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Domain combinations for Cystine-knot cytokines superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Cystine-knot cytokines domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   160 160
Pan_troglodytes_76_2.1.4   (Chimpanzee)   66 66
Gorilla_gorilla_76_3.1   (Western gorilla)   89 89
Pongo_abelii_76_2   (Sumatran orangutan)   66 66
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   61 61
Papio_anubis_76   (Olive baboon)   70 70
Macaca_mulatta_76_1   (Rhesus monkey)   85 85
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   115 115
Otolemur_garnettii_76_3   (Small-eared galago)   65 65
Microcebus_murinus_76_1   (Gray mouse lemur)   44 44
Rattus_norvegicus_76_5.0   (Norway rat)   66 66
Mus_musculus_76_38   (House mouse)   97 97
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   48 48
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   62 62
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   59 59
Cavia_porcellus_76_3   (Domestic guinea pig)   63 63
Oryctolagus_cuniculus_76_2   (Rabbit)   56 56
Ochotona_princeps_76   (American pika)   47 47
Tupaia_belangeri_76   (Northern tree shrew)   38 38
Sus_scrofa_76_10.2   (Pig)   71 71
Bos_taurus_76_3.1   (Cattle)   69 69
Ovis_aries_76_3.1   (Sheep)   57 57
Vicugna_pacos_76_1   (Alpaca)   26 26
Tursiops_truncatus_76_1   (Bottlenose dolphin)   58 58
Mustela_putorius_furo_76_1.0   (Domestic ferret)   57 57
Ailuropoda_melanoleuca_76_1   (Giant panda)   60 60
Canis_familiaris_76_3.1   (Dog)   71 71
Felis_catus_76_6.2   (Domestic cat)   57 57
Equus_caballus_76_2   (Horse)   56 56
Myotis_lucifugus_76_2.0   (Little brown bat)   57 57
Pteropus_vampyrus_76_1   (Large flying fox)   56 56
Sorex_araneus_76_1   (European shrew)   36 36
Erinaceus_europaeus_76   (Western European hedgehog)   46 46
Procavia_capensis_76_1   (Cape rock hyrax)   46 46
Loxodonta_africana_76_3   (African savanna elephant)   77 77
Echinops_telfairi_76   (Small Madagascar hedgehog)   41 41
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   64 64
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   31 31
Macropus_eugenii_76_1.0   (Tammar wallaby)   45 45
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   60 60
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   60 60
Ornithorhynchus_anatinus_76_5   (Platypus)   55 55
Saccoglossus_kowalevskii_v3.0 54 53
Petromyzon_marinus_76_7.0   (Sea lamprey)   28 28
Meleagris_gallopavo_76_2   (Turkey)   54 54
Gallus_gallus_76_4   (Chicken)   52 52
Anas_platyrhynchos_76_1.0   (Mallard)   57 57
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   54 54
Ficedula_albicollis_76_1.0   (Collared flycatcher)   55 55
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   58 58
Anolis_carolinensis_76_2.0   (Green anole)   54 54
Xenopus_laevis_   (African clawed frog)   224 224
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   66 66
Latimeria_chalumnae_76_1   (Coelacanth)   79 79
Lepisosteus_oculatus_76   (Spotted gar)   78 78
Gadus_morhua_76_1   (Atlantic cod)   72 72
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   81 81
Takifugu_rubripes_76_4   (Torafugu)   193 193
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   87 87
Oryzias_latipes_76_1   (Japanese medaka)   76 76
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   77 77
Poecilia_formosa_76   (Amazon molly)   78 76
Oreochromis_niloticus_76_1.0   (Nile tilapia)   96 96
Astyanax_mexicanus_76   (Mexican tetra)   85 85
Danio_rerio_76_9   (Zebrafish)   121 121
Oikopleura_dioica 4 3
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   22 22
Ciona_intestinalis_76   (Vase tunicate)   22 22
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   55 49
Adineta_vaga 12 12
Octopus_bimaculoides_280 60 59
Crassostrea_gigas_22   (Pacific oyster)   32 31
Lottia_gigantea_   (Owl limpet)   30 30
Helobdella_robusta_ 16 15
Capitella_sp._I_ 40 40
Danaus_plexippus_OGS1.0   (Monarch butterfly)   18 18
Heliconius_melpomene_   (Postman butterfly)   15 15
Bombyx_mori_   (Domestic silkworm)   14 14
Nasonia_vitripennis_   (Jewel wasp)   15 15
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   20 20
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   22 21
Linepithema_humile_v1.1   (Argentine ant)   24 23
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   21 21
Solenopsis_invicta_v.2.2.3   (Red fire ant)   18 18
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   20 20
Atta_cephalotes_v1.1 21 21
Camponotus_floridanus_v3.3   (Florida carpenter ant)   22 22
Lucilia_cuprina   (Australian sheep blowfly)   20 19
Drosophila_grimshawi_1.3 20 20
Drosophila_willistoni_1.3 18 18
Drosophila_pseudoobscura_2.13 24 24
Drosophila_persimilis_1.3 17 17
Drosophila_suzukii 24 23
Drosophila_yakuba_1.3 19 19
Drosophila_simulans_1.3 16 16
Drosophila_sechellia_1.3 21 21
Drosophila_melanogaster_76_5   (Fruit fly)   45 44
Drosophila_erecta_1.3 19 19
Drosophila_ananassae_1.3 18 18
Drosophila_virilis_1.2 20 20
Drosophila_mojavensis_1.3 20 20
Megaselia_scalaris_22 6 6
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   20 20
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   16 16
Anopheles_darlingi_22   (American malaria mosquito)   13 12
Anopheles_gambiae_49_3j   (African malaria mosquito)   19 18
Tribolium_castaneum_3.0   (Red flour beetle)   28 27
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   19 19
Acyrthosiphon_pisum_   (Pea aphid)   17 17
Rhodnius_prolixus_22 15 15
Daphnia_pulex_   (Common water flea)   73 73
Strigamia_maritima_22 28 28
Sarcoptes_scabiei 16 16
Tetranychus_urticae_   (Two-spotted spider mite)   26 26
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   35 32
Pristionchus_pacificus_ 14 14
Meloidogyne_incognita_   (Southern root-knot nematode)   7 7
Meloidogyne_hapla_ 8 8
Onchocerca_volvulus_22 15 15
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   15 15
Caenorhabditis_japonica_ 19 19
Caenorhabditis_brenneri_ 22 22
Caenorhabditis_remanei_ 21 21
Caenorhabditis_elegans_76_235   (Roundworm)   29 29
Caenorhabditis_briggsae_2 18 18
Trichinella_spiralis_22 11 10
Hymenolepis_microstoma_ 6 6
Echinococcus_multilocularis_ 5 5
Echinococcus_granulosus_ 5 5
Taenia_solium_   (Pork tapeworm)   6 6
Schistosoma_mansoni_ 5 5
Mnemiopsis_leidyi   (Sea walnut)   12 12
Thelohanellus_kitauei 4 4
Acropora_digitifera_v1.0 22 21
Nematostella_vectensis_1.0   (Starlet sea anemone)   24 24
Hydra_vulgaris 16 16
Amphimedon_queenslandica 10 10
Trichoplax_adhaerens_ 6 6

