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Domain combinations for Snake toxin-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Snake toxin-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   181 159
Pan_troglodytes_76_2.1.4   (Chimpanzee)   41 38
Gorilla_gorilla_76_3.1   (Western gorilla)   50 45
Pongo_abelii_76_2   (Sumatran orangutan)   41 36
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   46 40
Papio_anubis_76   (Olive baboon)   53 45
Macaca_mulatta_76_1   (Rhesus monkey)   64 53
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   81 69
Otolemur_garnettii_76_3   (Small-eared galago)   45 39
Microcebus_murinus_76_1   (Gray mouse lemur)   34 29
Rattus_norvegicus_76_5.0   (Norway rat)   63 56
Mus_musculus_76_38   (House mouse)   138 132
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   30 27
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   38 34
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   47 41
Cavia_porcellus_76_3   (Domestic guinea pig)   41 38
Oryctolagus_cuniculus_76_2   (Rabbit)   35 31
Ochotona_princeps_76   (American pika)   30 27
Tupaia_belangeri_76   (Northern tree shrew)   24 23
Sus_scrofa_76_10.2   (Pig)   50 41
Bos_taurus_76_3.1   (Cattle)   42 38
Ovis_aries_76_3.1   (Sheep)   58 47
Vicugna_pacos_76_1   (Alpaca)   19 17
Tursiops_truncatus_76_1   (Bottlenose dolphin)   34 30
Mustela_putorius_furo_76_1.0   (Domestic ferret)   39 34
Ailuropoda_melanoleuca_76_1   (Giant panda)   47 41
Canis_familiaris_76_3.1   (Dog)   54 49
Felis_catus_76_6.2   (Domestic cat)   46 40
Equus_caballus_76_2   (Horse)   40 34
Myotis_lucifugus_76_2.0   (Little brown bat)   40 35
Pteropus_vampyrus_76_1   (Large flying fox)   30 28
Sorex_araneus_76_1   (European shrew)   20 18
Erinaceus_europaeus_76   (Western European hedgehog)   24 24
Procavia_capensis_76_1   (Cape rock hyrax)   33 30
Loxodonta_africana_76_3   (African savanna elephant)   45 42
Echinops_telfairi_76   (Small Madagascar hedgehog)   21 18
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   46 42
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   17 14
Macropus_eugenii_76_1.0   (Tammar wallaby)   14 14
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   43 39
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   35 30
Ornithorhynchus_anatinus_76_5   (Platypus)   25 25
Saccoglossus_kowalevskii_v3.0 48 48
Petromyzon_marinus_76_7.0   (Sea lamprey)   14 14
Meleagris_gallopavo_76_2   (Turkey)   34 33
Gallus_gallus_76_4   (Chicken)   27 26
Anas_platyrhynchos_76_1.0   (Mallard)   25 25
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   27 26
Ficedula_albicollis_76_1.0   (Collared flycatcher)   28 27
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   47 40
Anolis_carolinensis_76_2.0   (Green anole)   60 48
Xenopus_laevis_   (African clawed frog)   66 64
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   74 52
Latimeria_chalumnae_76_1   (Coelacanth)   25 24
Lepisosteus_oculatus_76   (Spotted gar)   39 34
Gadus_morhua_76_1   (Atlantic cod)   25 25
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   36 36
Takifugu_rubripes_76_4   (Torafugu)   69 68
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   36 36
Oryzias_latipes_76_1   (Japanese medaka)   37 35
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   30 28
Poecilia_formosa_76   (Amazon molly)   36 31
Oreochromis_niloticus_76_1.0   (Nile tilapia)   66 55
Astyanax_mexicanus_76   (Mexican tetra)   38 33
Danio_rerio_76_9   (Zebrafish)   66 54
Oikopleura_dioica 9 9
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   31 31
Ciona_intestinalis_76   (Vase tunicate)   33 33
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   9 9
Adineta_vaga 60 60
Octopus_bimaculoides_280 14 14
Crassostrea_gigas_22   (Pacific oyster)   37 34
Lottia_gigantea_   (Owl limpet)   15 15
Helobdella_robusta_ 12 11
Capitella_sp._I_ 27 26
Danaus_plexippus_OGS1.0   (Monarch butterfly)   10 10
Heliconius_melpomene_   (Postman butterfly)   12 12
Bombyx_mori_   (Domestic silkworm)   4 4
Nasonia_vitripennis_   (Jewel wasp)   9 9
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   16 16
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   10 10
Linepithema_humile_v1.1   (Argentine ant)   10 10
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   9 9
Solenopsis_invicta_v.2.2.3   (Red fire ant)   7 7
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   11 11
Atta_cephalotes_v1.1 6 6
Camponotus_floridanus_v3.3   (Florida carpenter ant)   10 10
Lucilia_cuprina   (Australian sheep blowfly)   7 7
Drosophila_grimshawi_1.3 12 12
Drosophila_willistoni_1.3 10 10
Drosophila_pseudoobscura_2.13 11 11
Drosophila_persimilis_1.3 11 11
Drosophila_suzukii 12 11
Drosophila_yakuba_1.3 12 12
Drosophila_simulans_1.3 13 13
Drosophila_sechellia_1.3 13 13
Drosophila_melanogaster_76_5   (Fruit fly)   29 29
Drosophila_erecta_1.3 12 12
Drosophila_ananassae_1.3 10 10
Drosophila_virilis_1.2 11 11
Drosophila_mojavensis_1.3 11 11
Megaselia_scalaris_22 6 6
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   12 12
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   11 11
Anopheles_darlingi_22   (American malaria mosquito)   5 5
Anopheles_gambiae_49_3j   (African malaria mosquito)   9 9
Tribolium_castaneum_3.0   (Red flour beetle)   16 16
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   6 6
Acyrthosiphon_pisum_   (Pea aphid)   7 7
Rhodnius_prolixus_22 5 5
Daphnia_pulex_   (Common water flea)   16 16
Strigamia_maritima_22 25 24
Sarcoptes_scabiei 3 3
Tetranychus_urticae_   (Two-spotted spider mite)   14 14
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   7 7
Pristionchus_pacificus_ 27 27
Meloidogyne_incognita_   (Southern root-knot nematode)   2 2
Meloidogyne_hapla_ 1 1
Onchocerca_volvulus_22 9 9
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   19 19
Caenorhabditis_japonica_ 9 9
Caenorhabditis_brenneri_ 18 18
Caenorhabditis_remanei_ 21 21
Caenorhabditis_elegans_76_235   (Roundworm)   38 38
Caenorhabditis_briggsae_2 19 18
Trichinella_spiralis_22 3 3
Hymenolepis_microstoma_ 4 4
Echinococcus_multilocularis_ 5 5
Echinococcus_granulosus_ 5 5
Taenia_solium_   (Pork tapeworm)   4 4
Schistosoma_mansoni_ 9 9
Mnemiopsis_leidyi   (Sea walnut)   6 6
Thelohanellus_kitauei 2 2
Acropora_digitifera_v1.0 44 42
Nematostella_vectensis_1.0   (Starlet sea anemone)   25 25
Hydra_vulgaris 7 7
Arabidopsis_thaliana_10   (Thale cress)   1 1
Ectocarpus_siliculosus 1 1
Naegleria_gruberi_ 3 3

