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Domain combinations for Defensin-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Defensin-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   20 20
Pan_troglodytes_76_2.1.4   (Chimpanzee)   12 12
Gorilla_gorilla_76_3.1   (Western gorilla)   8 8
Pongo_abelii_76_2   (Sumatran orangutan)   10 10
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   7 7
Papio_anubis_76   (Olive baboon)   13 13
Macaca_mulatta_76_1   (Rhesus monkey)   13 13
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   5 5
Otolemur_garnettii_76_3   (Small-eared galago)   3 3
Microcebus_murinus_76_1   (Gray mouse lemur)   7 7
Rattus_norvegicus_76_5.0   (Norway rat)   23 23
Mus_musculus_76_38   (House mouse)   44 44
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   3 3
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   1 1
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   1 1
Cavia_porcellus_76_3   (Domestic guinea pig)   4 4
Oryctolagus_cuniculus_76_2   (Rabbit)   8 8
Ochotona_princeps_76   (American pika)   4 4
Tupaia_belangeri_76   (Northern tree shrew)   3 3
Sus_scrofa_76_10.2   (Pig)   5 5
Bos_taurus_76_3.1   (Cattle)   17 17
Ovis_aries_76_3.1   (Sheep)   8 8
Vicugna_pacos_76_1   (Alpaca)   3 3
Tursiops_truncatus_76_1   (Bottlenose dolphin)   1 1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   2 2
Ailuropoda_melanoleuca_76_1   (Giant panda)   6 6
Canis_familiaris_76_3.1   (Dog)   4 4
Equus_caballus_76_2   (Horse)   4 4
Myotis_lucifugus_76_2.0   (Little brown bat)   9 9
Pteropus_vampyrus_76_1   (Large flying fox)   2 2
Sorex_araneus_76_1   (European shrew)   1 1
Erinaceus_europaeus_76   (Western European hedgehog)   5 5
Procavia_capensis_76_1   (Cape rock hyrax)   2 2
Loxodonta_africana_76_3   (African savanna elephant)   6 6
Echinops_telfairi_76   (Small Madagascar hedgehog)   2 2
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   17 17
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   3 3
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   5 5
Ornithorhynchus_anatinus_76_5   (Platypus)   3 3
Meleagris_gallopavo_76_2   (Turkey)   10 10
Gallus_gallus_76_4   (Chicken)   10 10
Anas_platyrhynchos_76_1.0   (Mallard)   11 11
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   8 8
Ficedula_albicollis_76_1.0   (Collared flycatcher)   11 11
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   2 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   9 9

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   1 1

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   13 13
Pan_troglodytes_69_2.1.4   (Chimpanzee)   11 11
Gorilla_gorilla_69_3.1   (Western gorilla)   7 7
Pongo_abelii_69_2   (Sumatran orangutan)   10 10
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   7 7
Macaca_mulatta_69_1   (Rhesus monkey)   12 12
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   5 5
Otolemur_garnettii_69_3   (Small-eared galago)   3 3
Microcebus_murinus_69_1   (Gray mouse lemur)   7 7
Rattus_norvegicus_69_3.4   (Norway rat)   22 22
Mus_musculus_69_38   (House mouse)   42 42
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   3 3
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   1 1
Cavia_porcellus_69_3   (Domestic guinea pig)   4 4
Oryctolagus_cuniculus_69_2   (Rabbit)   8 8
Ochotona_princeps_69   (American pika)   4 4
Tupaia_belangeri_69   (Northern tree shrew)   3 3
Sus_scrofa_69_10.2   (Pig)   5 5
Bos_taurus_69_3.1   (Cattle)   15 15
Vicugna_pacos_69_1   (Alpaca)   3 3
Tursiops_truncatus_69_1   (Bottlenose dolphin)   1 1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   2 2
Ailuropoda_melanoleuca_69_1   (Giant panda)   6 6
Canis_familiaris_69_3.1   (Dog)   4 4
Felis_catus_69   (Domestic cat)   2 2
Equus_caballus_69_2   (Horse)   4 4
Myotis_lucifugus_69_2.0   (Little brown bat)   8 8
Pteropus_vampyrus_69_1   (Large flying fox)   2 2
Sorex_araneus_69_1   (European shrew)   1 1
Erinaceus_europaeus_69   (Western European hedgehog)   5 5
Procavia_capensis_69_1   (Cape rock hyrax)   2 2
Loxodonta_africana_69_3   (African savanna elephant)   6 6
Echinops_telfairi_69   (Small Madagascar hedgehog)   2 2
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   16 16
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   3 3
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   5 5
Ornithorhynchus_anatinus_69_5   (Platypus)   3 3
Meleagris_gallopavo_69_2   (Turkey)   10 10
Gallus_gallus_69_2   (Chicken)   9 9
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   8 8

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   16 16
Homo_sapiens__(NCBI_version)   (Human)   14 14
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   39 39
PDB_chains_(SCOP_1.75)_(PDB) 23 21
TargetDB__(Targets) 2 2
STRING_v9.0.5_(STRING) 206 205
Protein_Data_Bank_(all_PDB_sequenc) 236 228
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 382 382
NCBI_2017_08_genome 903 892
Uniprot_2018_03_genome 1427 1404

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