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Domain combinations for Tropomyosin superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Tropomyosin domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   111 106
Pan_troglodytes_76_2.1.4   (Chimpanzee)   29 27
Gorilla_gorilla_76_3.1   (Western gorilla)   50 48
Pongo_abelii_76_2   (Sumatran orangutan)   23 21
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   28 27
Papio_anubis_76   (Olive baboon)   31 30
Macaca_mulatta_76_1   (Rhesus monkey)   61 59
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   70 65
Otolemur_garnettii_76_3   (Small-eared galago)   37 36
Microcebus_murinus_76_1   (Gray mouse lemur)   19 17
Rattus_norvegicus_76_5.0   (Norway rat)   45 44
Mus_musculus_76_38   (House mouse)   97 91
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   26 24
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   37 34
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   46 43
Cavia_porcellus_76_3   (Domestic guinea pig)   23 21
Oryctolagus_cuniculus_76_2   (Rabbit)   33 32
Ochotona_princeps_76   (American pika)   18 17
Tupaia_belangeri_76   (Northern tree shrew)   23 20
Sus_scrofa_76_10.2   (Pig)   37 36
Bos_taurus_76_3.1   (Cattle)   36 35
Ovis_aries_76_3.1   (Sheep)   30 29
Vicugna_pacos_76_1   (Alpaca)   19 18
Tursiops_truncatus_76_1   (Bottlenose dolphin)   18 17
Mustela_putorius_furo_76_1.0   (Domestic ferret)   25 24
Ailuropoda_melanoleuca_76_1   (Giant panda)   35 33
Canis_familiaris_76_3.1   (Dog)   39 37
Felis_catus_76_6.2   (Domestic cat)   31 30
Equus_caballus_76_2   (Horse)   49 47
Myotis_lucifugus_76_2.0   (Little brown bat)   25 22
Pteropus_vampyrus_76_1   (Large flying fox)   20 18
Sorex_araneus_76_1   (European shrew)   14 14
Erinaceus_europaeus_76   (Western European hedgehog)   15 14
Procavia_capensis_76_1   (Cape rock hyrax)   12 11
Loxodonta_africana_76_3   (African savanna elephant)   45 41
Echinops_telfairi_76   (Small Madagascar hedgehog)   24 23
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   54 45
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   12 10
Macropus_eugenii_76_1.0   (Tammar wallaby)   23 21
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   33 29
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   58 55
Ornithorhynchus_anatinus_76_5   (Platypus)   42 39
Saccoglossus_kowalevskii_v3.0 157 124
Petromyzon_marinus_76_7.0   (Sea lamprey)   18 18
Meleagris_gallopavo_76_2   (Turkey)   51 47
Gallus_gallus_76_4   (Chicken)   29 28
Anas_platyrhynchos_76_1.0   (Mallard)   24 22
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   25 25
Ficedula_albicollis_76_1.0   (Collared flycatcher)   30 29
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   33 32
Anolis_carolinensis_76_2.0   (Green anole)   37 36
Xenopus_laevis_   (African clawed frog)   72 70
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   53 50
Latimeria_chalumnae_76_1   (Coelacanth)   115 107
Lepisosteus_oculatus_76   (Spotted gar)   72 65
Gadus_morhua_76_1   (Atlantic cod)   36 34
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   63 61
Takifugu_rubripes_76_4   (Torafugu)   101 96
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   53 50
Oryzias_latipes_76_1   (Japanese medaka)   54 53
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   46 46
Poecilia_formosa_76   (Amazon molly)   51 46
Oreochromis_niloticus_76_1.0   (Nile tilapia)   81 69
Astyanax_mexicanus_76   (Mexican tetra)   44 40
Danio_rerio_76_9   (Zebrafish)   102 98
Oikopleura_dioica 26 25
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   49 44
Ciona_intestinalis_76   (Vase tunicate)   25 23
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   52 50
Adineta_vaga 51 47
Octopus_bimaculoides_280 84 64
Crassostrea_gigas_22   (Pacific oyster)   37 31
Lottia_gigantea_   (Owl limpet)   26 25
Helobdella_robusta_ 17 17
Capitella_sp._I_ 18 16
Danaus_plexippus_OGS1.0   (Monarch butterfly)   17 15
Heliconius_melpomene_   (Postman butterfly)   15 15
Bombyx_mori_   (Domestic silkworm)   19 18
Nasonia_vitripennis_   (Jewel wasp)   15 11
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   56 46
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   21 18
Linepithema_humile_v1.1   (Argentine ant)   14 11
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   20 17
Solenopsis_invicta_v.2.2.3   (Red fire ant)   18 14
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   21 14
Atta_cephalotes_v1.1 21 18
Camponotus_floridanus_v3.3   (Florida carpenter ant)   24 19
Lucilia_cuprina   (Australian sheep blowfly)   18 13
Drosophila_grimshawi_1.3 12 11
Drosophila_willistoni_1.3 13 12
Drosophila_pseudoobscura_2.13 15 12
Drosophila_persimilis_1.3 15 14
Drosophila_suzukii 22 19
Drosophila_yakuba_1.3 15 13
Drosophila_simulans_1.3 10 8
Drosophila_sechellia_1.3 14 12
Drosophila_melanogaster_76_5   (Fruit fly)   44 43
Drosophila_erecta_1.3 13 11
Drosophila_ananassae_1.3 15 13
Drosophila_virilis_1.2 18 14
Drosophila_mojavensis_1.3 15 13
Megaselia_scalaris_22 8 7
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   30 29
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   32 28
Anopheles_darlingi_22   (American malaria mosquito)   11 11
Anopheles_gambiae_49_3j   (African malaria mosquito)   18 16
Tribolium_castaneum_3.0   (Red flour beetle)   21 18
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   11 10
Acyrthosiphon_pisum_   (Pea aphid)   13 13
Rhodnius_prolixus_22 15 14
Daphnia_pulex_   (Common water flea)   14 13
