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Domain combinations for Plant lectins/antimicrobial peptides superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Plant lectins/antimicrobial peptides domain in that genome.

Complete genomes
Genome     Number   Proteins
Saccoglossus_kowalevskii_v3.0 2 2
Adineta_vaga 52 23
Daphnia_pulex_   (Common water flea)   2 2
Mnemiopsis_leidyi   (Sea walnut)   1 1
Sphaeroforma_arctica_JP610_ 1 1
Conidiobolus_coronatus_NRRL28638_v1.0 5 5
Mortierella_verticillata_NRRL_6337_ 4 4
Wallemia_sebi_v1.0 1 1
Sphaerobolus_stellatus_v1.0 2 1
Hydnomerulius_pinastri_v2.0 1 1
Galerina_marginata_v1.0 1 1
Postia_placenta_ 2 2
Daldinia_eschscholzii_EC12_v1.0 13 8
Apiospora_montagnei_NRRL_25634_v1.0 19 11
Magnaporthe_poae_ATCC_64411_22 17 16
Magnaporthe_grisea_70-15_ 53 25
Podospora_anserina_ 26 14
Sporotrichum_thermophile_ATCC_42464_ 9 6
Thielavia_terrestris_NRRL_8126_ 13 10
Chaetomium_globosum_CBS_148.51_ 18 14
Neurospora_tetrasperma_ 7 5
Neurospora_discreta_FGSC_8579_ 2 2
Neurospora_crassa_OR74A_ 6 4
Cryphonectria_parasitica_   (Chestnut blight fungus)   3 3
Verticillium_albo-atrum_VaMs.102_ 18 8
Verticillium_dahliae_VdLs.17_ 23 8
Acremonium_alcalophilumv_1.0 15 9
Glomerella_graminicola_22 24 14
Fusarium_graminearum_ 23 11
Nectria_haematococca_mpVI_ 25 17
Fusarium_oxysporum_f._sp._lycopersici_4286_ 28 15
Fusarium_verticillioides_7600_ 23 16
Trichoderma_asperellum_CBS_433.97_v1.0 17 9
Trichoderma_atroviride_ 11 8
Trichoderma_citrinoviride_v1.0 5 4
Trichoderma_reesei_1.2 6 5
Trichoderma_virens_Gv29-8_ 21 15
Trichoderma_longibrachiatum_ATCC_18648_v1.0 5 4
Trichoderma_harzianum_CBS_226.95_v1.0 16 12
Amorphotheca_resinae_v1.0   (Creosote fungus)   6 4
Botrytis_cinerea_B05.10_ 16 9
Sclerotinia_sclerotiorum_ 22 12
Blumeria_graminis_22 11 8
Didymella_exigua_CBS_183.55_v1.0 24 13
Leptosphaeria_maculans_22 29 12
Setosphaeria_turcica_v1.0 22 9
Cochliobolus_miyabeanus_ATCC_44560_v1.0 25 13
Cochliobolus_victoriae_FI3_v1.0 27 17
Cochliobolus_carbonum_26-R-13_v1.0 28 15
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   24 14
Alternaria_brassicicola_ 25 13
Cochliobolus_lunatus_m118_v2.0 28 15
Pyrenophora_teres_f._teres_22 21 10
Pyrenophora_tritici-repentis_ 18 9
Stagonospora_nodorum_ 43 26
Mycosphaerella_graminicola_IPO323_ 5 3
Zasmidium_cellare_ATCC_36951_v1.0 20 13
Dothistroma_septosporum 5 4
Septoria_musiva_v1.0 4 4
Mycosphaerella_fijiensis_CIRAD86_ 4 4
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 11 7
Paracoccidioides_brasiliensis_Pb18_ 3 2
Coccidioides_posadasii_RMSCC_3488_ 3 2
Coccidioides_immitis_RS_ 5 3
Ajellomyces_dermatitidis_SLH14081_ 2 2
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 4 3
Microsporum_canis_CBS_113480_ 12 11
Trichophyton_equinum_CBS_127.97_ 4 4
Trichophyton_verrucosum_HKI_0517_ 7 6
Arthroderma_benhamiae_CBS_112371_ 6 5
Trichophyton_tonsurans_CBS_112818_ 5 4
Trichophyton_rubrum_CBS_118892_ 9 8
Uncinocarpus_reesii_1704_ 7 6
Aspergillus_zonatus_v1.0 9 6
Penicillium_chrysogenum_Wisconsin_54-1255_ 10 9
Penicillium_chrysogenum_v1.0 11 10
Aspergillus_acidus_v1.0 8 7
Aspergillus_fumigatus_Af293 7 6
Aspergillus_brasiliensis_v1.0 10 10
Aspergillus_nidulans_FGSC_A4_ 13 11
