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Domain combinations for Trefoil superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Trefoil domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   20 18
Pan_troglodytes_76_2.1.4   (Chimpanzee)   11 10
Gorilla_gorilla_76_3.1   (Western gorilla)   12 11
Pongo_abelii_76_2   (Sumatran orangutan)   11 10
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   8 7
Papio_anubis_76   (Olive baboon)   9 9
Macaca_mulatta_76_1   (Rhesus monkey)   11 10
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   14 11
Otolemur_garnettii_76_3   (Small-eared galago)   12 11
Microcebus_murinus_76_1   (Gray mouse lemur)   6 5
Rattus_norvegicus_76_5.0   (Norway rat)   8 7
Mus_musculus_76_38   (House mouse)   10 9
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   7 7
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   12 9
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   11 10
Cavia_porcellus_76_3   (Domestic guinea pig)   10 8
Oryctolagus_cuniculus_76_2   (Rabbit)   8 7
Ochotona_princeps_76   (American pika)   10 8
Tupaia_belangeri_76   (Northern tree shrew)   4 3
Sus_scrofa_76_10.2   (Pig)   9 8
Bos_taurus_76_3.1   (Cattle)   9 8
Ovis_aries_76_3.1   (Sheep)   12 10
Vicugna_pacos_76_1   (Alpaca)   2 2
Tursiops_truncatus_76_1   (Bottlenose dolphin)   9 8
Mustela_putorius_furo_76_1.0   (Domestic ferret)   9 8
Ailuropoda_melanoleuca_76_1   (Giant panda)   10 9
Canis_familiaris_76_3.1   (Dog)   11 9
Felis_catus_76_6.2   (Domestic cat)   9 8
Equus_caballus_76_2   (Horse)   12 11
Myotis_lucifugus_76_2.0   (Little brown bat)   8 7
Pteropus_vampyrus_76_1   (Large flying fox)   9 8
Sorex_araneus_76_1   (European shrew)   3 3
Erinaceus_europaeus_76   (Western European hedgehog)   5 5
Procavia_capensis_76_1   (Cape rock hyrax)   4 4
Loxodonta_africana_76_3   (African savanna elephant)   11 10
Echinops_telfairi_76   (Small Madagascar hedgehog)   7 6
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   6 6
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   2 2
Macropus_eugenii_76_1.0   (Tammar wallaby)   7 6
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   7 6
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   11 9
Ornithorhynchus_anatinus_76_5   (Platypus)   9 8
Saccoglossus_kowalevskii_v3.0 18 14
Petromyzon_marinus_76_7.0   (Sea lamprey)   2 2
Meleagris_gallopavo_76_2   (Turkey)   6 5
Gallus_gallus_76_4   (Chicken)   7 6
Anas_platyrhynchos_76_1.0   (Mallard)   6 5
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   8 6
Ficedula_albicollis_76_1.0   (Collared flycatcher)   6 5
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   8 7
Anolis_carolinensis_76_2.0   (Green anole)   10 6
Xenopus_laevis_   (African clawed frog)   83 32
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   17 9
Latimeria_chalumnae_76_1   (Coelacanth)   9 9
Lepisosteus_oculatus_76   (Spotted gar)   11 10
Gadus_morhua_76_1   (Atlantic cod)   8 8
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   6 6
Takifugu_rubripes_76_4   (Torafugu)   10 10
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   6 6
Oryzias_latipes_76_1   (Japanese medaka)   8 8
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   6 6
Poecilia_formosa_76   (Amazon molly)   6 6
Oreochromis_niloticus_76_1.0   (Nile tilapia)   7 7
Astyanax_mexicanus_76   (Mexican tetra)   7 7
Danio_rerio_76_9   (Zebrafish)   12 12
Oikopleura_dioica 24 19
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   36 32
Ciona_intestinalis_76   (Vase tunicate)   34 25
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   5 5
Adineta_vaga 19 15
Octopus_bimaculoides_280 1 1
Crassostrea_gigas_22   (Pacific oyster)   1 1
Lottia_gigantea_   (Owl limpet)   4 3
Helobdella_robusta_ 2 2
Capitella_sp._I_ 13 7
Danaus_plexippus_OGS1.0   (Monarch butterfly)   2 2
Heliconius_melpomene_   (Postman butterfly)   1 1
Bombyx_mori_   (Domestic silkworm)   1 1
Nasonia_vitripennis_   (Jewel wasp)   1 1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1 1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1 1
Atta_cephalotes_v1.1 1 1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   1 1
Anopheles_darlingi_22   (American malaria mosquito)   1 1
Anopheles_gambiae_49_3j   (African malaria mosquito)   1 1
Tribolium_castaneum_3.0   (Red flour beetle)   1 1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1 1
Rhodnius_prolixus_22 1 1
Daphnia_pulex_   (Common water flea)   2 2
Sarcoptes_scabiei 1 1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1 1
Pristionchus_pacificus_ 3 3
Meloidogyne_hapla_ 1 1
Onchocerca_volvulus_22 1 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   1 1
Caenorhabditis_japonica_ 2 2
Caenorhabditis_brenneri_ 2 2
Caenorhabditis_remanei_ 2 2
Caenorhabditis_elegans_76_235   (Roundworm)   4 4
Trichinella_spiralis_22 1 1
Hymenolepis_microstoma_ 1 1
Taenia_solium_   (Pork tapeworm)   1 1
Schistosoma_mansoni_ 1 1
Mnemiopsis_leidyi   (Sea walnut)   4 4
Acropora_digitifera_v1.0 9 6
Nematostella_vectensis_1.0   (Starlet sea anemone)   4 2
Hydra_vulgaris 5 4
Amphimedon_queenslandica 9 5
Trichoplax_adhaerens_ 4 4
Proterospongia_sp._ATCC_50818_ 1 1
Monosiga_brevicollis_ 8 8
Mortierella_verticillata_NRRL_6337_ 4 2
Coccomyxa_subellipsoidea_sp._C-169_v2 2 2
Chlorella_variabilis_sp._NC64A_ 1 1
Chlorella_vulgaris_ 2 2
Cyanidioschyzon_merolae_strain_10D_22 22 15
Cyanidioschyzon_merolae 22 15
Porphyridium_purpureum_02_2012 2 1
Thecamonas_trahens_ATCC_50062_ 1 1
Pythium_iwayamai_DAOM_BR242034_22 3 3
Pythium_arrhenomanes_ATCC_12531_22 1 1
Pythium_ultimum_v1.7-2 2 2
Pythium_aphanidermatum_DAOM_BR444_22 1 1
Pythium_irregulare_DAOM_BR486_22 2 2
Pythium_vexans_DAOM_BR484_22 1 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1 1
Phytophthora_sojae_1.1 1 1
Phytophthora_infestans_T30-4_ 1 1
Phytophthora_capsici_ 1 1
Hyaloperonospora_arabidopsidis_22 1 1
Symbiodinium_minutum_clade_B1_v1.2 1 1
Guillardia_theta_CCMP2712_v1.0_ 2 2
Emiliania_huxleyi_CCMP1516_ 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   47 22
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1 1
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   12 11
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   2 2