Strigamia_maritima_22 17 14
Sarcoptes_scabiei 9 9
Tetranychus_urticae_   (Two-spotted spider mite)   17 16
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   10 10
Pristionchus_pacificus_ 11 9
Meloidogyne_incognita_   (Southern root-knot nematode)   13 13
Meloidogyne_hapla_ 4 4
Onchocerca_volvulus_22 18 13
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   22 19
Caenorhabditis_japonica_ 11 9
Caenorhabditis_brenneri_ 18 15
Caenorhabditis_remanei_ 21 17
Caenorhabditis_elegans_76_235   (Roundworm)   40 34
Caenorhabditis_briggsae_2 29 24
Trichinella_spiralis_22 8 8
Hymenolepis_microstoma_ 23 19
Echinococcus_multilocularis_ 15 15
Echinococcus_granulosus_ 15 15
Taenia_solium_   (Pork tapeworm)   15 15
Schistosoma_mansoni_ 41 39
Mnemiopsis_leidyi   (Sea walnut)   39 35
Thelohanellus_kitauei 8 8
Acropora_digitifera_v1.0 56 44
Nematostella_vectensis_1.0   (Starlet sea anemone)   52 50
Hydra_vulgaris 29 22
Amphimedon_queenslandica 17 17
Trichoplax_adhaerens_ 9 9
Proterospongia_sp._ATCC_50818_ 26 23
Monosiga_brevicollis_ 17 17
Sphaeroforma_arctica_JP610_ 22 17
Capsaspora_owczarzaki_ATCC_30864_ 6 6
Conidiobolus_coronatus_NRRL28638_v1.0 5 5
Mortierella_verticillata_NRRL_6337_ 13 13
Phycomyces_blakesleeanus_ 10 10
Rhizopus_oryzae_RA_99-880_ 13 12
Mucor_circinelloides_ 7 7
Rhizomucor_miehei_CAU432_ 9 8
Malassezia_globosa_CBS_7966_ 6 6
Sporisorium_reilianum_22 6 4
Ustilago_maydis_ 7 6
Mixia_osmundae_IAM_14324_v1.0 4 4
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 3 3
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 6 6
Melampsora_laricis-populina_ 4 4
Rhodotorula_graminis_WP1_v1.0 7 6
Sporobolomyces_roseus_IAM_13481_ 5 4
Microbotryum_violaceum_22 7 6
Wallemia_sebi_v1.0 3 3
Sphaerobolus_stellatus_v1.0 9 9
Piloderma_croceum_F_1598_v1.0 11 11
Serpula_lacrymans_var._lacrymans_S7.9_ 3 3
Coniophora_puteana 10 9
Hydnomerulius_pinastri_v2.0 6 6
Paxillus_rubicundulus_Ve08.2h10_v1.0 6 6
Pisolithus_microcarpus_441_v1.0 6 5
Pisolithus_tinctorius_Marx_270_v1.0 6 6
Scleroderma_citrinum_Foug_A_v1.0 10 10
Coprinopsis_cinerea_okayama7_130_v3 18 18
Pleurotus_ostreatus_   (Oyster mushroom)   3 3
Amanita_thiersii_Skay4041_v1.0 6 6
Amanita_muscaria_Koide_v1.0   (Fly agaric)   6 6
Galerina_marginata_v1.0 9 9
Hebeloma_cylindrosporum_h7_v2.0 9 9
Laccaria_bicolor_S238N-H82_ 7 7
Agaricus_bisporus_var._bisporus_ 7 6
Schizophyllum_commune_ 26 23
Stereum_hirsutum_FP-91666_SS1__v1.0 5 5
Heterobasidion_annosum_ 10 9
Gloeophyllum_trabeumv1.0 12 10
Punctularia_strigosozonata_v1.0 12 11
Sebacina_vermifera_MAFF_305830_v1.0 10 8
Fomitiporia_mediterranea_v1.0 4 4
Tulasnella_calospora_AL13/4D_v1.0 10 8
Postia_placenta_ 10 8
Wolfiporia_cocos_MD-104_SS10__v1.0 6 6
Fomitopsis_pinicolav1.0 15 14
Fomitopsis_pinicola_FP-58527_SS1_v3.0 16 15
Phanerochaete_chrysosporium_RP-78_2.1 10 10
Dichomitus_squalens 3 3
Trametes_versicolor_v1.0 7 7
Tremella_mesenterica_   (Witches' butter)   6 6
Daldinia_eschscholzii_EC12_v1.0 7 7
Apiospora_montagnei_NRRL_25634_v1.0 8 8
Magnaporthe_poae_ATCC_64411_22 10 10
Magnaporthe_grisea_70-15_ 11 10
Podospora_anserina_ 10 10
Sporotrichum_thermophile_ATCC_42464_ 6 6
Thielavia_terrestris_NRRL_8126_ 7 7
Chaetomium_globosum_CBS_148.51_ 4 4
Neurospora_tetrasperma_ 6 6
Neurospora_discreta_FGSC_8579_ 6 6
Neurospora_crassa_OR74A_ 11 10
Cryphonectria_parasitica_   (Chestnut blight fungus)   8 8
Verticillium_albo-atrum_VaMs.102_ 5 5
Verticillium_dahliae_VdLs.17_ 6 6
Acremonium_alcalophilumv_1.0 7 6
Glomerella_graminicola_22 7 7
Fusarium_graminearum_ 10 8
Nectria_haematococca_mpVI_ 7 6
Fusarium_oxysporum_f._sp._lycopersici_4286_ 9 9
Fusarium_verticillioides_7600_ 10 10
Trichoderma_asperellum_CBS_433.97_v1.0 3 3
Trichoderma_atroviride_ 2 2
Trichoderma_citrinoviride_v1.0 4 4
Trichoderma_reesei_1.2 6 6
Trichoderma_virens_Gv29-8_ 4 4
Trichoderma_longibrachiatum_ATCC_18648_v1.0 2 2
Trichoderma_harzianum_CBS_226.95_v1.0 5 5
Amorphotheca_resinae_v1.0   (Creosote fungus)   6 6
Botrytis_cinerea_B05.10_ 6 6
Sclerotinia_sclerotiorum_ 6 6
Blumeria_graminis_22 6 6
Didymella_exigua_CBS_183.55_v1.0 6 6
Leptosphaeria_maculans_22 9 8
Setosphaeria_turcica_v1.0 7 7
Cochliobolus_miyabeanus_ATCC_44560_v1.0 5 5
Cochliobolus_victoriae_FI3_v1.0 8 5
Cochliobolus_carbonum_26-R-13_v1.0 8 7
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   5 4
Alternaria_brassicicola_ 12 9
Cochliobolus_lunatus_m118_v2.0 5 5
Pyrenophora_teres_f._teres_22 7 5
Pyrenophora_tritici-repentis_ 9 7
Stagonospora_nodorum_ 12 10
Mycosphaerella_graminicola_IPO323_ 7 7
Zasmidium_cellare_ATCC_36951_v1.0 13 12
Dothistroma_septosporum 5 5
Septoria_musiva_v1.0 5 5
Mycosphaerella_fijiensis_CIRAD86_ 4 4
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 10 10
Paracoccidioides_brasiliensis_Pb18_ 6 6
Coccidioides_posadasii_RMSCC_3488_ 2 2
Coccidioides_immitis_RS_ 4 4
Ajellomyces_dermatitidis_SLH14081_ 3 3
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 6 6
Microsporum_canis_CBS_113480_ 5 5
Trichophyton_equinum_CBS_127.97_ 8 8
Trichophyton_verrucosum_HKI_0517_ 8 8
Arthroderma_benhamiae_CBS_112371_ 11 11
Trichophyton_tonsurans_CBS_112818_ 9 9
Trichophyton_rubrum_CBS_118892_ 6 6
Uncinocarpus_reesii_1704_ 6 6
Aspergillus_zonatus_v1.0 3 3
Penicillium_chrysogenum_Wisconsin_54-1255_ 4 4
Penicillium_chrysogenum_v1.0 2 2
Aspergillus_acidus_v1.0 8 7
Aspergillus_fumigatus_Af293 8 7
Aspergillus_brasiliensis_v1.0 3 3
Aspergillus_nidulans_FGSC_A4_ 6 6
Aspergillus_sydowii_v1.0 9 8
Aspergillus_versicolor_v1.0 12 12
Aspergillus_glaucus 3 3
