryza_sativa_v193   (Rice)   25 23
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   4 4
Panicum_virgatum_v202   (Switchgrass)   43 43
Setaria_italica_v164   (Foxtail millet)   19 18
Zea_mays_subsp._mays_   (Maize)   7 7
Zea_mays_v181   (Maize)   8 8
Sorghum_bicolor_   (Sorghum)   18 18
Musa_balbisiana   (Balbis banana)   2 2
Musa_acuminata_22   (Wild Malaysian banana)   2 2
Amborella_trichopoda_22 1 1
Physcomitrella_patens 4 4
Chlorella_variabilis_sp._NC64A_ 3 2
Volvox_carteri_f._nagariensis_ 1 1
Volvox_carteri_v199 1 1
Chlamydomonas_reinhardtii_4.0 1 1
Micromonas_pusilla_CCMP1545_v3.0 1 1
Porphyridium_purpureum_02_2012 1 1
Thecamonas_trahens_ATCC_50062_ 2 2
Bigelowiella_natans_CCMP2755_22 4 3
Giardia_lamblia_2.3 1 1
Cyanophora_paradoxa_ 3 3
Thalassiosira_pseudonana_CCMP1335 1 1
Perkinsus_marinus_ATCC_50983_ 6 6
Tetrahymena_thermophila_SB210_1_ 11 11
Ichthyophthirius_multifiliis_strain_G5_ 3 3
Neospora_caninum 2 2
Toxoplasma_gondii_VEG 2 2
Toxoplasma_gondii_ME49 2 2
Toxoplasma_gondii_GT1 2 2
Plasmodium_knowlesi_strain_H_ 1 1
Symbiodinium_minutum_clade_B1_v1.2 2 1
Naegleria_gruberi_ 12 12
Guillardia_theta_CCMP2712_v1.0_ 1 1
Emiliania_huxleyi_CCMP1516_ 2 2
Microcoleus_sp._PCC_7113 2 2
Gloeocapsa_sp._PCC_7428 1 1
Gloeobacter_violaceus_PCC_7421 2 2
Rivularia_sp._PCC_7116 1 1
Calothrix_sp._PCC_7507 1 1
Anabaena_variabilis_ATCC_29413 1 1
Nostoc_sp._PCC_7107 1 1
Nostoc_punctiforme_PCC_73102 1 1
Nostoc_sp._PCC_7120 1 1
Nostoc_sp._PCC_7524 1 1
Mycoplasma_synoviae_53 1 1
Eggerthella_sp._YY7918 1 1
Eggerthella_lenta_DSM_2243 1 1
Olsenella_uli_DSM_7084 1 1
Catenulispora_acidiphila_DSM_44928 1 1
Thermobifida_fusca_YX 1 1
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 1 1
Thermomonospora_curvata_DSM_43183 2 1
Streptosporangium_roseum_DSM_43021 1 1
Kitasatospora_setae_KM-6054 6 3
Streptomyces_sp._PAMC26508 3 2
Streptomyces_flavogriseus_ATCC_33331 3 2
Streptomyces_sp._SirexAA-E 1 1
Streptomyces_griseus_subsp._griseus_NBRC_13350 1 1
Streptomyces_bingchenggensis_BCW-1 2 1
Streptomyces_violaceusniger_Tu_4113 2 1
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 2 1
Actinosynnema_mirum_DSM_43827 1 1
Saccharomonospora_viridis_DSM_43017 1 1
Saccharopolyspora_erythraea_NRRL_2338 1 1
Amycolatopsis_mediterranei_U32 1 1
Kribbella_flavida_DSM_17836 4 2
Propionibacterium_propionicum_F0230a 1 1
Verrucosispora_maris_AB-18-032 1 1
Micromonospora_sp._L5 1 1
Micromonospora_aurantiaca_ATCC_27029 1 1
Segniliparus_rotundus_DSM_44985 1 1
Tsukamurella_paurometabola_DSM_20162 1 1
Nocardia_cyriacigeorgica_GUH-2 2 1
Amycolicicoccus_subflavus_DQS3-9A1 1 1
Mycobacterium_gilvum_PYR-GCK 2 1
Mycobacterium_marinum_M 1 1
Beutenbergia_cavernae_DSM_12333 1 1
Brachybacterium_faecium_DSM_4810 1 1
Isoptericola_variabilis_225 1 1
Xylanimonas_cellulosilytica_DSM_15894 1 1
[Cellvibrio]_gilvus_ATCC_13127 1 1
Arthrobacter_phenanthrenivorans_Sphe3 1 1
Arthrobacter_aurescens_TC1 1 1
Arthrobacter_sp._Rue61a 1 1
