Domain combinations for FnI-like domain superfamily in groups of genomes

• All genomes
• All eukaryote genomes (domain E)
• All bacterial genomes (domain B+A)
• All eubacterial genomes (domain B)
• All archaeal genomes (domain A)

Groups of genomes may be slower than individual genomes.

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Click on a genome below to view all domain combinations containing a FnI-like domain domain in that genome.

Complete genomes

Genome		Number	Proteins
Homo_sapiens_76_38	(Human)	383	107
Pan_troglodytes_76_2.1.4	(Chimpanzee)	68	29
Gorilla_gorilla_76_3.1	(Western gorilla)	125	45
Pongo_abelii_76_2	(Sumatran orangutan)	89	33
Nomascus_leucogenys_76_1.0	(Northern white-cheeked gibbon)	91	32
Papio_anubis_76	(Olive baboon)	98	30
Macaca_mulatta_76_1	(Rhesus monkey)	238	57
Callithrix_jacchus_76_3.2.1	(White-tufted-ear marmoset)	257	100
Otolemur_garnettii_76_3	(Small-eared galago)	79	28
Microcebus_murinus_76_1	(Gray mouse lemur)	66	27
Rattus_norvegicus_76_5.0	(Norway rat)	125	42
Mus_musculus_76_38	(House mouse)	258	68
Dipodomys_ordii_76_1	(Ord's kangaroo rat)	67	29
Ictidomys_tridecemlineatus_76_2	(Thirteen-lined ground squirrel)	87	32
Heterocephalus_glaber_v1.7-2	(Naked mole-rat)	73	31
Cavia_porcellus_76_3	(Domestic guinea pig)	96	37
Oryctolagus_cuniculus_76_2	(Rabbit)	106	38
Ochotona_princeps_76	(American pika)	63	25
Tupaia_belangeri_76	(Northern tree shrew)	42	23
Sus_scrofa_76_10.2	(Pig)	144	43
Bos_taurus_76_3.1	(Cattle)	154	37
Ovis_aries_76_3.1	(Sheep)	113	39
Vicugna_pacos_76_1	(Alpaca)	44	21
Tursiops_truncatus_76_1	(Bottlenose dolphin)	78	28
Mustela_putorius_furo_76_1.0	(Domestic ferret)	96	35
Ailuropoda_melanoleuca_76_1	(Giant panda)	110	42
Canis_familiaris_76_3.1	(Dog)	144	52
Felis_catus_76_6.2	(Domestic cat)	101	37
Equus_caballus_76_2	(Horse)	146	47
Myotis_lucifugus_76_2.0	(Little brown bat)	109	33
Pteropus_vampyrus_76_1	(Large flying fox)	80	32
Sorex_araneus_76_1	(European shrew)	36	20
Erinaceus_europaeus_76	(Western European hedgehog)	39	18
Procavia_capensis_76_1	(Cape rock hyrax)	60	31
Loxodonta_africana_76_3	(African savanna elephant)	110	42
Echinops_telfairi_76	(Small Madagascar hedgehog)	60	29
Dasypus_novemcinctus_76_2	(Nine-banded armadillo)	91	39
Choloepus_hoffmanni_76_1	(Hoffmann's two-fingered sloth)	39	17
Macropus_eugenii_76_1.0	(Tammar wallaby)	40	21
Sarcophilus_harrisii_76_7.0	(Tasmanian devil)	95	44
Monodelphis_domestica_76_5	(Gray short-tailed opossum)	82	35
Ornithorhynchus_anatinus_76_5	(Platypus)	85	41
Saccoglossus_kowalevskii_v3.0		266	96
Petromyzon_marinus_76_7.0	(Sea lamprey)	47	24
Meleagris_gallopavo_76_2	(Turkey)	65	39
Gallus_gallus_76_4	(Chicken)	82	30
Anas_platyrhynchos_76_1.0	(Mallard)	65	31
Taeniopygia_guttata_76_3.2.4	(Zebra finch)	68	34
Ficedula_albicollis_76_1.0	(Collared flycatcher)	76	37
Pelodiscus_sinensis_76_1.0	(Chinese soft-shelled turtle)	70	35
Anolis_carolinensis_76_2.0	(Green anole)	96	36
Xenopus_laevis_	(African clawed frog)	225	64
Xenopus_tropicalis_76_4.2	(Tropical clawed frog)	162	50
Latimeria_chalumnae_76_1	(Coelacanth)	114	49
Lepisosteus_oculatus_76	(Spotted gar)	174	58
Gadus_morhua_76_1	(Atlantic cod)	84	39
Tetraodon_nigroviridis_76_8	(Spotted green pufferfish)	190	59
Takifugu_rubripes_76_4	(Torafugu)	363	145