Aspergillus_carbonarius_ITEM_5010_ 5 5
Neosartorya_fischeri_NRRL_181_ 8 8
Aspergillus_terreus_NIH2624_ 12 12
Aspergillus_tubingensis_v1.0 7 6
Aspergillus_wentii_v1.0 8 8
Aspergillus_oryzae_RIB40_ 6 6
Aspergillus_niger_22 9 8
Aspergillus_niger_ATCC_1015_ 6 6
Aspergillus_flavus_NRRL3357_ 6 6
Aspergillus_clavatus_NRRL_1_ 5 5
Penicillium_marneffei_ATCC_18224_ 6 5
Tuber_melanosporum_Mel28_22 5 4
Tuber_melanosporum_Vittad_   (Perigord truffle)   7 6
Hansenula_polymorpha_v2.0 2 2
Dekkera_bruxellensis_CBS_2499_v2.0 1 1
Pichia_membranifaciensv1.0 1 1
Candida_tanzawaensis_NRRL_Y-17324__v1.0 3 3
Candida_dubliniensis_CD36_ 6 5
Candida_tropicalis_MYA-3404_ 5 3
Candida_parapsilosis_ 3 3
Candida_albicans_SC5314 5 5
Lodderomyces_elongisporus_NRRL_YB-4239_ 4 4
Babjeviella_inositovora_NRRL_Y-12698_v1.0 2 2
Pichia_stipitis_CBS_6054_ 2 2
Candida_guilliermondii_ATCC_6260_ 3 3
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 3 3
Debaromyces_hansenii 5 4
Wickerhamomyces_anomalus 2 2
Pichia_pastoris_GS115_ 4 4
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 3 3
Yarrowia_lipolytica_CLIB122 7 6
Candida_lusitaniae_ATCC_42720_ 5 5
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 1 1
Vanderwaltozyma_polyspora_DSM_70294_ 8 4
Candida_glabrata_CBS138 7 5
Kluyveromyces_thermotolerans_CBS_6340 8 7
Lachancea_kluyveri_ 3 3
Kluyveromyces_waltii 4 4
Ashbya_gossypii_ATCC_10895_ 3 3
Zygosaccharomyces_rouxii_ 7 7
Saccharomyces_mikatae_MIT 6 5
Saccharomyces_paradoxus_MIT 6 6
Saccharomyces_cerevisiae_76   (Baker's yeast)   6 5
Saccharomyces_bayanus_MIT 8 7
Kluyveromyces_lactis 4 4
Schizosaccharomyces_cryophilus_OY26_22 5 3
Schizosaccharomyces_octosporus_yFS286_ 11 10
Schizosaccharomyces_japonicus_yFS275_ 6 5
Schizosaccharomyces_pombe   (Fission yeast)   11 10
Catenaria_anguillulae_PL171_v1.0 20 18
Allomyces_macrogynus_ATCC_38327_ 16 15
Spizellomyces_punctatus_DAOM_BR117_ 19 18
Dictyostelium_discoideum 4 4
Dictyostelium_purpureum_ 4 4
Entamoeba_dispar_1.2 4 3
Entamoeba_invadens_1.2 23 18
Entamoeba_histolytica_1 6 4
Selaginella_moellendorffii_ 15 13
Pinus_taeda   (Loblolly pine)   4 3
Picea_abies   (Norway spruce)   6 4
Eucalyptus_grandis_v201   (Rose gum)   43 40
Theobroma_cacao_B97-61/B2_v1   (Cacao)   17 15
Gossypium_raimondii_v221 127 107
Citrus_clementina_v165 34 31
Citrus_sinensis_v154   (Sweet orange)   70 56
Thellungiella_halophila_v173 33 28
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   39 34
Capsella_rubella_v183 37 31
Arabidopsis_lyrata_   (Lyrate rockcress)   17 17
Arabidopsis_thaliana_10   (Thale cress)   36 35
Carica_papaya_   (Papaya)   12 11
Medicago_truncatula_   (Barrel medic)   91 75
Phaseolus_vulgaris_v186   (French bean)   40 37
Glycine_max_v109   (Soybean)   64 59
Cucumis_sativus_v122   (Cucumber)   24 23
Fragaria_vesca_   (Wild strawberry)   26 24
Malus_domestica_v196   (Apple)   36 34
Prunus_persica_v139   (Peach)   22 20
Linum_usitatissimum_v200   (Flax)   42 37
Manihot_esculenta_v147   (Cassava)   25 22
Populus_trichocarpa_v156   (Black cottonwood)   36 29
Vitis_vinifera_   (Wine grape)   6 6
Mimulus_guttatus_v140   (Spotted monkey flower)   9 9
Solanum_lycopersicum_v.2.3   (Tomato)   22 18
Solanum_tuberosum_   (Potato)   30 28
Actinidia_chinensis_Hongyang_ 21 19
Aquilegia_coerulea_v195 55 51
Triticum_urartu_22 19 17
Triticum_aestivum_22   (Bread wheat)   50 44
Aegilops_tauschii_22 17 14
Brachypodium_distachyon_   (Stiff brome)   21 19
Oryza_barthii_22   (African wild rice)   26 21
Oryza_meridionalis_22 27 25
Oryza_glumaepatula_22 31 23
Oryza_glaberrima   (African rice)   21 17
Oryza_punctata_22 34 29
Oryza_nivara_22 25 21
Oryza_brachyantha_22   (Malo sina)   24 23
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   42 39
Oryza_sativa_v193   (Rice)   39 36
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   11 11
Panicum_virgatum_v202   (Switchgrass)   34 26
Setaria_italica_v164   (Foxtail millet)   21 18
Zea_mays_subsp._mays_   (Maize)   23 23
Zea_mays_v181   (Maize)   28 27
Sorghum_bicolor_   (Sorghum)   16 15
Musa_balbisiana   (Balbis banana)   25 23
Musa_acuminata_22   (Wild Malaysian banana)   18 15
Amborella_trichopoda_22 11 9
Physcomitrella_patens 13 11
Coccomyxa_subellipsoidea_sp._C-169_v2 14 13
Asterochloris_sp._Cgr/DA1pho_v1.0 10 9
Chlorella_variabilis_sp._NC64A_ 15 11
Chlorella_vulgaris_ 13 12
Volvox_carteri_f._nagariensis_ 28 25
Volvox_carteri_v199 28 25
Chlamydomonas_reinhardtii_4.0 23 18
Ostreococcus_sp._RCC809_ 5 4
Ostreococcus_lucimarinus_CCE9901_ 12 9
Ostreococcus_tauri_ 8 8
Bathycoccus_prasinos_ 3 3
Micromonas_sp._RCC299_ 8 8
Micromonas_pusilla_CCMP1545_v3.0 4 4
Cyanidioschyzon_merolae_strain_10D_22 3 3
Cyanidioschyzon_merolae 3 3
Porphyridium_purpureum_02_2012 4 4
Thecamonas_trahens_ATCC_50062_ 51 44
Bigelowiella_natans_CCMP2755_22 6 6
Giardia_lamblia_2.3 13 13
Cyanophora_paradoxa_ 17 17
Leishmania_mexicana_2.4 16 11
Leishmania_major_strain_Friedlin_ 13 9
Leishmania_infantum_JPCM5_2.4 12 5
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 19 12
Trypanosoma_vivax_ 14 11
Trypanosoma_cruzi_strain_CL_Brener 4 4
Trypanosoma_congolense_2.4 7 7
Trypanosoma_brucei_gambiense_v4.1 10 6
Trypanosoma_brucei_TREU927_v4.1 10 7
Ectocarpus_siliculosus 8 8
Aureococcus_anophagefferens_ 6 6
Albugo_laibachii_22 4 4
Pythium_iwayamai_DAOM_BR242034_22 3 3
Pythium_arrhenomanes_ATCC_12531_22 5 5
Pythium_ultimum_v1.7-2 4 4
Pythium_aphanidermatum_DAOM_BR444_22 10 8
Pythium_irregulare_DAOM_BR486_22 5 5
Pythium_vexans_DAOM_BR484_22 5 5
Phytophthora_ramorum_1.1   (Sudden oak death agent)   9 9
