SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for Inovirus (filamentous phage) major coat protein superfamily in groups of genomes

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Inovirus (filamentous phage) major coat protein domain in that genome.

Complete genomes
Genome     Number   Proteins
Dechlorosoma_suillum_PS 1 1
Ralstonia_solanacearum_CFBP2957 1 1
Acidovorax_ebreus_TPSY 1 1
Herminiimonas_arsenicoxydans 1 1
Collimonas_fungivorans_Ter331 1 1
Nitrosomonas_europaea_ATCC_19718 1 1
Vibrio_sp._Ex25 1 1
Methylomonas_methanica_MC09 1 1
Xylella_fastidiosa_M23 2 2
Xanthomonas_albilineans_GPE_PC73 1 1
Pseudomonas_aeruginosa_UCBPP-PA14 1 1

Strains
Genome     Number   Proteins
Ralstonia_pickettii_12J 3 3
Nitrosomonas_sp._AL212 2 2
Xylella_fastidiosa_Temecula1 2 2
Xanthomonas_campestris_pv._vesicatoria_str._85-10 1 1
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 1 1
Xanthomonas_campestris_pv._raphani_756C 1 1
Yersinia_enterocolitica_subsp._palearctica_105.5R(r) 2 2
Escherichia_coli_UM146 1 1
Pseudomonas_aeruginosa_SCV20265 1 1
Pseudomonas_aeruginosa_MTB-1 1 1
Pseudomonas_aeruginosa_PA7 1 1
Pseudomonas_aeruginosa_PAO1 1 1
Acinetobacter_baumannii__ATCC_19606 1 1

Others
Genome     Number   Proteins
NCBI_plasmid_sequences_(Plasmids) 1 1
PDB_chains_(SCOP_1.75)_(PDB) 9 9
NCBI_viral_sequences_(Viral) 10 10
STRING_v9.0.5_(STRING) 16 16
UniProt__viral_sequences_(Viral) 21 21
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 56 56
Protein_Data_Bank_(all_PDB_sequenc) 70 70
Uniprot_2018_03_genome 273 273
NCBI_2017_08_genome 2033 2033

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