SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for Aerolisin/ETX pore-forming domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Aerolisin/ETX pore-forming domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Ornithorhynchus_anatinus_76_5   (Platypus)   1 1
Saccoglossus_kowalevskii_v3.0 1 1
Petromyzon_marinus_76_7.0   (Sea lamprey)   26 26
Gallus_gallus_76_4   (Chicken)   1 1
Anas_platyrhynchos_76_1.0   (Mallard)   1 1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   1 1
Anolis_carolinensis_76_2.0   (Green anole)   3 3
Xenopus_laevis_   (African clawed frog)   4 4
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   5 5
Latimeria_chalumnae_76_1   (Coelacanth)   5 5
Lepisosteus_oculatus_76   (Spotted gar)   7 7
Gadus_morhua_76_1   (Atlantic cod)   6 6
Takifugu_rubripes_76_4   (Torafugu)   1 1
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   3 3
Oryzias_latipes_76_1   (Japanese medaka)   3 3
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   2 2
Poecilia_formosa_76   (Amazon molly)   5 5
Oreochromis_niloticus_76_1.0   (Nile tilapia)   9 9
Astyanax_mexicanus_76   (Mexican tetra)   6 6
Danio_rerio_76_9   (Zebrafish)   12 12
Oikopleura_dioica 1 1
Adineta_vaga 9 9
Octopus_bimaculoides_280 4 4
Crassostrea_gigas_22   (Pacific oyster)   5 5
Lottia_gigantea_   (Owl limpet)   3 3
Helobdella_robusta_ 4 4
Capitella_sp._I_ 6 6
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1 1
Bombyx_mori_   (Domestic silkworm)   1 1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   1 1
Strigamia_maritima_22 3 3
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   18 18
Pristionchus_pacificus_ 1 1
Meloidogyne_incognita_   (Southern root-knot nematode)   2 2
Meloidogyne_hapla_ 1 1
Onchocerca_volvulus_22 3 3
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   4 4
Caenorhabditis_japonica_ 2 2
Caenorhabditis_brenneri_ 3 3
Caenorhabditis_remanei_ 2 2
Caenorhabditis_elegans_76_235   (Roundworm)   6 6
Caenorhabditis_briggsae_2 2 2
Trichinella_spiralis_22 3 3
Hymenolepis_microstoma_ 2 2
Echinococcus_multilocularis_ 2 2
Echinococcus_granulosus_ 2 2
Taenia_solium_   (Pork tapeworm)   2 2
Schistosoma_mansoni_ 1 1
Mnemiopsis_leidyi   (Sea walnut)   9 9
Acropora_digitifera_v1.0 5 5
Nematostella_vectensis_1.0   (Starlet sea anemone)   10 10
Hydra_vulgaris 2 2
Proterospongia_sp._ATCC_50818_ 1 1
Mortierella_verticillata_NRRL_6337_ 1 1
Sphaerobolus_stellatus_v1.0 2 2
Coprinopsis_cinerea_okayama7_130_v3 3 3
Galerina_marginata_v1.0 2 2
Hebeloma_cylindrosporum_h7_v2.0 2 2
Laccaria_bicolor_S238N-H82_ 4 4
Agaricus_bisporus_var._bisporus_ 2 2
Schizophyllum_commune_ 12 12
Stereum_hirsutum_FP-91666_SS1__v1.0 1 1
Heterobasidion_annosum_ 2 2
Gloeophyllum_trabeumv1.0 1 1
Fomitiporia_mediterranea_v1.0 4 4
Tulasnella_calospora_AL13/4D_v1.0 2 2
Postia_placenta_ 3 3
Fomitopsis_pinicolav1.0 3 3
Fomitopsis_pinicola_FP-58527_SS1_v3.0 4 4
Dichomitus_squalens 2 2
Trametes_versicolor_v1.0 4 4
Magnaporthe_poae_ATCC_64411_22 1 1
Podospora_anserina_ 1 1
Glomerella_graminicola_22 1 1
Botrytis_cinerea_B05.10_ 5 5
Sclerotinia_sclerotiorum_ 1 1
Setosphaeria_turcica_v1.0 1 1
Cochliobolus_miyabeanus_ATCC_44560_v1.0 1 1
Cochliobolus_victoriae_FI3_v1.0 1 1
Cochliobolus_carbonum_26-R-13_v1.0 1 1
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   1 1
Alternaria_brassicicola_ 1 1
Trichophyton_equinum_CBS_127.97_ 1 1
Trichophyton_verrucosum_HKI_0517_ 1 1
Aspergillus_brasiliensis_v1.0 1 1
Aspergillus_carbonarius_ITEM_5010_ 1 1
Aspergillus_tubingensis_v1.0 1 1
Aspergillus_wentii_v1.0 1 1
Dictyostelium_discoideum 1 1
Selaginella_moellendorffii_ 21 21
Pinus_taeda   (Loblolly pine)   1 1
Picea_abies   (Norway spruce)   1 1
Gossypium_raimondii_v221 10 10
Carica_papaya_   (Papaya)   12 12
Cucumis_sativus_v122   (Cucumber)   8 8
Fragaria_vesca_   (Wild strawberry)   10 10
Malus_domestica_v196   (Apple)   4 4
Linum_usitatissimum_v200   (Flax)   5 5
Vitis_vinifera_   (Wine grape)   3 3
Actinidia_chinensis_Hongyang_ 1 1