Phytophthora_sojae_1.1 15 15
Phytophthora_infestans_T30-4_ 4 3
Phytophthora_capsici_ 10 10
Hyaloperonospora_arabidopsidis_22 2 2
Phaeodactylum_tricornutumCCAP_1055/1 1 1
Fragilariopsis_cylindrus 6 6
Thalassiosira_pseudonana_CCMP1335 4 4
Perkinsus_marinus_ATCC_50983_ 31 28
Paramecium_tetraurelia_ 60 49
Tetrahymena_thermophila_SB210_1_ 18 17
Ichthyophthirius_multifiliis_strain_G5_ 11 7
Cryptosporidium_hominis 2 2
Cryptosporidium_parvum_Iowa_II 2 2
Neospora_caninum 2 2
Toxoplasma_gondii_VEG 2 2
Toxoplasma_gondii_ME49 2 2
Toxoplasma_gondii_GT1 2 2
Babesia_bovis_T2Bo_ 12 10
Theileria_parva__ 7 5
Theileria_annulata 3 3
Plasmodium_falciparum_3D7_ 9 9
Plasmodium_vivax_SaI-1_7.0 2 2
Plasmodium_knowlesi_strain_H_ 4 4
Plasmodium_yoelii_ssp._yoelii_1_ 1 1
Plasmodium_chabaudi_ 1 1
Plasmodium_berghei_ANKA_ 4 3
Symbiodinium_minutum_clade_B1_v1.2 40 39
Naegleria_gruberi_ 8 7
Trichomonas_vaginalis_ 69 58
Guillardia_theta_CCMP2712_v1.0_ 28 27
Emiliania_huxleyi_CCMP1516_ 1 1
Thermobaculum_terrenum_ATCC_BAA-798 3 2
Leptolyngbya_sp._PCC_7376 1 1
Pseudanabaena_sp._PCC_7367 2 2
Acaryochloris_marina_MBIC11017 1 1
Synechocystis_sp._PCC_6803 1 1
Thermosynechococcus_sp._NK55 2 2
Thermosynechococcus_elongatus_BP-1 4 4
Synechococcus_sp._PCC_6312 3 3
Synechococcus_elongatus_PCC_7942 1 1
Prochlorococcus_marinus_str._MIT_9515 1 1
Microcoleus_sp._PCC_7113 3 3
Trichodesmium_erythraeum_IMS101 10 7
Geitlerinema_sp._PCC_7407 2 2
Cyanothece_sp._PCC_8802 2 2
Gloeocapsa_sp._PCC_7428 3 3
Halothece_sp._PCC_7418 8 7
Microcystis_aeruginosa_NIES-843 6 6
Gloeobacter_violaceus_PCC_7421 2 2
Rivularia_sp._PCC_7116 3 3
Calothrix_sp._PCC_7507 5 5
Anabaena_variabilis_ATCC_29413 4 3
'Nostoc_azollae'_0708 2 2
Nostoc_punctiforme_PCC_73102 3 3
Nostoc_sp._PCC_7120 4 3
Nostoc_sp._PCC_7524 1 1
Aster_yellows_witches'-broom_phytoplasma_AYWB 3 3
Ureaplasma_parvum_serovar_3_str._ATCC_27815 1 1
Mycoplasma_leachii_99/014/6 1 1
Mycoplasma_mycoides_subsp._capri_LC_str._95010 6 6
Mycoplasma_capricolum_subsp._capricolum_ATCC_27343 3 3
Mycoplasma_mobile_163K 1 1
Mycoplasma_pneumoniae_309 1 1
Conexibacter_woesei_DSM_14684 2 2
Eggerthella_lenta_DSM_2243 1 1
Slackia_heliotrinireducens_DSM_20476 2 2
Atopobium_parvulum_DSM_20469 1 1
Coriobacterium_glomerans_PW2 1 1
Rubrobacter_xylanophilus_DSM_9941 1 1
Ilumatobacter_coccineus 1 1
Thermobispora_bispora_DSM_43833 1 1
Modestobacter_marinus 1 1
Stackebrandtia_nassauensis_DSM_44728 1 1
Frankia_symbiont_of_Datisca_glomerata 1 1
Thermobifida_fusca_YX 1 1
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 1 1
Thermomonospora_curvata_DSM_43183 2 2
Streptosporangium_roseum_DSM_43021 1 1
Saccharomonospora_viridis_DSM_43017 1 1
Pseudonocardia_dioxanivorans_CB1190 1 1
Amycolatopsis_mediterranei_U32 2 2
Nocardioides_sp._JS614 2 2
Propionibacterium_propionicum_F0230a 1 1
Salinispora_arenicola_CNS-205 1 1
Salinispora_tropica_CNB-440 1 1
Micromonospora_sp._L5 1 1
Micromonospora_aurantiaca_ATCC_27029 1 1
Actinoplanes_sp._SE50/110 1 1
Nocardia_farcinica_IFM_10152 1 1
Amycolicicoccus_subflavus_DQS3-9A1 1 1
Mycobacterium_vanbaalenii_PYR-1 1 1
Mycobacterium_gilvum_PYR-GCK 1 1
Mycobacterium_chubuense_NBB4 1 1
Corynebacterium_resistens_DSM_45100 2 2
Corynebacterium_kroppenstedtii_DSM_44385 1 1
Corynebacterium_ulcerans_0102 2 2
Corynebacterium_pseudotuberculosis_316 1 1
Kytococcus_sedentarius_DSM_20547 1 1
Beutenbergia_cavernae_DSM_12333 1 1
Microbacterium_testaceum_StLB037 1 1
Jonesia_denitrificans_DSM_20603 1 1
Isoptericola_variabilis_225 3 2
Xylanimonas_cellulosilytica_DSM_15894 1 1
Cellulomonas_fimi_ATCC_484 1 1
[Cellvibrio]_gilvus_ATCC_13127 1 1
Arthrobacter_phenanthrenivorans_Sphe3 3 2
Arthrobacter_chlorophenolicus_A6 1 1
Arthrobacter_aurescens_TC1 1 1
Arthrobacter_arilaitensis_Re117 1 1
Arthrobacter_sp._Rue61a 1 1
Arthrobacter_sp._FB24 2 2
Gardnerella_vaginalis_409-05 2 2
Bifidobacterium_dentium_Bd1 1 1
Arcanobacterium_haemolyticum_DSM_20595 1 1
Mobiluncus_curtisii_ATCC_43063 1 1
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 1 1
Thermomicrobium_roseum_DSM_5159 3 3
Herpetosiphon_aurantiacus_DSM_785 1 1
Chloroflexus_aggregans_DSM_9485 3 2
Deinococcus_deserti_VCD115 1 1
Deinococcus_maricopensis_DSM_21211 1 1
Deinococcus_geothermalis_DSM_11300 1 1
Deinococcus_proteolyticus_MRP 1 1
Oceanithermus_profundus_DSM_14977 1 1
Marinithermus_hydrothermalis_DSM_14884 1 1
Meiothermus_silvanus_DSM_9946 1 1
Thermus_sp._CCB_US3_UF1 2 2
Thermus_thermophilus_HB27 1 1
Anaerococcus_prevotii_DSM_20548 1 1
Finegoldia_magna_ATCC_29328 1 1
Veillonella_parvula_DSM_2008 1 1
Megasphaera_elsdenii_DSM_20460 1 1
Acidaminococcus_intestini_RyC-MR95 1 1
Acidaminococcus_fermentans_DSM_20731 2 2
Selenomonas_sputigena_ATCC_35185 1 1
Erysipelothrix_rhusiopathiae_str._Fujisawa 2 2
Natranaerobius_thermophilus_JW/NM-WN-LF 3 3
Clostridium_clariflavum_DSM_19732 4 4
Clostridium_cellulolyticum_H10 2 2
Clostridium_thermocellum_ATCC_27405 3 3
Ruminococcus_sp. 2 2
Ruminococcus_bromii 2 2
Ruminococcus_albus_7 4 4
Thermaerobacter_marianensis_DSM_12885 1 1
Oscillibacter_valericigenes_Sjm18-20 1 1
Thermincola_potens_JR 5 5
Pelotomaculum_thermopropionicum_SI 1 1
Dehalobacter_sp._DCA 1 1
Dehalobacter_sp._CF 1 1
Syntrophobotulus_glycolicus_DSM_8271 1 1
Desulfitobacterium_hafniense_Y51 4 4
Desulfotomaculum_reducens_MI-1 2 2
Desulfotomaculum_acetoxidans_DSM_771 2 2
Desulfotomaculum_kuznetsovii_DSM_6115 5 5
Desulfotomaculum_carboxydivorans_CO-1-SRB 3 3
Desulfotomaculum_ruminis_DSM_2154 3 3
Acetobacterium_woodii_DSM_1030 2 2
Eubacterium_eligens_ATCC_27750 2 2