Arthrobacter_sp._FB24 1 1
Renibacterium_salmoninarum_ATCC_33209 1 1
Bifidobacterium_longum_subsp._longum_JDM301 1 1
Bifidobacterium_dentium_Bd1 1 1
Bifidobacterium_breve_ACS-071-V-Sch8b 1 1
Actinomyces_sp._F0330 1 1
Dehalococcoides_ethenogenes_195 1 1
Dehalococcoides_sp._BAV1 1 1
Dehalogenimonas_lykanthroporepellens_BL-DC-9 1 1
Natranaerobius_thermophilus_JW/NM-WN-LF 1 1
Symbiobacterium_thermophilum_IAM_14863 2 2
Clostridium_clariflavum_DSM_19732 1 1
Eubacterium_siraeum 1 1
Clostridium_thermocellum_ATCC_27405 3 3
Ruminococcus_bromii 1 1
Ruminococcus_albus_7 2 2
Desulfosporosinus_orientis_DSM_765 1 1
Syntrophobotulus_glycolicus_DSM_8271 1 1
Desulfitobacterium_hafniense_Y51 1 1
Desulfitobacterium_dehalogenans_ATCC_51507 1 1
Desulfotomaculum_acetoxidans_DSM_771 1 1
Acetobacterium_woodii_DSM_1030 1 1
Eubacterium_limosum_KIST612 1 1
Clostridium_phytofermentans_ISDg 2 2
Coprococcus_sp._ART55/1 1 1
Roseburia_hominis_A2-183 1 1
Roseburia_intestinalis 1 1
Butyrivibrio_fibrisolvens 1 1
Alkaliphilus_metalliredigens_QYMF 1 1
Clostridium_ljungdahlii_DSM_13528 2 2
Clostridium_kluyveri_DSM_555 1 1
Thermodesulfobium_narugense_DSM_14796 2 2
Thermoanaerobacter_tengcongensis_MB4 1 1
Paenibacillus_mucilaginosus_3016 2 2
Oceanobacillus_iheyensis_HTE831 2 2
Bacillus_atrophaeus_1942 1 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1 1
Bacillus_cellulosilyticus_DSM_2522 2 2
Gemmatimonas_aurantiaca_T-27 1 1
Chlorobium_limicola_DSM_245 1 1
Haliscomenobacter_hydrossis_DSM_1100 1 1
Salinibacter_ruber_M8 1 1
Flexibacter_litoralis_DSM_6794 1 1
Cyclobacterium_marinum_DSM_745 1 1
Leadbetterella_byssophila_DSM_17132 1 1
Dyadobacter_fermentans_DSM_18053 1 1
Spirosoma_linguale_DSM_74 1 1
Runella_slithyformis_DSM_19594 1 1
Tannerella_forsythia_ATCC_43037 1 1
Paludibacter_propionicigenes_WB4 2 2
Prevotella_melaninogenica_ATCC_25845 1 1
Prevotella_ruminicola_23 1 1
Porphyromonas_asaccharolytica_DSM_20707 1 1
Pedobacter_heparinus_DSM_2366 1 1
Candidatus_Protochlamydia_amoebophila_UWE25 1 1
Simkania_negevensis_Z 2 2
Planctomyces_brasiliensis_DSM_5305 1 1
Fretibacterium_fastidiosum 1 1
Sphaerochaeta_pleomorpha_str._Grapes 1 1
Sphaerochaeta_globus_str._Buddy 1 1
Thermodesulfobacterium_sp._OPB45 1 1
Calditerrivibrio_nitroreducens_DSM_19672 2 2
Thermotoga_lettingae_TMO 1 1
Thermotoga_thermarum_DSM_5069 1 1
Sulfurihydrogenibium_sp._YO3AOP1 1 1
Dictyoglomus_turgidum_DSM_6724 1 1
Dictyoglomus_thermophilum_H-6-12 1 1
Candidatus_Chloracidobacterium_thermophilum_B 1 1
Candidatus_Koribacter_versatilis_Ellin345 1 1
Desulfomonile_tiedjei_DSM_6799 1 1
Hippea_maritima_DSM_10411 1 1
Geobacter_uraniireducens_Rf4 1 1
Sorangium_cellulosum_'So_ce_56' 7 7
Anaeromyxobacter_sp._Fw109-5 1 1
Stigmatella_aurantiaca_DW4/3-1 1 1
Myxococcus_xanthus_DK_1622 1 1
Rhizobium_leguminosarum_bv._viciae_3841 1 1
Rhodomicrobium_vannielii_ATCC_17100 1 1
Psychrobacter_sp._PRwf-1 1 1
Cenarchaeum_symbiosum_A 5 5
Candidatus_Korarchaeum_cryptofilum_OPF8 1 1