Aquilegia_coerulea_v195 2 2
Triticum_urartu_22 2 2
Triticum_aestivum_22   (Bread wheat)   7 7
Aegilops_tauschii_22 6 6
Brachypodium_distachyon_   (Stiff brome)   3 3
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   1 1
Panicum_virgatum_v202   (Switchgrass)   7 7
Setaria_italica_v164   (Foxtail millet)   1 1
Zea_mays_subsp._mays_   (Maize)   3 3
Zea_mays_v181   (Maize)   4 4
Bigelowiella_natans_CCMP2755_22 2 2
Cyanophora_paradoxa_ 3 3
Pythium_arrhenomanes_ATCC_12531_22 1 1
Calothrix_sp._PCC_7507 1 1
Frankia_alni_ACN14a 1 1
Kitasatospora_setae_KM-6054 1 1
Saccharopolyspora_erythraea_NRRL_2338 1 1
Salinispora_arenicola_CNS-205 4 4
Verrucosispora_maris_AB-18-032 1 1
Clostridium_novyi_NT 1 1
Lysinibacillus_sphaericus_C3-41 5 5
Bacillus_anthracis_str._A0248 1 1
Fibrella_aestuarina 1 1
Candidatus_Solibacter_usitatus_Ellin6076 1 1
Burkholderia_glumae_BGR1 2 2
Aeromonas_veronii_B565 1 1
Aeromonas_salmonicida_subsp._salmonicida_A449 1 1
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 1 1
Vibrio_harveyi_ATCC_BAA-1116 2 2
Photobacterium_profundum_SS9 1 1
Shewanella_denitrificans_OS217 1 1
Shewanella_baltica_OS185 1 1
Pseudoalteromonas_sp._SM9913 1 1
Hahella_chejuensis_KCTC_2396 1 1
Marinomonas_posidonica_IVIA-Po-181 1 1
Pectobacterium_wasabiae_WPP163 1 1
Pseudomonas_entomophila_L48 1 1
Francisella_cf._novicida_3523 1 1
Methanosarcina_mazei_Go1 1 1
Methanosarcina_barkeri_str._Fusaro 1 1
Halogeometricum_borinquense_DSM_11551 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   7 7
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   3 3
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   3 3
Hordeum_vulgare_22   (Domesticated barley)   10 10
Prochlorococcus_marinus_str._MIT_9303 1 1
Nocardiopsis_alba_ATCC_BAA-2165 1 1
Clostridium_botulinum_BKT015925 4 4
Enterococcus_mundtii_QU_25 2 2
Paenibacillus_larvae_subsp._larvae_DSM_25430 1 1
Bacillus_thuringiensis_HD-789 3 3
Bacillus_thuringiensis_MC28 4 4
Bacillus_thuringiensis_serovar_finitimus_YBT-020 3 3
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 2 2
Bacillus_cereus_biovar_anthracis_str._CI 1 1
Bacillus_anthracis_str._H9401 1 1
Bacillus_anthracis_str._CDC_684 1 1
Bacillus_anthracis_str._'Ames_Ancestor' 1 1
Bacillus_anthracis_str._A2012 1 1
Echinicola_vietnamensis_DSM_17526 2 2
Aeromonas_hydrophila_ML09-119 1 1
Vibrio_nigripulchritudo_VibrioScope 1 1
Shewanella_baltica_BA175 1 1
Shewanella_baltica_OS117 1 1
Shewanella_baltica_OS195 1 1
Shewanella_baltica_OS155 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number   Proteins
Ornithorhynchus_anatinus_69_5   (Platypus)   1 1
Petromyzon_marinus_69_7.0   (Sea lamprey)   23 23
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   5 5
Latimeria_chalumnae_69_1   (Coelacanth)   3 3
Gadus_morhua_69_1   (Atlantic cod)   6 6
Takifugu_rubripes_69_4   (Torafugu)   1 1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   3 3
Oryzias_latipes_69_1   (Japanese medaka)   2 2
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   2 2
Oreochromis_niloticus_69_1.0   (Nile tilapia)   8 8
Danio_rerio_69_9   (Zebrafish)   10 10
Caenorhabditis_elegans_69_215   (Roundworm)   2 2

Others
Genome     Number   Proteins
Loa_loa_v3.3_(Request)   (Eye worm)   5 5
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   6 6
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1 1
Moniliophthora_perniciosa_FA553__(Genome_survey) 2 2
Malus_x_domestica_(Duplicate)   (Apple)   4 4
Ricinus_communis__(Early_assembly)   (Castor bean)   4 4
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 2 2
NCBI_plasmid_sequences_(Plasmids) 43 43
PDB_chains_(SCOP_1.75)_(PDB) 4 4
UniProt__viral_sequences_(Viral) 1 1
NCBI_viral_sequences_(Viral) 1 1
STRING_v9.0.5_(STRING) 114 114
Protein_Data_Bank_(all_PDB_sequenc) 140 140
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 171 157
Uniprot_2018_03_genome 2849 2840
TargetDB__(Targets) 3 3
NCBI_2017_08_genome 3215 3207

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]