Eubacterium_limosum_KIST612 1 1
Clostridium_difficile_630 4 3
Clostridium_phytofermentans_ISDg 10 2
[Ruminococcus]_obeum 3 1
[Ruminococcus]_torques 1 1
Roseburia_hominis_A2-183 2 2
Roseburia_intestinalis 2 2
Butyrivibrio_proteoclasticus_B316 2 2
Butyrivibrio_fibrisolvens 1 1
Syntrophothermus_lipocalidus_DSM_12680 2 2
Syntrophomonas_wolfei_subsp._wolfei_str._Goettingen 2 2
Heliobacterium_modesticaldum_Ice1 4 4
Alkaliphilus_oremlandii_OhILAs 1 1
Alkaliphilus_metalliredigens_QYMF 2 2
Clostridium_sp._BNL1100 2 2
Clostridium_novyi_NT 2 1
Clostridium_kluyveri_DSM_555 3 3
Clostridium_beijerinckii_NCIMB_8052 1 1
Clostridium_perfringens_ATCC_13124 1 1
Clostridium_cellulovorans_743B 2 2
Clostridium_botulinum_A_str._ATCC_3502 2 2
Clostridium_acetobutylicum_ATCC_824 2 2
Mahella_australiensis_50-1_BON 3 3
Thermosediminibacter_oceani_DSM_16646 2 2
Caldicellulosiruptor_obsidiansis_OB47 4 4
Caldicellulosiruptor_kronotskyensis_2002 5 5
Caldicellulosiruptor_hydrothermalis_108 5 5
Caldicellulosiruptor_owensensis_OL 5 5
Caldicellulosiruptor_lactoaceticus_6A 7 7
Caldicellulosiruptor_kristjanssonii_177R1B 7 7
Caldicellulosiruptor_saccharolyticus_DSM_8903 8 8
Caldicellulosiruptor_bescii_DSM_6725 5 5
Thermoanaerobacterium_xylanolyticum_LX-11 3 3
Thermoanaerobacterium_thermosaccharolyticum_DSM_571 3 3
Tepidanaerobacter_acetatoxydans_Re1 2 2
Thermoanaerobacter_tengcongensis_MB4 2 2
Carboxydothermus_hydrogenoformans_Z-2901 3 3
Thermoanaerobacter_pseudethanolicus_ATCC_33223 3 3
Thermoanaerobacter_sp._X514 2 2
Thermoanaerobacter_italicus_Ab9 1 1
Thermoanaerobacter_wiegelii_Rt8.B1 2 2
Thermoanaerobacter_brockii_subsp._finnii_Ako-1 2 2
Acetohalobium_arabaticum_DSM_5501 3 2
Halothermothrix_orenii_H_168 2 2
Halanaerobium_hydrogeniformans 4 4
Halanaerobium_praevalens_DSM_2228 2 2
Carnobacterium_sp._17-4 1 1
Aerococcus_urinae_ACS-120-V-Col10a 1 1
Tetragenococcus_halophilus_NBRC_12172 1 1
Enterococcus_hirae_ATCC_9790 2 2
Enterococcus_faecium_Aus0004 5 5
Enterococcus_faecalis_62 2 2
Leuconostoc_sp._C2 1 1
Leuconostoc_kimchii_IMSNU_11154 2 2
Leuconostoc_citreum_KM20 1 1
Leuconostoc_gasicomitatum_LMG_18811 2 2
Lactobacillus_kefiranofaciens_ZW3 2 1
Lactobacillus_crispatus_ST1 1 1
Lactobacillus_rhamnosus_Lc_705 2 2
Lactobacillus_johnsonii_FI9785 3 2
Lactobacillus_sanfranciscensis_TMW_1.1304 1 1
Lactobacillus_salivarius_CECT_5713 2 2
Lactobacillus_fermentum_IFO_3956 2 2
Lactobacillus_reuteri_DSM_20016 3 3
Lactobacillus_gasseri_ATCC_33323 3 3
Lactobacillus_brevis_ATCC_367 1 1
Lactobacillus_acidophilus_30SC 1 1
Pediococcus_pentosaceus_ATCC_25745 2 2
Streptococcus_gallolyticus_UCN34 1 1
Streptococcus_equi_subsp._equi_4047 1 1
Streptococcus_uberis_0140J 1 1
Streptococcus_parauberis_KCTC_11537 2 2
Streptococcus_pneumoniae_P1031 1 1
Streptococcus_sanguinis_SK36 1 1
Exiguobacterium_sp._MH3 1 1
Kyrpidia_tusciae_DSM_2912 7 6
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_DSM_446 1 1
Brevibacillus_brevis_NBRC_100599 2 2
Paenibacillus_polymyxa_M1 1 1
Bacillus_selenitireducens_MLS10 2 2
Geobacillus_thermoglucosidasius_C56-YS93 2 2
Oceanobacillus_iheyensis_HTE831 1 1
Anoxybacillus_flavithermus_WK1 3 3
Geobacillus_thermoleovorans_CCB_US3_UF5 7 7
Geobacillus_kaustophilus_HTA426 9 8
Geobacillus_sp._GHH01 5 5
Geobacillus_sp._WCH70 4 4
Geobacillus_thermodenitrificans_NG80-2 1 1
Bacillus_sp._JS 1 1
Bacillus_sp._1NLA3E 1 1
Bacillus_amyloliquefaciens_FZB42 2 2
Bacillus_atrophaeus_1942 1 1
Bacillus_subtilis_subsp._subtilis_str._168 1 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 3 3
Bacillus_halodurans_C-125 2 2
Bacillus_weihenstephanensis_KBAB4 1 1
Bacillus_cereus_03BB102 1 1
Bacillus_pseudofirmus_OF4 1 1
Bacillus_clausii_KSM-K16 4 4
Bacillus_cellulosilyticus_DSM_2522 3 3
Bacillus_pumilus_SAFR-032 1 1
Bacillus_megaterium_DSM_319 2 2
Bacillus_coagulans_2-6 3 3
Macrococcus_caseolyticus_JCSC5402 1 1
Staphylococcus_lugdunensis_HKU09-01 1 1
Staphylococcus_carnosus_subsp._carnosus_TM300 1 1
Staphylococcus_aureus_subsp._aureus_JH1 1 1
Staphylococcus_aureus 1 1
Gemmatimonas_aurantiaca_T-27 2 2
Melioribacter_roseus_P3M 1 1
Pelodictyon_phaeoclathratiforme_BU-1 1 1
Chlorobium_luteolum_DSM_273 1 1
Chlorobium_chlorochromatii_CaD3 1 1
Chlorobium_phaeobacteroides_DSM_266 1 1
Chlorobium_limicola_DSM_245 1 1
Chloroherpeton_thalassium_ATCC_35110 2 2
Haliscomenobacter_hydrossis_DSM_1100 2 2
Niastella_koreensis_GR20-10 1 1
Chitinophaga_pinensis_DSM_2588 2 2
Salinibacter_ruber_M8 2 2
Rhodothermus_marinus_DSM_4252 4 3
Flexibacter_litoralis_DSM_6794 1 1
Cyclobacterium_marinum_DSM_745 1 1
Marivirga_tractuosa_DSM_4126 2 2
Dyadobacter_fermentans_DSM_18053 1 1
Cytophaga_hutchinsonii_ATCC_33406 1 1
Spirosoma_linguale_DSM_74 1 1
Runella_slithyformis_DSM_19594 2 2
Prevotella_ruminicola_23 1 1
Bacteroides_salanitronis_DSM_18170 1 1
Bacteroides_thetaiotaomicron_VPI-5482 1 1
Bacteroides_fragilis_YCH46 1 1
Pedobacter_saltans_DSM_12145 1 1
Pedobacter_heparinus_DSM_2366 1 1
Sphingobacterium_sp._21 2 2
Owenweeksia_hongkongensis_DSM_17368 1 1
Krokinobacter_sp._4H-3-7-5 1 1
Maribacter_sp._HTCC2170 2 2
Robiginitalea_biformata_HTCC2501 1 1
Ornithobacterium_rhinotracheale_DSM_15997 1 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 2 2
Waddlia_chondrophila_WSU_86-1044 1 1
Candidatus_Protochlamydia_amoebophila_UWE25 2 2
Chlamydophila_caviae_GPIC 1 1
Chlamydophila_abortus_S26/3 1 1
Chlamydia_psittaci_01DC11 1 1
Planctomyces_brasiliensis_DSM_5305 1 1
Planctomyces_limnophilus_DSM_3776 1 1
Rhodopirellula_baltica_SH_1 2 2
Coraliomargarita_akajimensis_DSM_45221 2 1