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   13 10
Pan_troglodytes_69_2.1.4   (Chimpanzee)   11 10
Gorilla_gorilla_69_3.1   (Western gorilla)   10 9
Pongo_abelii_69_2   (Sumatran orangutan)   11 10
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   8 7
Macaca_mulatta_69_1   (Rhesus monkey)   10 9
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   12 9
Otolemur_garnettii_69_3   (Small-eared galago)   10 9
Microcebus_murinus_69_1   (Gray mouse lemur)   6 5
Rattus_norvegicus_69_3.4   (Norway rat)   11 10
Mus_musculus_69_38   (House mouse)   8 7
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   7 7
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   9 7
Cavia_porcellus_69_3   (Domestic guinea pig)   10 8
Oryctolagus_cuniculus_69_2   (Rabbit)   9 8
Ochotona_princeps_69   (American pika)   10 8
Tupaia_belangeri_69   (Northern tree shrew)   4 3
Sus_scrofa_69_10.2   (Pig)   8 7
Bos_taurus_69_3.1   (Cattle)   9 8
Vicugna_pacos_69_1   (Alpaca)   2 2
Tursiops_truncatus_69_1   (Bottlenose dolphin)   9 8
Mustela_putorius_furo_69_1.0   (Domestic ferret)   9 8
Ailuropoda_melanoleuca_69_1   (Giant panda)   10 9
Canis_familiaris_69_3.1   (Dog)   10 8
Felis_catus_69   (Domestic cat)   6 5
Equus_caballus_69_2   (Horse)   10 9
Myotis_lucifugus_69_2.0   (Little brown bat)   8 7
Pteropus_vampyrus_69_1   (Large flying fox)   9 8
Sorex_araneus_69_1   (European shrew)   3 3
Erinaceus_europaeus_69   (Western European hedgehog)   5 5
Procavia_capensis_69_1   (Cape rock hyrax)   4 4
Loxodonta_africana_69_3   (African savanna elephant)   8 7
Echinops_telfairi_69   (Small Madagascar hedgehog)   7 6
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1 1
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   2 2
Macropus_eugenii_69_1.0   (Tammar wallaby)   7 6
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   7 6
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   11 9
Ornithorhynchus_anatinus_69_5   (Platypus)   9 8
Petromyzon_marinus_69_7.0   (Sea lamprey)   2 2
Meleagris_gallopavo_69_2   (Turkey)   6 5
Gallus_gallus_69_2   (Chicken)   5 4
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   8 6
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   8 7
Anolis_carolinensis_69_2.0   (Green anole)   6 5
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   13 6
Latimeria_chalumnae_69_1   (Coelacanth)   8 8
Gadus_morhua_69_1   (Atlantic cod)   6 6
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   5 5
Takifugu_rubripes_69_4   (Torafugu)   5 5
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   4 4
Oryzias_latipes_69_1   (Japanese medaka)   7 7
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   6 6
Oreochromis_niloticus_69_1.0   (Nile tilapia)   7 7
Danio_rerio_69_9   (Zebrafish)   12 12
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   11 10
Ciona_intestinalis_69   (Vase tunicate)   34 25
Caenorhabditis_elegans_69_215   (Roundworm)   2 2

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   23 20
Homo_sapiens__(NCBI_version)   (Human)   11 10
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   9 8
Loa_loa_v3.3_(Request)   (Eye worm)   1 1
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   1 1
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1 1
PDB_chains_(SCOP_1.75)_(PDB) 5 4
Protein_Data_Bank_(all_PDB_sequenc) 49 42
TargetDB__(Targets) 1 1
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 86 86
STRING_v9.0.5_(STRING) 290 252
Uniprot_2018_03_genome 2572 2154
NCBI_2017_08_genome 2983 2485

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