Thermofilum_sp._1910b 1 1
Pyrobaculum_sp._1860 1 1
Pyrobaculum_calidifontis_JCM_11548 1 1
Pyrobaculum_arsenaticum_DSM_13514 1 1
Pyrobaculum_oguniense_TE7 1 1
Thermoproteus_neutrophilus_V24Sta 1 1
Pyrobaculum_aerophilum_str._IM2 1 1
Pyrobaculum_islandicum_DSM_4184 1 1
Methanococcoides_burtonii_DSM_6242 3 3
Methanosarcina_acetivorans_C2A 4 4
Methanosarcina_mazei_Go1 1 1
Methanosphaerula_palustris_E1-9c 1 1
Methanoplanus_petrolearius_DSM_11571 3 3
Methanoculleus_bourgensis_MS2 2 2
Methanoculleus_marisnigri_JR1 2 2
Thermococcus_sp._4557 1 1
Thermococcus_kodakarensis_KOD1 1 1
Thermococcus_gammatolerans_EJ3 1 1
Halopiger_xanaduensis_SH-6 1 1
Haloterrigena_turkmenica_DSM_5511 1 1
Natrialba_magadii_ATCC_43099 1 1
Halorubrum_lacusprofundi_ATCC_49239 1 1
Haloferax_mediterranei_ATCC_33500 1 1
Haloferax_volcanii_DS2 1 1
Aciduliprofundum_sp._MAR08-339 1 1
Aciduliprofundum_boonei_T469 2 2

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   50 50
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   45 45
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   27 25
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   14 13
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   19 19
Paracoccidioides_brasiliensis_Pb01_ 1 1
Paracoccidioides_brasiliensis_Pb03_ 1 1
Ajellomyces_dermatitidis_ER-3_ 1 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   2 2
Hordeum_vulgare_22   (Domesticated barley)   16 16
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   28 26
Neospora_caninum_Nc-Liverpool_6.2 2 2
Synechococcus_sp._JA-2-3B'a(2-13) 1 1
Synechococcus_sp._JA-3-3Ab 1 1
Oscillatoria_nigro-viridis_PCC_7112 1 1
Oscillatoria_acuminata_PCC_6304 2 2
Arthrospira_platensis_NIES-39 2 2
Cyanothece_sp._PCC_7822 1 1
Cyanothece_sp._PCC_7425 1 1
Cyanothece_sp._PCC_7424 1 1
Cyanothece_sp._ATCC_51142 1 1
Cyanobacterium_stanieri_PCC_7202 1 1
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 2 2
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 1 1
Calothrix_parietina_Calothrix_sp._PCC_6303 1 1
Gordonibacter_pamelaeae_7-10-1-b 1 1
Frankia_sp._EuI1c 1 1
Nocardiopsis_alba_ATCC_BAA-2165 1 1
Streptomyces_albus_J1074 1 1
Streptomyces_rapamycinicus_NRRL_5491 2 1
Streptomyces_davawensis_JCM_4913 2 1
Streptomyces_fulvissimus_DSM_40593 1 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 2 1
Saccharothrix_espanaensis_DSM_44229 1 1
Amycolatopsis_mediterranei_RB 1 1
Amycolatopsis_mediterranei_S699 1 1
Amycolatopsis_mediterranei_S699 1 1
Amycolatopsis_orientalis_HCCB10007 1 1
Mycobacterium_liflandii_128FXT 1 1
Mycobacterium_kansasii_ATCC_12478 3 3
Bifidobacterium_longum_NCC2705 1 1
Bifidobacterium_longum_DJO10A 1 1
Bifidobacterium_longum_subsp._infantis_157F 1 1
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 1 1
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 1 1
Bifidobacterium_longum_subsp._longum_KACC_91563 1 1
Bifidobacterium_longum_subsp._longum_BBMN68 1 1