Gasterosteus_aculeatus_76_1	(Three-spined stickleback)	104	55
Oryzias_latipes_76_1	(Japanese medaka)	110	48
Xiphophorus_maculatus_76_4.4.2	(Southern platyfish)	106	39
Poecilia_formosa_76	(Amazon molly)	113	45
Oreochromis_niloticus_76_1.0	(Nile tilapia)	161	55
Astyanax_mexicanus_76	(Mexican tetra)	105	46
Danio_rerio_76_9	(Zebrafish)	195	80
Oikopleura_dioica		11	8
Ciona_savignyi_76_2.0	(Pacific transparent sea squirt)	117	45
Ciona_intestinalis_76	(Vase tunicate)	60	24
Strongylocentrotus_purpuratus_v3.1	(Purple sea urchin)	124	36
Adineta_vaga		24	5
Octopus_bimaculoides_280		555	83
Crassostrea_gigas_22	(Pacific oyster)	121	40
Lottia_gigantea_	(Owl limpet)	84	33
Helobdella_robusta_		7	5
Capitella_sp._I_		29	15
Danaus_plexippus_OGS1.0	(Monarch butterfly)	23	9
Heliconius_melpomene_	(Postman butterfly)	20	7
Bombyx_mori_	(Domestic silkworm)	16	10
Nasonia_vitripennis_	(Jewel wasp)	27	7
Apis_mellifera_38.2d_(Not_maintained)	(Honey bee)	42	13
Harpegnathos_saltator_v3.3	(Jerdon's jumping ant)	21	8
Linepithema_humile_v1.1	(Argentine ant)	21	8
Pogonomyrmex_barbatus_v1.2	(Red harvester ant)	19	9
Solenopsis_invicta_v.2.2.3	(Red fire ant)	19	10
Acromyrmex_echinatior_v3.8	(Panamanian leafcutter ant)	24	8
Atta_cephalotes_v1.1		22	10
Camponotus_floridanus_v3.3	(Florida carpenter ant)	24	8
Lucilia_cuprina	(Australian sheep blowfly)	23	9
Drosophila_grimshawi_1.3		26	13
Drosophila_willistoni_1.3		27	13
Drosophila_pseudoobscura_2.13		23	13
Drosophila_persimilis_1.3		25	11
Drosophila_suzukii		23	9
Drosophila_yakuba_1.3		25	13
Drosophila_simulans_1.3		20	11
Drosophila_sechellia_1.3		25	13
Drosophila_melanogaster_76_5	(Fruit fly)	51	24
Drosophila_erecta_1.3		27	13
Drosophila_ananassae_1.3		27	14
Drosophila_virilis_1.2		26	12
Drosophila_mojavensis_1.3		28	14
Megaselia_scalaris_22		7	5
Aedes_aegypti_55_(Not_maintained)	(Yellow fever mosquito)	23	12
Culex_pipiens_quinquefasciatus_	(Southern house mosquito)	29	15
Anopheles_darlingi_22	(American malaria mosquito)	17	12
Anopheles_gambiae_49_3j	(African malaria mosquito)	24	11
Tribolium_castaneum_3.0	(Red flour beetle)	29	12
Pediculus_humanus_corporis__(Early_assembly)	(Human body louse)	25	11
Acyrthosiphon_pisum_	(Pea aphid)	18	6
Rhodnius_prolixus_22		29	10
Daphnia_pulex_	(Common water flea)	30	18
Strigamia_maritima_22		34	17
Sarcoptes_scabiei		13	5
Tetranychus_urticae_	(Two-spotted spider mite)	31	14
Ixodes_scapularis__(Preliminary)	(Black-legged tick)	25	9
Pristionchus_pacificus_		9	4
Meloidogyne_incognita_	(Southern root-knot nematode)	5	3
Meloidogyne_hapla_		7	2
Onchocerca_volvulus_22		7	2
Brugia_malayi_WS250	(Agent of lymphatic filariasis)	7	2
Caenorhabditis_japonica_		7	2
Caenorhabditis_brenneri_		6	2
Caenorhabditis_remanei_		7	3
Caenorhabditis_elegans_76_235	(Roundworm)	31	8
Caenorhabditis_briggsae_2		6	2
Trichinella_spiralis_22		10	5
Hymenolepis_microstoma_		1	1
Echinococcus_multilocularis_		2	2
Echinococcus_granulosus_		2	2
Taenia_solium_	(Pork tapeworm)	3	3
Schistosoma_mansoni_		1	1
Mnemiopsis_leidyi	(Sea walnut)	39	21
Acropora_digitifera_v1.0		23	15
Nematostella_vectensis_1.0	(Starlet sea anemone)	18	12
Hydra_vulgaris		10	6
Amphimedon_queenslandica		7	4
Trichoplax_adhaerens_		30	4
Sorangium_cellulosum_'So_ce_56'		2	1