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   116 116
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   47 46
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   22 20
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   18 18
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   21 21

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   72 72
Pan_troglodytes_69_2.1.4   (Chimpanzee)   61 61
Gorilla_gorilla_69_3.1   (Western gorilla)   68 68
Pongo_abelii_69_2   (Sumatran orangutan)   64 64
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   58 58
Macaca_mulatta_69_1   (Rhesus monkey)   62 62
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   60 60
Otolemur_garnettii_69_3   (Small-eared galago)   62 62
Microcebus_murinus_69_1   (Gray mouse lemur)   44 44
Rattus_norvegicus_69_3.4   (Norway rat)   60 60
Mus_musculus_69_38   (House mouse)   63 63
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   48 48
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   61 61
Cavia_porcellus_69_3   (Domestic guinea pig)   59 59
Oryctolagus_cuniculus_69_2   (Rabbit)   55 55
Ochotona_princeps_69   (American pika)   47 47
Tupaia_belangeri_69   (Northern tree shrew)   38 38
Sus_scrofa_69_10.2   (Pig)   59 59
Bos_taurus_69_3.1   (Cattle)   65 65
Vicugna_pacos_69_1   (Alpaca)   26 26
Tursiops_truncatus_69_1   (Bottlenose dolphin)   58 58
Mustela_putorius_furo_69_1.0   (Domestic ferret)   57 57
Ailuropoda_melanoleuca_69_1   (Giant panda)   58 58
Canis_familiaris_69_3.1   (Dog)   59 59
Felis_catus_69   (Domestic cat)   44 44
Equus_caballus_69_2   (Horse)   54 54
Myotis_lucifugus_69_2.0   (Little brown bat)   56 56
Pteropus_vampyrus_69_1   (Large flying fox)   56 56
Sorex_araneus_69_1   (European shrew)   36 36
Erinaceus_europaeus_69   (Western European hedgehog)   46 46
Procavia_capensis_69_1   (Cape rock hyrax)   46 46
Loxodonta_africana_69_3   (African savanna elephant)   63 63
Echinops_telfairi_69   (Small Madagascar hedgehog)   41 41
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   32 32
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   31 31
Macropus_eugenii_69_1.0   (Tammar wallaby)   45 45
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   51 51
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   58 58
Ornithorhynchus_anatinus_69_5   (Platypus)   51 51
Petromyzon_marinus_69_7.0   (Sea lamprey)   28 28
Meleagris_gallopavo_69_2   (Turkey)   48 48
Gallus_gallus_69_2   (Chicken)   48 48
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   52 52
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   52 52
Anolis_carolinensis_69_2.0   (Green anole)   51 51
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   61 61
Latimeria_chalumnae_69_1   (Coelacanth)   69 69
Gadus_morhua_69_1   (Atlantic cod)   67 67
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   76 76
Takifugu_rubripes_69_4   (Torafugu)   78 78
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   72 72
Oryzias_latipes_69_1   (Japanese medaka)   61 61
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   77 77
Oreochromis_niloticus_69_1.0   (Nile tilapia)   83 83
Danio_rerio_69_9   (Zebrafish)   85 85
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   12 12
Ciona_intestinalis_69   (Vase tunicate)   22 22
Drosophila_melanogaster_69_5   (Fruit fly)   21 21
Caenorhabditis_elegans_69_215   (Roundworm)   19 19

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   159 159
Homo_sapiens__(NCBI_version)   (Human)   117 117
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   63 63
Heliconius_numata__(Incomplete) 7 7
Loa_loa_v3.3_(Request)   (Eye worm)   14 14
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   11 11
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   10 10
STRING_v9.0.5_(STRING) 2030 2023
NCBI_2017_08_genome 25435 25386
Uniprot_2018_03_genome 28686 28546
PDB_chains_(SCOP_1.75)_(PDB) 40 40
NCBI_viral_sequences_(Viral) 22 22
UniProt__viral_sequences_(Viral) 42 42
TargetDB__(Targets) 69 69
Protein_Data_Bank_(all_PDB_sequenc) 460 460
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 1031 1031

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