Opitutus_terrae_PB90-1 3 3
Thermovirga_lienii_DSM_17291 1 1
Aminobacterium_colombiense_DSM_12261 1 1
Thermanaerovibrio_acidaminovorans_DSM_6589 1 1
Anaerobaculum_mobile_DSM_13181 2 2
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._L550 1 1
Leptospira_interrogans_serovar_Lai_str._IPAV 1 1
Brachyspira_murdochii_DSM_12563 1 1
Brachyspira_intermedia_PWS/A 1 1
Brachyspira_pilosicoli_95/1000 1 1
Brachyspira_hyodysenteriae_WA1 1 1
Borrelia_garinii_PBi 1 1
Borrelia_bissettii_DN127 2 2
Borrelia_afzelii_PKo 1 1
Borrelia_burgdorferi_B31 1 1
Borrelia_recurrentis_A1 2 1
Borrelia_duttonii_Ly 3 3
Borrelia_crocidurae_str._Achema 2 1
Borrelia_turicatae_91E135 1 1
Borrelia_hermsii_DAH 1 1
Spirochaeta_caldaria_DSM_7334 1 1
Treponema_primitia_ZAS-2 1 1
Treponema_brennaborense_DSM_12168 1 1
Treponema_paraluiscuniculi_Cuniculi_A 1 1
Treponema_succinifaciens_DSM_2489 1 1
Treponema_pallidum_subsp._pallidum_SS14 2 2
Spirochaeta_africana_DSM_8902 2 2
Thermodesulfobacterium_sp._OPB45 1 1
Desulfurispirillum_indicum_S5 3 2
Calditerrivibrio_nitroreducens_DSM_19672 2 2
Denitrovibrio_acetiphilus_DSM_12809 2 1
Deferribacter_desulfuricans_SSM1 2 2
Flexistipes_sinusarabici_DSM_4947 1 1
Marinitoga_piezophila_KA3 2 2
Petrotoga_mobilis_SJ95 3 2
Mesotoga_prima_MesG1.Ag.4.2 3 2
Kosmotoga_olearia_TBF_19.5.1 1 1
Fervidobacterium_pennivorans_DSM_9078 3 3
Fervidobacterium_nodosum_Rt17-B1 4 4
Thermosipho_africanus_TCF52B 2 2
Thermotoga_lettingae_TMO 5 5
Thermotoga_thermarum_DSM_5069 4 4
Thermotoga_sp._RQ2 4 2
Thermotoga_naphthophila_RKU-10 4 2
Thermotoga_petrophila_RKU-1 6 4
Thermotoga_neapolitana_DSM_4359 4 3
Thermotoga_maritima_MSB8 5 3
Thermovibrio_ammonificans_HB-1 2 2
Desulfurobacterium_thermolithotrophum_DSM_11699 1 1
Sulfurihydrogenibium_sp._YO3AOP1 2 1
Sulfurihydrogenibium_azorense_Az-Fu1 3 3
Hydrogenobaculum_sp._SN 1 1
Hydrogenobaculum_sp._HO 1 1
Hydrogenobaculum_sp._Y04AAS1 2 2
Thermocrinis_albus_DSM_14484 1 1
Dictyoglomus_turgidum_DSM_6724 2 2
Candidatus_Chloracidobacterium_thermophilum_B 3 3
Granulicella_mallensis_MP5ACTX8 1 1
Thermodesulfovibrio_yellowstonii_DSM_11347 2 2
Ilyobacter_polytropus_DSM_2926 1 1
Candidatus_Saccharimonas_aalborgensis 1 1
Bacteriovorax_marinus_SJ 3 3
Bdellovibrio_bacteriovorus_HD100 1 1
Nautilia_profundicola_AmH 1 1
Nitratifractor_salsuginis_DSM_16511 3 3
Campylobacter_lari_RM2100 1 1
Campylobacter_curvus_525.92 1 1
Campylobacter_concisus_13826 1 1
Sulfurimonas_denitrificans_DSM_1251 1 1
Helicobacter_cetorum_MIT_00-7128 2 2
Helicobacter_felis_ATCC_49179 2 1
Nitratiruptor_sp._SB155-2 1 1
Sulfurovum_sp._NBC37-1 1 1
Desulfobacca_acetoxidans_DSM_11109 1 1
Desulfomonile_tiedjei_DSM_6799 3 3
Desulfobulbus_propionicus_DSM_2032 1 1
Desulfatibacillum_alkenivorans_AK-01 3 3
Desulfomicrobium_baculatum_DSM_4028 1 1
Desulfovibrio_magneticus_RS-1 2 2
Desulfovibrio_salexigens_DSM_2638 1 1
Geobacter_daltonii_FRC-32 1 1
Geobacter_uraniireducens_Rf4 1 1
Geobacter_lovleyi_SZ 4 4
Pelobacter_propionicus_DSM_2379 1 1
Babela_massiliensis 1 1
Sorangium_cellulosum_'So_ce_56' 2 2
Anaeromyxobacter_sp._Fw109-5 1 1
Anaeromyxobacter_dehalogenans_2CP-1 2 2
Stigmatella_aurantiaca_DW4/3-1 3 3
Corallococcus_coralloides_DSM_2259 7 5
Myxococcus_xanthus_DK_1622 3 3
Myxococcus_fulvus_HW-1 2 1
Dechloromonas_aromatica_RCB 1 1
Thauera_sp._MZ1T 2 2
Azoarcus_sp._KH32C 2 2
Azoarcus_sp._BH72 1 1
Aromatoleum_aromaticum_EbN1 2 2
Pseudogulbenkiania_sp._NH8B 1 1
Laribacter_hongkongensis_HLHK9 1 1
beta_proteobacterium_CB 1 1
Burkholderia_phytofirmans_PsJN 1 1
Burkholderia_phymatum_STM815 1 1
Burkholderia_xenovorans_LB400 1 1
Ralstonia_pickettii_12D 1 1
Burkholderia_sp._RPE64 2 2
Burkholderia_thailandensis_E264 4 4
Burkholderia_pseudomallei_1106a 4 3
Burkholderia_mallei_SAVP1 5 5
Burkholderia_ambifaria_AMMD 2 2
Burkholderia_cenocepacia_HI2424 3 3
Burkholderia_multivorans_ATCC_17616 3 3
Burkholderia_gladioli_BSR3 2 2
Polaromonas_naphthalenivorans_CJ2 1 1
Variovorax_paradoxus_S110 1 1
Acidovorax_ebreus_TPSY 1 1
Acidovorax_sp._KKS102 1 1
Acidovorax_sp._JS42 1 1
Acidovorax_citrulli_AAC00-1 2 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 2 2
Herbaspirillum_seropedicae_SmR1 1 1
Pusillimonas_sp._T7-7 1 1
Advenella_kashmirensis_WT001 1 1
Taylorella_asinigenitalis_MCE3 2 2
Taylorella_equigenitalis_MCE9 1 1
Bordetella_petrii_DSM_12804 1 1
Achromobacter_xylosoxidans 1 1
Nitrosospira_multiformis_ATCC_25196 1 1
Nitrosomonas_sp._Is79A3 1 1
Nitrosomonas_eutropha_C91 1 1
Nitrosomonas_europaea_ATCC_19718 1 1
Sideroxydans_lithotrophicus_ES-1 1 1
Methylotenera_versatilis_301 1 1
Methylobacillus_flagellatus_KT 1 1
Magnetococcus_marinus_MC-1 2 2
Parvularcula_bermudensis_HTCC2503 1 1
Asticcacaulis_excentricus_CB_48 1 1
Caulobacter_sp._K31 2 2
Caulobacter_crescentus_NA1000 1 1
Caulobacter_segnis_ATCC_21756 1 1
Erythrobacter_litoralis_HTCC2594 1 1
Novosphingobium_sp._PP1Y 1 1
Novosphingobium_aromaticivorans_DSM_12444 2 2
Sphingobium_sp._SYK-6 1 1
Hirschia_baltica_ATCC_49814 1 1
Dinoroseobacter_shibae_DFL_12 2 2
Phaeobacter_gallaeciensis_2.10 2 2
Pseudovibrio_sp._FO-BEG1 1 1
Ketogulonicigenium_vulgare_Y25 1 1
Rhodobacter_sphaeroides_ATCC_17029 1 1
Paracoccus_denitrificans_PD1222 1 1
Tistrella_mobilis_KA081020-065 2 2
Azospirillum_lipoferum_4B 2 2
Azospirillum_brasilense_Sp245 1 1
Acidiphilium_multivorum_AIU301 2 2
Acidiphilium_cryptum_JF-5 1 1
Acetobacter_pasteurianus_IFO_3283-01 1 1
Micavibrio_aeruginosavorus_ARL-13 2 2
alpha_proteobacterium_HIMB5 1 1
Wolbachia_endosymbiont_of_Culex_quinquefasciatus_Pel 2 2
Methylobacterium_sp._4-46 1 1