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Strains

Genome		Number	Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)	(Tropical clawed frog)	153	60
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)	(Fruit fly)	28	19
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)	(African malaria mosquito)	25	12
Ascaris_suum_Victoria/Ghent_	(Pig roundworm)	10	4
Caenorhabditis_elegans_WormBase_WS218__(WormBase)	(Roundworm)	24	6
Sorangium_cellulosum_So0157-2		4	1

Longest transcript per gene

Genome		Number	Proteins
Homo_sapiens_69_37	(Human)	84	35
Pan_troglodytes_69_2.1.4	(Chimpanzee)	68	29
Gorilla_gorilla_69_3.1	(Western gorilla)	102	38
Pongo_abelii_69_2	(Sumatran orangutan)	73	30
Nomascus_leucogenys_69_1.0	(Northern white-cheeked gibbon)	79	31
Macaca_mulatta_69_1	(Rhesus monkey)	73	26
Callithrix_jacchus_69_3.2.1	(White-tufted-ear marmoset)	91	36
Otolemur_garnettii_69_3	(Small-eared galago)	79	28
Microcebus_murinus_69_1	(Gray mouse lemur)	66	27
Rattus_norvegicus_69_3.4	(Norway rat)	90	34
Mus_musculus_69_38	(House mouse)	94	33
Dipodomys_ordii_69_1	(Ord's kangaroo rat)	67	29
Ictidomys_tridecemlineatus_69_2	(Thirteen-lined ground squirrel)	81	30
Cavia_porcellus_69_3	(Domestic guinea pig)	96	37
Oryctolagus_cuniculus_69_2	(Rabbit)	91	34
Ochotona_princeps_69	(American pika)	63	25
Tupaia_belangeri_69	(Northern tree shrew)	42	23
Sus_scrofa_69_10.2	(Pig)	84	29
Bos_taurus_69_3.1	(Cattle)	92	32
Vicugna_pacos_69_1	(Alpaca)	44	21
Tursiops_truncatus_69_1	(Bottlenose dolphin)	78	28
Mustela_putorius_furo_69_1.0	(Domestic ferret)	96	35
Ailuropoda_melanoleuca_69_1	(Giant panda)	94	37
Canis_familiaris_69_3.1	(Dog)	101	38
Felis_catus_69	(Domestic cat)	48	24
Equus_caballus_69_2	(Horse)	93	33
Myotis_lucifugus_69_2.0	(Little brown bat)	71	28
Pteropus_vampyrus_69_1	(Large flying fox)	80	32
Sorex_araneus_69_1	(European shrew)	36	20
Erinaceus_europaeus_69	(Western European hedgehog)	39	18
Procavia_capensis_69_1	(Cape rock hyrax)	60	31
Loxodonta_africana_69_3	(African savanna elephant)	87	31
Echinops_telfairi_69	(Small Madagascar hedgehog)	60	29
Dasypus_novemcinctus_69_2	(Nine-banded armadillo)	47	26
