Domain combinations for PMP inhibitors superfamily in groups of genomes

• All genomes
• All eukaryote genomes (domain E)
• All bacterial genomes (domain B+A)
• All eubacterial genomes (domain B)
• All archaeal genomes (domain A)

Groups of genomes may be slower than individual genomes.

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Click on a genome below to view all domain combinations containing a PMP inhibitors domain in that genome.

Complete genomes

Genome		Number	Proteins
Gorilla_gorilla_76_3.1	(Western gorilla)	1	1
Pongo_abelii_76_2	(Sumatran orangutan)	1	1
Dipodomys_ordii_76_1	(Ord's kangaroo rat)	1	1
Ictidomys_tridecemlineatus_76_2	(Thirteen-lined ground squirrel)	3	3
Heterocephalus_glaber_v1.7-2	(Naked mole-rat)	1	1
Cavia_porcellus_76_3	(Domestic guinea pig)	1	1
Ochotona_princeps_76	(American pika)	1	1
Bos_taurus_76_3.1	(Cattle)	1	1
Ovis_aries_76_3.1	(Sheep)	1	1
Tursiops_truncatus_76_1	(Bottlenose dolphin)	1	1
Felis_catus_76_6.2	(Domestic cat)	1	1
Pteropus_vampyrus_76_1	(Large flying fox)	1	1
Saccoglossus_kowalevskii_v3.0		37	37
Gallus_gallus_76_4	(Chicken)	1	1
Ficedula_albicollis_76_1.0	(Collared flycatcher)	1	1
Pelodiscus_sinensis_76_1.0	(Chinese soft-shelled turtle)	1	1
Anolis_carolinensis_76_2.0	(Green anole)	1	1
Xenopus_tropicalis_76_4.2	(Tropical clawed frog)	2	2
Latimeria_chalumnae_76_1	(Coelacanth)	1	1
Lepisosteus_oculatus_76	(Spotted gar)	1	1
Gadus_morhua_76_1	(Atlantic cod)	1	1
Tetraodon_nigroviridis_76_8	(Spotted green pufferfish)	1	1
Takifugu_rubripes_76_4	(Torafugu)	6	6
Gasterosteus_aculeatus_76_1	(Three-spined stickleback)	2	2
Oryzias_latipes_76_1	(Japanese medaka)	3	3
Xiphophorus_maculatus_76_4.4.2	(Southern platyfish)	1	1
Poecilia_formosa_76	(Amazon molly)	1	1
Oreochromis_niloticus_76_1.0	(Nile tilapia)	1	1
Astyanax_mexicanus_76	(Mexican tetra)	1	1
Danio_rerio_76_9	(Zebrafish)	4	4
Octopus_bimaculoides_280		23	16
Crassostrea_gigas_22	(Pacific oyster)	4	4
Lottia_gigantea_	(Owl limpet)	3	2
Capitella_sp._I_		2	1
Danaus_plexippus_OGS1.0	(Monarch butterfly)	21	10
Heliconius_melpomene_	(Postman butterfly)	9	2
Bombyx_mori_	(Domestic silkworm)	11	6
Nasonia_vitripennis_	(Jewel wasp)	22	8
Pogonomyrmex_barbatus_v1.2	(Red harvester ant)	1	1
Atta_cephalotes_v1.1		2	1
Camponotus_floridanus_v3.3	(Florida carpenter ant)	1	1
Megaselia_scalaris_22		1	1
Aedes_aegypti_55_(Not_maintained)	(Yellow fever mosquito)	6	1
Culex_pipiens_quinquefasciatus_	(Southern house mosquito)	10	2
Anopheles_darlingi_22	(American malaria mosquito)	8	1
Anopheles_gambiae_49_3j	(African malaria mosquito)	3	1
Tribolium_castaneum_3.0	(Red flour beetle)	5	2
Pediculus_humanus_corporis__(Early_assembly)	(Human body louse)	4	3
Rhodnius_prolixus_22		16	7
Mnemiopsis_leidyi	(Sea walnut)	5	5
Hydra_vulgaris		1	1
Amphimedon_queenslandica		2	1
Trichoplax_adhaerens_		8	1

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Strains

Genome		Number	Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)	(Tropical clawed frog)	2	2
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)	(African malaria mosquito)	4	2

Longest transcript per gene

Genome		Number	Proteins
Gorilla_gorilla_69_3.1	(Western gorilla)	1	1
Pongo_abelii_69_2	(Sumatran orangutan)	1	1
Dipodomys_ordii_69_1	(Ord's kangaroo rat)	1	1
Ictidomys_tridecemlineatus_69_2	(Thirteen-lined ground squirrel)	1	1
Cavia_porcellus_69_3	(Domestic guinea pig)	1	1
Ochotona_princeps_69	(American pika)	1	1
Bos_taurus_69_3.1	(Cattle)	1	1
Tursiops_truncatus_69_1	(Bottlenose dolphin)	1	1
Felis_catus_69	(Domestic cat)	1	1
Pteropus_vampyrus_69_1	(Large flying fox)	1	1
Pelodiscus_sinensis_69_1.0	(Chinese soft-shelled turtle)	1	1
Anolis_carolinensis_69_2.0	(Green anole)	1	1
Xenopus_tropicalis_69_4.2	(Tropical clawed frog)	1	1
Gadus_morhua_69_1	(Atlantic cod)	1	1
Tetraodon_nigroviridis_69_8	(Spotted green pufferfish)	1	1
Takifugu_rubripes_69_4	(Torafugu)	2	2
Gasterosteus_aculeatus_69_1	(Three-spined stickleback)	1	1
Oryzias_latipes_69_1	(Japanese medaka)	1	1
Xiphophorus_maculatus_69_4.4.2	(Southern platyfish)	1	1
Oreochromis_niloticus_69_1.0	(Nile tilapia)	1	1
Danio_rerio_69_9	(Zebrafish)	2	2

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Others

Genome		Number	Proteins
Homo_sapiens__(NCBI_version)	(Human)	1	1
Heliconius_numata__(Incomplete)		10	2
Protein_Data_Bank_(all_PDB_sequenc)		15	15
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ)		25	25
STRING_v9.0.5_(STRING)		79	38
PDB_chains_(SCOP_1.75)_(PDB)		6	6
NCBI_2017_08_genome		899	434
Uniprot_2018_03_genome		1058	441

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