Methylobacterium_nodulans_ORS_2060 2 2
Methylobacterium_radiotolerans_JCM_2831 1 1
Ochrobactrum_anthropi_ATCC_49188 1 1
Brucella_microti_CCM_4915 2 2
Brucella_pinnipedialis_B2/94 2 2
Brucella_canis_ATCC_23365 2 2
Brucella_suis_ATCC_23445 2 2
Brucella_melitensis_ATCC_23457 2 2
Brucella_ovis_ATCC_25840 2 2
Brucella_abortus_S19 2 2
Methylocella_silvestris_BL2 1 1
Beijerinckia_indica_subsp._indica_ATCC_9039 1 1
Pelagibacterium_halotolerans_B2 3 3
Rhodomicrobium_vannielii_ATCC_17100 1 1
Hyphomicrobium_sp._MC1 1 1
Rhodopseudomonas_palustris_BisA53 2 2
Methylocystis_sp._SC2 1 1
Bartonella_henselae_str._Houston-1 1 1
Bartonella_grahamii_as4aup 1 1
Teredinibacter_turnerae_T7901 1 1
Cellvibrio_japonicus_Ueda107 2 2
Oceanimonas_sp._GK1 1 1
Aeromonas_salmonicida_subsp._salmonicida_A449 2 2
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 1 1
Vibrio_sp._Ex25 1 1
Vibrio_harveyi_ATCC_BAA-1116 3 3
Vibrio_parahaemolyticus_RIMD_2210633 1 1
Photobacterium_profundum_SS9 1 1
Psychromonas_ingrahamii_37 4 4
Shewanella_piezotolerans_WP3 1 1
Shewanella_loihica_PV-4 1 1
Shewanella_oneidensis_MR-1 1 1
Shewanella_baltica_OS185 1 1
Pseudoalteromonas_atlantica_T6c 1 1
Glaciecola_sp._4H-3-7+YE-5 1 1
Glaciecola_nitratireducens_FR1064 2 2
Marinobacter_adhaerens_HP15 1 1
Marinobacter_hydrocarbonoclasticus_ATCC_49840 1 1
Marinobacter_aquaeolei_VT8 1 1
Alteromonas_sp._SN2 4 4
Alteromonas_macleodii_str._'Deep_ecotype' 2 2
Hahella_chejuensis_KCTC_2396 2 2
Alcanivorax_borkumensis_SK2 1 1
Marinomonas_sp._MWYL1 1 1
Chromohalobacter_salexigens_DSM_3043 1 1
Halomonas_elongata_DSM_2581 3 3
Methylomicrobium_alcaliphilum 3 3
Methylococcus_capsulatus_str._Bath 3 2
Pseudoxanthomonas_suwonensis_11-1 1 1
Stenotrophomonas_maltophilia_K279a 2 2
Xanthomonas_axonopodis_pv._citri_str._306 1 1
Xanthomonas_campestris_pv._campestris_str._B100 1 1
Spiribacter_sp._UAH-SP71 1 1
Alkalilimnicola_ehrlichii_MLHE-1 2 2
Thioalkalivibrio_sulfidophilus_HL-EbGr7 3 3
Thioalkalivibrio_sp._K90mix 1 1
Allochromatium_vinosum_DSM_180 2 1
Thiocystis_violascens_DSM_198 1 1
Nitrosococcus_halophilus_Nc4 3 2
Coxiella_burnetii_Dugway_5J108-111 1 1
Legionella_longbeachae_NSW150 2 2
gamma_proteobacterium_HdN1 1 1
Photorhabdus_asymbiotica 1 1
Photorhabdus_luminescens_subsp._laumondii_TTO1 2 2
Xenorhabdus_nematophila_ATCC_19061 1 1
Providencia_stuartii_MRSN_2154 1 1
Rahnella_sp._Y9602 3 3
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 3 3
Yersinia_pestis_Pestoides_F 1 1
Yersinia_enterocolitica_subsp._enterocolitica_8081 1 1
Serratia_sp._AS12 2 2
Serratia_sp._ATCC_39006 1 1
Serratia_plymuthica_AS9 2 2
Serratia_proteamaculans_568 1 1
Dickeya_dadantii_Ech703 1 1
Dickeya_zeae_Ech1591 1 1
Pectobacterium_wasabiae_WPP163 2 2
Pectobacterium_sp._SCC3193 2 2
Pectobacterium_atrosepticum_SCRI1043 1 1
Pectobacterium_carotovorum_subsp._carotovorum_PC1 1 1
Pantoea_sp._At-9b 1 1
Pantoea_ananatis_LMG_20103 1 1
Erwinia_pyrifoliae_Ep1/96 1 1
Erwinia_amylovora_ATCC_49946 1 1
Escherichia_blattae_DSM_4481 1 1
Shigella_flexneri_5_str._8401 1 1
Salmonella_bongori_NCTC_12419 1 1
Klebsiella_oxytoca_E718 2 2
Klebsiella_variicola_At-22 2 2
Klebsiella_pneumoniae_NTUH-K2044 1 1
Escherichia_fergusonii_ATCC_35469 1 1
Enterobacter_sp._R4-368 3 2
Enterobacter_sp._638 1 1
Enterobacter_asburiae_LF7a 1 1
Enterobacter_cloacae_subsp._dissolvens_SDM 1 1
Citrobacter_koseri_ATCC_BAA-895 1 1
Pseudomonas_stutzeri_A1501 1 1
Pseudomonas_fulva_12-X 1 1
Pseudomonas_protegens_Pf-5 1 1
Pseudomonas_sp._VLB120 2 2
Moraxella_catarrhalis_RH4 1 1
Acinetobacter_calcoaceticus_PHEA-2 1 1
Methylophaga_sp._JAM1 2 2
Thioalkalimicrobium_cyclicum_ALM1 1 1
Francisella_tularensis_subsp._tularensis_WY96-3418 1 1
Francisella_cf._novicida_3523 1 1
Francisella_novicida_U112 1 1
Nanoarchaeum_equitans_Kin4-M 1 1
Candidatus_Caldiarchaeum_subterraneum 2 2
Cenarchaeum_symbiosum_A 1 1
Candidatus_Nitrosopumilus_sp._AR2 3 2
Nitrosopumilus_maritimus_SCM1 1 1
Candidatus_Korarchaeum_cryptofilum_OPF8 2 2
Fervidicoccus_fontis_Kam940 1 1
Pyrolobus_fumarii_1A 2 2
Hyperthermus_butylicus_DSM_5456 3 3
Thermogladius_cellulolyticus_1633 2 2
Ignisphaera_aggregans_DSM_17230 6 6
Aeropyrum_pernix_K1 3 3
Thermosphaera_aggregans_DSM_11486 2 2
Metallosphaera_cuprina_Ar-4 1 1
Metallosphaera_sedula_DSM_5348 3 3
Acidianus_hospitalis_W1 1 1
Sulfolobus_tokodaii_str._7 1 1
Sulfolobus_solfataricus_P2 1 1
Thermofilum_sp._1910b 5 5
Thermofilum_pendens_Hrk_5 3 3
Vulcanisaeta_distributa_DSM_14429 4 4
Caldivirga_maquilingensis_IC-167 3 3
Pyrobaculum_sp._1860 12 12
Pyrobaculum_calidifontis_JCM_11548 2 2
Pyrobaculum_arsenaticum_DSM_13514 5 5
Pyrobaculum_oguniense_TE7 3 3
Thermoproteus_neutrophilus_V24Sta 4 4
Pyrobaculum_aerophilum_str._IM2 8 8
Pyrobaculum_islandicum_DSM_4184 1 1
Thermoproteus_tenax_Kra_1 3 3
halophilic_archaeon_DL31 2 2
Methanocella_conradii_HZ254 1 1
Methanosaeta_harundinacea_6Ac 1 1
Methanosaeta_thermophila_PT 1 1
Methanosalsum_zhilinae_DSM_4017 2 2
Methanohalobium_evestigatum_Z-7303 2 2
Methanosarcina_acetivorans_C2A 3 3
Methanosarcina_mazei_Go1 3 3
Methanosarcina_barkeri_str._Fusaro 1 1
Methanohalophilus_mahii_DSM_5219 2 1
Methanosphaerula_palustris_E1-9c 1 1
Methanoregula_boonei_6A8 2 2
Methanospirillum_hungatei_JF-1 1 1
Methanoplanus_petrolearius_DSM_11571 1 1
Methanopyrus_kandleri_AV19 3 3
Ferroglobus_placidus_DSM_10642 1 1
Archaeoglobus_profundus_DSM_5631 2 1
Thermococcus_sp._4557 2 1
Thermococcus_onnurineus_NA1 2 1
Thermococcus_kodakarensis_KOD1 1 1
Thermococcus_gammatolerans_EJ3 2 2
Thermococcus_sibiricus_MM_739 2 1