Choloepus_hoffmanni_69_1	(Hoffmann's two-fingered sloth)	39	17
Macropus_eugenii_69_1.0	(Tammar wallaby)	40	21
Sarcophilus_harrisii_69_7.0	(Tasmanian devil)	85	36
Monodelphis_domestica_69_5	(Gray short-tailed opossum)	80	33
Ornithorhynchus_anatinus_69_5	(Platypus)	75	39
Petromyzon_marinus_69_7.0	(Sea lamprey)	42	19
Meleagris_gallopavo_69_2	(Turkey)	58	32
Gallus_gallus_69_2	(Chicken)	62	30
Taeniopygia_guttata_69_3.2.4	(Zebra finch)	66	32
Pelodiscus_sinensis_69_1.0	(Chinese soft-shelled turtle)	65	32
Anolis_carolinensis_69_2.0	(Green anole)	92	36
Xenopus_tropicalis_69_4.2	(Tropical clawed frog)	102	39
Latimeria_chalumnae_69_1	(Coelacanth)	101	42
Gadus_morhua_69_1	(Atlantic cod)	80	35
Tetraodon_nigroviridis_69_8	(Spotted green pufferfish)	95	34
Takifugu_rubripes_69_4	(Torafugu)	97	36
Gasterosteus_aculeatus_69_1	(Three-spined stickleback)	87	40
Oryzias_latipes_69_1	(Japanese medaka)	91	35
Xiphophorus_maculatus_69_4.4.2	(Southern platyfish)	106	39
Oreochromis_niloticus_69_1.0	(Nile tilapia)	105	41
Danio_rerio_69_9	(Zebrafish)	120	51
Ciona_savignyi_69_2.0	(Pacific transparent sea squirt)	52	18
Ciona_intestinalis_69	(Vase tunicate)	49	21
Drosophila_melanogaster_69_5	(Fruit fly)	26	12
Caenorhabditis_elegans_69_215	(Roundworm)	7	2

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Others

Genome		Number	Proteins
Homo_sapiens_75_37_(old_version_GRC)	(Human)	363	114
Homo_sapiens__(NCBI_version)	(Human)	201	59
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)	(House mouse)	95	33
Heliconius_numata__(Incomplete)		1	1
Loa_loa_v3.3_(Request)	(Eye worm)	8	3
Wuchereria_bancrofti_v1.0_(Request)	(Agent of lymphatic filariasis)	6	3
Brugia_malayi_v1.0_(Duplicate)	(Agent of lymphatic filariasis)	2	1
Uniprot_2018_03_genome		27002	10540
NCBI_2017_08_genome		52215	16311
Protein_Data_Bank_(all_PDB_sequenc)		83	50
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ)		179	179
PDB_chains_(SCOP_1.75)_(PDB)		13	9
UniProt__viral_sequences_(Viral)		19	19
TargetDB__(Targets)		39	21
STRING_v9.0.5_(STRING)		2925	1172

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