Bifidobacterium_longum_subsp._longum_F8 1 1
Bifidobacterium_longum_subsp._longum_JCM_1217 1 1
Bifidobacterium_breve_UCC2003 1 1
Actinomyces_viscosus_C505 1 1
Dehalococcoides_mccartyi_GY50 1 1
Dehalococcoides_mccartyi_DCMB5 1 1
Dehalococcoides_mccartyi_BTF08 1 1
Dehalococcoides_sp._GT 1 1
Dehalococcoides_sp._VS 1 1
Dehalococcoides_sp._CBDB1 1 1
Clostridium_thermocellum_DSM_1313 3 3
[Clostridium]_stercorarium_Clostridiu_subsp._stercorarium_DSM_8532 2 2
Desulfitobacterium_dichloroeliminans_LMG_P-21439 1 1
Desulfitobacterium_hafniense_DCB-2 1 1
Desulfotomaculum_gibsoniae_DSM_7213 2 2
Roseburia_intestinalis_XB6B4 2 2
Clostridium_sp._SY8519 1 1
Clostridium_autoethanogenum_DSM_10061 2 2
Clostridium_kluyveri_NBRC_12016 1 1
Paenibacillus_sp._Y412MC10 1 1
Paenibacillus_mucilaginosus_KNP414 2 2
Paenibacillus_mucilaginosus_K02 2 2
Bacillus_licheniformis_9945A 1 1
Bacillus_subtilis_subsp._spizizenii_TU-B-10 1 1
Bacillus_subtilis_subsp._spizizenii_str._W23 1 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1 1
Chlorobium_phaeobacteroides_BS1 1 1
Salinibacter_ruber_DSM_13855 1 1
Emticicia_oligotrophica_DSM_17448 1 1
Geobacter_sp._M18 1 1
Sorangium_cellulosum_So0157-2 4 4
Myxococcus_stipitatus_DSM_14675 1 1
Rhizobium_etli_CFN_42 1 1
Rhizobium_etli_bv._mimosae_str._Mim1 1 1
Rhizobium_leguminosarum_bv._trifolii_WSM2304 1 1
Rhizobium_leguminosarum_bv._trifolii_WSM1325 1 1
Methanosarcina_mazei_Tuc01 1 1
Methanoregula_formicica_Methanoregula_formicicum_SMSP 1 1
Thermococcus_sp._AM4 1 1
Thermococcus_litoralis_DSM_5473 1 1
Halorhabdus_tiamatea_SARL4B 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   37 37
Pan_troglodytes_69_2.1.4   (Chimpanzee)   34 34
Gorilla_gorilla_69_3.1   (Western gorilla)   36 36
Pongo_abelii_69_2   (Sumatran orangutan)   38 37
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   36 36
Macaca_mulatta_69_1   (Rhesus monkey)   39 38
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   39 39
Otolemur_garnettii_69_3   (Small-eared galago)   37 37
Microcebus_murinus_69_1   (Gray mouse lemur)   39 36
Rattus_norvegicus_69_3.4   (Norway rat)   50 47
Mus_musculus_69_38   (House mouse)   64 64
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   52 37
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   42 42
Cavia_porcellus_69_3   (Domestic guinea pig)   46 46
Oryctolagus_cuniculus_69_2   (Rabbit)   36 36
Ochotona_princeps_69   (American pika)   45 35
Tupaia_belangeri_69   (Northern tree shrew)   38 29
Sus_scrofa_69_10.2   (Pig)   41 40
Bos_taurus_69_3.1   (Cattle)   47 47
Vicugna_pacos_69_1   (Alpaca)   41 32
Tursiops_truncatus_69_1   (Bottlenose dolphin)   30 29
Mustela_putorius_furo_69_1.0   (Domestic ferret)   34 34
Ailuropoda_melanoleuca_69_1   (Giant panda)   35 35
Canis_familiaris_69_3.1   (Dog)   35 35
Felis_catus_69   (Domestic cat)   39 31
Equus_caballus_69_2   (Horse)   42 42
Myotis_lucifugus_69_2.0   (Little brown bat)   44 44
