SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for PMP inhibitors superfamily in groups of genomes

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a PMP inhibitors domain in that genome.

Complete genomes
Genome     Number   Proteins
Gorilla_gorilla_76_3.1   (Western gorilla)   1 1
Pongo_abelii_76_2   (Sumatran orangutan)   1 1
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1 1
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   3 3
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   1 1
Cavia_porcellus_76_3   (Domestic guinea pig)   1 1
Ochotona_princeps_76   (American pika)   1 1
Bos_taurus_76_3.1   (Cattle)   1 1
Ovis_aries_76_3.1   (Sheep)   1 1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   1 1
Felis_catus_76_6.2   (Domestic cat)   1 1
Pteropus_vampyrus_76_1   (Large flying fox)   1 1
Saccoglossus_kowalevskii_v3.0 37 37
Gallus_gallus_76_4   (Chicken)   1 1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   1 1
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   1 1
Anolis_carolinensis_76_2.0   (Green anole)   1 1
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   2 2
Latimeria_chalumnae_76_1   (Coelacanth)   1 1
Lepisosteus_oculatus_76   (Spotted gar)   1 1
Gadus_morhua_76_1   (Atlantic cod)   1 1
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   1 1
Takifugu_rubripes_76_4   (Torafugu)   6 6
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   2 2
Oryzias_latipes_76_1   (Japanese medaka)   3 3
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   1 1
Poecilia_formosa_76   (Amazon molly)   1 1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   1 1
Astyanax_mexicanus_76   (Mexican tetra)   1 1
Danio_rerio_76_9   (Zebrafish)   4 4
Octopus_bimaculoides_280 23 16
Crassostrea_gigas_22   (Pacific oyster)   4 4
Lottia_gigantea_   (Owl limpet)   3 2
Capitella_sp._I_ 2 1
Danaus_plexippus_OGS1.0   (Monarch butterfly)   21 10
Heliconius_melpomene_   (Postman butterfly)   9 2
Bombyx_mori_   (Domestic silkworm)   11 6
Nasonia_vitripennis_   (Jewel wasp)   22 8
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1 1
Atta_cephalotes_v1.1 2 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1 1
Megaselia_scalaris_22 1 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   6 1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   10 2
Anopheles_darlingi_22   (American malaria mosquito)   8 1
Anopheles_gambiae_49_3j   (African malaria mosquito)   3 1
Tribolium_castaneum_3.0   (Red flour beetle)   5 2
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   4 3
Rhodnius_prolixus_22 16 7
Mnemiopsis_leidyi   (Sea walnut)   5 5
Hydra_vulgaris 1 1
Amphimedon_queenslandica 2 1
Trichoplax_adhaerens_ 8 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   2 2
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   4 2

Longest transcript per gene
Genome     Number   Proteins
Gorilla_gorilla_69_3.1   (Western gorilla)   1 1
Pongo_abelii_69_2   (Sumatran orangutan)   1 1
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1 1
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   1 1
Cavia_porcellus_69_3   (Domestic guinea pig)   1 1
Ochotona_princeps_69   (American pika)   1 1
Bos_taurus_69_3.1   (Cattle)   1 1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   1 1
Felis_catus_69   (Domestic cat)   1 1
Pteropus_vampyrus_69_1   (Large flying fox)   1 1
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   1 1
Anolis_carolinensis_69_2.0   (Green anole)   1 1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   1 1
Gadus_morhua_69_1   (Atlantic cod)   1 1
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   1 1
Takifugu_rubripes_69_4   (Torafugu)   2 2
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   1 1
Oryzias_latipes_69_1   (Japanese medaka)   1 1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   1 1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   1 1
Danio_rerio_69_9   (Zebrafish)   2 2

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Others
Genome     Number   Proteins
Homo_sapiens__(NCBI_version)   (Human)   1 1
Heliconius_numata__(Incomplete) 10 2
STRING_v9.0.5_(STRING) 79 38
PDB_chains_(SCOP_1.75)_(PDB) 6 6
NCBI_2017_08_genome 899 434
Uniprot_2018_03_genome 1058 441
Protein_Data_Bank_(all_PDB_sequenc) 15 15
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 25 25

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