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   98 76
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   24 24
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   11 11
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   13 13
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   25 25

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   65 60
Pan_troglodytes_69_2.1.4   (Chimpanzee)   39 36
Gorilla_gorilla_69_3.1   (Western gorilla)   41 37
Pongo_abelii_69_2   (Sumatran orangutan)   41 36
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   40 34
Macaca_mulatta_69_1   (Rhesus monkey)   41 35
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   46 39
Otolemur_garnettii_69_3   (Small-eared galago)   45 39
Microcebus_murinus_69_1   (Gray mouse lemur)   34 29
Rattus_norvegicus_69_3.4   (Norway rat)   52 50
Mus_musculus_69_38   (House mouse)   64 58
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   28 25
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   37 33
Cavia_porcellus_69_3   (Domestic guinea pig)   41 38
Oryctolagus_cuniculus_69_2   (Rabbit)   35 31
Ochotona_princeps_69   (American pika)   30 27
Tupaia_belangeri_69   (Northern tree shrew)   24 23
Sus_scrofa_69_10.2   (Pig)   30 25
Bos_taurus_69_3.1   (Cattle)   41 37
Vicugna_pacos_69_1   (Alpaca)   19 17
Tursiops_truncatus_69_1   (Bottlenose dolphin)   34 30
Mustela_putorius_furo_69_1.0   (Domestic ferret)   39 34
Ailuropoda_melanoleuca_69_1   (Giant panda)   47 41
Canis_familiaris_69_3.1   (Dog)   46 42
Felis_catus_69   (Domestic cat)   31 28
Equus_caballus_69_2   (Horse)   40 34
Myotis_lucifugus_69_2.0   (Little brown bat)   38 33
Pteropus_vampyrus_69_1   (Large flying fox)   30 28
Sorex_araneus_69_1   (European shrew)   20 18
Erinaceus_europaeus_69   (Western European hedgehog)   24 24
Procavia_capensis_69_1   (Cape rock hyrax)   31 28
Loxodonta_africana_69_3   (African savanna elephant)   39 36
Echinops_telfairi_69   (Small Madagascar hedgehog)   21 18
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   20 18
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   17 14
Macropus_eugenii_69_1.0   (Tammar wallaby)   14 14
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   37 33
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   34 29
Ornithorhynchus_anatinus_69_5   (Platypus)   21 21
Petromyzon_marinus_69_7.0   (Sea lamprey)   14 14
Meleagris_gallopavo_69_2   (Turkey)   27 26
Gallus_gallus_69_2   (Chicken)   23 22
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   27 26
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   37 31
Anolis_carolinensis_69_2.0   (Green anole)   46 38
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   59 42
Latimeria_chalumnae_69_1   (Coelacanth)   18 17
Gadus_morhua_69_1   (Atlantic cod)   25 25
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   36 36
Takifugu_rubripes_69_4   (Torafugu)   30 29
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   29 29
Oryzias_latipes_69_1   (Japanese medaka)   34 32
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   30 28
Oreochromis_niloticus_69_1.0   (Nile tilapia)   53 46
Danio_rerio_69_9   (Zebrafish)   50 39
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   23 23
Ciona_intestinalis_69   (Vase tunicate)   33 33
Drosophila_melanogaster_69_5   (Fruit fly)   12 12
Caenorhabditis_elegans_69_215   (Roundworm)   25 25
Arabidopsis_thaliana_10   (Thale cress)   1 1

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   182 161
Homo_sapiens__(NCBI_version)   (Human)   80 69
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   62 56
Heliconius_numata__(Incomplete) 2 2
Loa_loa_v3.3_(Request)   (Eye worm)   12 12
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   8 8
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   6 6
Protein_Data_Bank_(all_PDB_sequenc) 363 321
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 924 924
TargetDB__(Targets) 64 52
STRING_v9.0.5_(STRING) 1305 1214
Uniprot_2018_03_genome 12772 11554
NCBI_2017_08_genome 18110 16302
NCBI_viral_sequences_(Viral) 1 1
PDB_chains_(SCOP_1.75)_(PDB) 76 68
UniProt__viral_sequences_(Viral) 2 2

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