Pteropus_vampyrus_69_1   (Large flying fox)   37 32
Sorex_araneus_69_1   (European shrew)   37 31
Erinaceus_europaeus_69   (Western European hedgehog)   29 26
Procavia_capensis_69_1   (Cape rock hyrax)   37 31
Loxodonta_africana_69_3   (African savanna elephant)   33 33
Echinops_telfairi_69   (Small Madagascar hedgehog)   41 29
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   42 32
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   29 21
Macropus_eugenii_69_1.0   (Tammar wallaby)   37 27
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   34 34
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   35 35
Ornithorhynchus_anatinus_69_5   (Platypus)   34 34
Petromyzon_marinus_69_7.0   (Sea lamprey)   10 10
Meleagris_gallopavo_69_2   (Turkey)   24 24
Gallus_gallus_69_2   (Chicken)   26 26
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   27 27
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   28 28
Anolis_carolinensis_69_2.0   (Green anole)   28 28
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   24 24
Latimeria_chalumnae_69_1   (Coelacanth)   21 20
Gadus_morhua_69_1   (Atlantic cod)   22 21
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   22 22
Takifugu_rubripes_69_4   (Torafugu)   30 29
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   24 24
Oryzias_latipes_69_1   (Japanese medaka)   21 21
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   21 21
Oreochromis_niloticus_69_1.0   (Nile tilapia)   28 28
Danio_rerio_69_9   (Zebrafish)   32 32
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   5 5
Ciona_intestinalis_69   (Vase tunicate)   10 10
Drosophila_melanogaster_69_5   (Fruit fly)   30 30
Caenorhabditis_elegans_69_215   (Roundworm)   15 15
Arabidopsis_thaliana_10   (Thale cress)   13 13

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   169 166
Homo_sapiens__(NCBI_version)   (Human)   61 61
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   64 64
Heliconius_numata__(Incomplete) 47 47
Loa_loa_v3.3_(Request)   (Eye worm)   18 18
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   11 11
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   15 15
Lotus_japonicus__(Early_assembly) 82 82
Malus_x_domestica_(Duplicate)   (Apple)   43 43
Ricinus_communis__(Early_assembly)   (Castor bean)   6 6
Nicotiana_benthamiana_0.4.4_(Early_draft) 21 18
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   8 8
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   8 8
NCBI_plasmid_sequences_(Plasmids) 6 6
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 1215 1215
STRING_v9.0.5_(STRING) 1695 1632
PDB_chains_(SCOP_1.75)_(PDB) 63 63
Uniprot_2018_03_genome 19390 18564
NCBI_2017_08_genome 21151 20307
TargetDB__(Targets) 28 28
NCBI_viral_sequences_(Viral) 73 73
Protozoadb_2010_08_(Protozoadb) 14 14
UniProt__viral_sequences_(Viral) 211 211
Protein_Data_Bank_(all_PDB_sequenc) 409 409

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]