Aspergillus_sydowii_v1.0 14 10
Aspergillus_versicolor_v1.0 21 16
Aspergillus_glaucus 9 8
Aspergillus_carbonarius_ITEM_5010_ 10 10
Neosartorya_fischeri_NRRL_181_ 9 8
Aspergillus_terreus_NIH2624_ 9 9
Aspergillus_tubingensis_v1.0 11 10
Aspergillus_wentii_v1.0 8 8
Aspergillus_oryzae_RIB40_ 5 4
Aspergillus_niger_22 7 5
Aspergillus_niger_ATCC_1015_ 5 5
Aspergillus_flavus_NRRL3357_ 3 3
Aspergillus_clavatus_NRRL_1_ 6 5
Penicillium_marneffei_ATCC_18224_ 17 12
Tuber_melanosporum_Mel28_22 13 7
Tuber_melanosporum_Vittad_   (Perigord truffle)   14 8
Candida_guilliermondii_ATCC_6260_ 1 1
Debaromyces_hansenii 1 1
Catenaria_anguillulae_PL171_v1.0 9 7
Allomyces_macrogynus_ATCC_38327_ 5 5
Spizellomyces_punctatus_DAOM_BR117_ 3 3
Entamoeba_dispar_1.2 1 1
Selaginella_moellendorffii_ 25 19
Pinus_taeda   (Loblolly pine)   19 17
Picea_abies   (Norway spruce)   8 7
Eucalyptus_grandis_v201   (Rose gum)   14 14
Theobroma_cacao_B97-61/B2_v1   (Cacao)   7 7
Gossypium_raimondii_v221 13 13
Citrus_clementina_v165 6 6
Citrus_sinensis_v154   (Sweet orange)   5 5
Thellungiella_halophila_v173 12 12
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   18 18
Capsella_rubella_v183 14 14
Arabidopsis_lyrata_   (Lyrate rockcress)   10 10
Arabidopsis_thaliana_10   (Thale cress)   10 10
Carica_papaya_   (Papaya)   5 5
Medicago_truncatula_   (Barrel medic)   7 7
Phaseolus_vulgaris_v186   (French bean)   7 7
Glycine_max_v109   (Soybean)   8 8
Cucumis_sativus_v122   (Cucumber)   4 4
Fragaria_vesca_   (Wild strawberry)   5 5
Malus_domestica_v196   (Apple)   7 7
Prunus_persica_v139   (Peach)   6 6
Linum_usitatissimum_v200   (Flax)   26 23
Manihot_esculenta_v147   (Cassava)   13 13
Populus_trichocarpa_v156   (Black cottonwood)   24 24
Vitis_vinifera_   (Wine grape)   6 6
Mimulus_guttatus_v140   (Spotted monkey flower)   3 3
Solanum_lycopersicum_v.2.3   (Tomato)   31 23
Solanum_tuberosum_   (Potato)   32 23
Actinidia_chinensis_Hongyang_ 8 8
Aquilegia_coerulea_v195 7 7
Triticum_urartu_22 14 8
Triticum_aestivum_22   (Bread wheat)   51 33
Aegilops_tauschii_22 17 11
Brachypodium_distachyon_   (Stiff brome)   42 17
Oryza_barthii_22   (African wild rice)   12 9
Oryza_meridionalis_22 10 7
Oryza_glumaepatula_22 13 10
Oryza_glaberrima   (African rice)   12 9
Oryza_punctata_22 18 11
Oryza_nivara_22 14 11
Oryza_brachyantha_22   (Malo sina)   6 5
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   13 10
Oryza_sativa_v193   (Rice)   13 10
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   10 7
Panicum_virgatum_v202   (Switchgrass)   38 24
Setaria_italica_v164   (Foxtail millet)   16 12
Zea_mays_subsp._mays_   (Maize)   13 13
Zea_mays_v181   (Maize)   12 12
Sorghum_bicolor_   (Sorghum)   10 10
Musa_balbisiana   (Balbis banana)   7 7
Musa_acuminata_22   (Wild Malaysian banana)   8 8
Amborella_trichopoda_22 6 6
Physcomitrella_patens 10 10
Asterochloris_sp._Cgr/DA1pho_v1.0 1 1
Chlorella_variabilis_sp._NC64A_ 1 1
Volvox_carteri_f._nagariensis_ 3 1
Volvox_carteri_v199 4 1
Chlamydomonas_reinhardtii_4.0 5 2
Phaeodactylum_tricornutumCCAP_1055/1 2 2
Fragilariopsis_cylindrus 2 2
Thalassiosira_pseudonana_CCMP1335 7 3
Neospora_caninum 1 1
Symbiodinium_minutum_clade_B1_v1.2 2 2
Emiliania_huxleyi_CCMP1516_ 2 2

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Strains
Genome     Number   Proteins
Paracoccidioides_brasiliensis_Pb01_ 2 2
Paracoccidioides_brasiliensis_Pb03_ 1 1
Coccidioides_posadasii_str._Silveira_ 5 3
Coccidioides_immitis_RMSCC_3703_ 2 1
Coccidioides_immitis_RMSCC_2394_ 3 2
Coccidioides_immitis_H538.4_ 4 3
Ajellomyces_dermatitidis_ER-3_ 4 2
Histoplasma_capsulatum_H143 2 2
Histoplasma_capsulatum_H88 3 3
Histoplasma_capsulatum_G186AR 3 2
Aspergillus_fumigatus_A1163_ 8 7
Batrachochytrium_dendrobatidis_JEL423_ 86 19
Batrachochytrium_dendrobatidis_JAM81_ 80 15
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   7 7
Hordeum_vulgare_22   (Domesticated barley)   8 5
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   13 10
Neospora_caninum_Nc-Liverpool_6.2 1 1

Longest transcript per gene
Genome     Number   Proteins
Arabidopsis_thaliana_10   (Thale cress)   10 10

Others
Genome     Number   Proteins
Moniliophthora_perniciosa_FA553__(Genome_survey) 1 1
Picea_sitchensis__(Incomplete)   (Sitka spruce)   8 8
Lotus_japonicus__(Early_assembly) 2 2
Malus_x_domestica_(Duplicate)   (Apple)   7 7
Ricinus_communis__(Early_assembly)   (Castor bean)   4 4
Nicotiana_benthamiana_0.4.4_(Early_draft) 9 9
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   29 22
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   31 23
NCBI_plasmid_sequences_(Plasmids) 2 2
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 501 501
Protozoadb_2010_08_(Protozoadb) 2 2
NCBI_2017_08_genome 2608 1844
PDB_chains_(SCOP_1.75)_(PDB) 29 13
Uniprot_2018_03_genome 9756 6282
Protein_Data_Bank_(all_PDB_sequenc) 173 67
STRING_v9.0.5_(STRING) 369 265

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