Thermococcus_barophilus_MP 2 1
Pyrococcus_sp._ST04 3 2
Pyrococcus_yayanosii_CH1 2 2
Pyrococcus_horikoshii_OT3 3 2
Pyrococcus_abyssi_GE5 2 2
Pyrococcus_furiosus_COM1 1 1
Thermoplasma_acidophilum_DSM_1728 1 1
Salinarchaeum_sp._Harcht-Bsk1 6 5
Halopiger_xanaduensis_SH-6 4 4
Haloterrigena_turkmenica_DSM_5511 5 5
Natrinema_sp._J7-2 5 5
Natrialba_magadii_ATCC_43099 10 10
Halorubrum_lacusprofundi_ATCC_49239 5 5
Haloquadratum_walsbyi_DSM_16790 2 2
Halogeometricum_borinquense_DSM_11551 3 3
Haloferax_mediterranei_ATCC_33500 4 3
Haloferax_volcanii_DS2 4 3
Halomicrobium_mukohataei_DSM_12286 5 4
Halorhabdus_utahensis_DSM_12940 1 1
Natronomonas_pharaonis_DSM_2160 4 4
Haloarcula_hispanica_ATCC_33960 4 4
Haloarcula_marismortui_ATCC_43049 4 4
Halalkalicoccus_jeotgali_B3 1 1
Halobacterium_salinarum_R1 3 3
Halobacterium_sp._NRC-1 3 3
Methanotorris_igneus_Kol_5 1 1
Methanocaldococcus_fervens_AG86 1 1
Methanothermus_fervidus_DSM_2088 1 1
Methanosphaera_stadtmanae_DSM_3091 1 1
Methanobrevibacter_ruminantium_M1 1 1
Methanobrevibacter_smithii_ATCC_35061 1 1
Aciduliprofundum_sp._MAR08-339 1 1
Aciduliprofundum_boonei_T469 3 3

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   80 77
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   34 32
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   40 38
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   32 24
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   29 23
Cryptococcus_neoformans_var._grubii_H99_ 6 6
Cryptococcus_neoformans_B-3501A_ 9 9
Cryptococcus_neoformans_JEC21_ 7 7
Paracoccidioides_brasiliensis_Pb01_ 8 8
Paracoccidioides_brasiliensis_Pb03_ 8 8
Coccidioides_posadasii_str._Silveira_ 4 4
Coccidioides_immitis_RMSCC_3703_ 2 2
Coccidioides_immitis_RMSCC_2394_ 4 4
Coccidioides_immitis_H538.4_ 3 3
Ajellomyces_dermatitidis_ER-3_ 6 6
Histoplasma_capsulatum_H143 4 4
Histoplasma_capsulatum_H88 4 4
Histoplasma_capsulatum_G186AR 3 3
Aspergillus_fumigatus_A1163_ 8 7
Candida_albicans_WO-1_ 6 6
Saccharomyces_cerevisiae_UC5 4 3
Saccharomyces_cerevisiae_PW5 5 4
Saccharomyces_cerevisiae_FL100 2 2
Saccharomyces_cerevisiae_CLIB382 3 2
Saccharomyces_cerevisiae_CLIB324 4 3
Saccharomyces_cerevisiae_CBS7960 4 4
Saccharomyces_cerevisiae_YJM269 5 4
Saccharomyces_cerevisiae_T7 5 4
Saccharomyces_cerevisiae_FostersB 5 4
Saccharomyces_cerevisiae_FostersO 7 6
Saccharomyces_cerevisiae_VL3 6 5
Saccharomyces_cerevisiae_Vin13 5 4
Saccharomyces_cerevisiae_LalvinQA23 8 7
Saccharomyces_cerevisiae_AWRI796 5 4
Saccharomyces_cerevisiae_Sigma1278b 6 5
Saccharomyces_cerevisiae_W303 7 6
Saccharomyces_cerevisiae_JAY291 6 5
Saccharomyces_cerevisiae_AWRI1631 4 3
Saccharomyces_cerevisiae_YPS163 4 3
Saccharomyces_cerevisiae_M22 1 1
Saccharomyces_cerevisiae_T73 4 3
Saccharomyces_cerevisiae_CLIB215 4 3
Saccharomyces_cerevisiae_Y10 1 1
Saccharomyces_cerevisiae_YJM789_ 7 6
Saccharomyces_cerevisiae_YJM789 7 6
Saccharomyces_cerevisiae_RM11-1a 7 6
Saccharomyces_cerevisiae_RM11-1a_ 7 6
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   6 5
Schizosaccharomyces_pombe_972h-_ 10 9
Batrachochytrium_dendrobatidis_JEL423_ 5 5
Batrachochytrium_dendrobatidis_JAM81_ 3 3
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   20 17
Hordeum_vulgare_22   (Domesticated barley)   55 55
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   24 22
Trypanosoma_brucei_Lister_427_v4.1 9 5
Neospora_caninum_Nc-Liverpool_6.2 2 2
Plasmodium_falciparum_HB3_ 4 4
Plasmodium_falciparum_Dd2_ 4 4
Chroococcidiopsis_thermalis_PCC_7203 1 1
Chamaesiphon_minutus_PCC_6605 1 1
Synechocystis_sp._PCC_6803_substr._PCC-P 1 1
Synechocystis_sp._PCC_6803_substr._PCC-N 1 1
Synechocystis_sp._PCC_6803_substr._GT-I 1 1
Synechocystis_sp._PCC_6803 1 1
Dactylococcopsis_salina_PCC_8305 2 2
Synechococcus_sp._JA-2-3B'a(2-13) 5 5
Synechococcus_sp._JA-3-3Ab 7 7
Synechococcus_sp._CC9902 1 1
Synechococcus_sp._CC9605 1 1
Synechococcus_elongatus_PCC_6301 1 1
Prochlorococcus_marinus_str._MIT_9301 1 1
Prochlorococcus_marinus_str._AS9601 1 1
Prochlorococcus_marinus_subsp._pastoris_str._CCMP1986 1 1
Prochlorococcus_marinus_str._MIT_9215 1 1
Prochlorococcus_marinus_str._MIT_9313 1 1
Prochlorococcus_marinus_str._MIT_9312 1 1
Prochlorococcus_marinus_str._MIT_9303 1 1
Crinalium_epipsammum_PCC_9333 2 2
Oscillatoria_nigro-viridis_PCC_7112 6 6
Oscillatoria_acuminata_PCC_6304 6 6
Arthrospira_platensis_NIES-39 7 5
Cyanothece_sp._PCC_7822 7 7
Cyanothece_sp._PCC_7425 2 2
Cyanothece_sp._PCC_7424 5 4
Cyanothece_sp._ATCC_51142 4 4
Cyanothece_sp._PCC_8801 1 1
Cyanobacterium_aponinum_PCC_10605 2 2
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 1 1
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 4 4
Stanieria_cyanosphaera_PCC_7437 2 2
Calothrix_parietina_Calothrix_sp._PCC_6303 5 5
Anabaena_cylindrica_PCC_7122 4 3
Candidatus_Phytoplasma_australiense_Strawberry_lethal_yellows_phytoplasma_(CPA)_str._NZSb11 1 1
Spiroplasma_apis_B31 1 1
Mycoplasma_leachii_PG50 1 1
Candidatus_Mycoplasma_haemominutum_'Birmingham_1' 1 1
Mycoplasma_cynos_C142 2 2
Mycoplasma_pneumoniae_M129-B7 2 2
Mycoplasma_pneumoniae_FH 1 1
Mycoplasma_pneumoniae_M129 1 1
Gordonibacter_pamelaeae_7-10-1-b 1 1
Adlercreutzia_equolifaciens_DSM_19450 2 2
Streptomyces_rapamycinicus_NRRL_5491 1 1
Streptomyces_venezuelae_ATCC_10712 1 1
Streptomyces_collinus_Tu_365 1 1
Saccharothrix_espanaensis_DSM_44229 2 1
Amycolatopsis_mediterranei_RB 2 2
Amycolatopsis_mediterranei_S699 2 2
Amycolatopsis_mediterranei_S699 2 2
Amycolatopsis_orientalis_HCCB10007 1 1
Nocardia_brasiliensis_ATCC_700358 1 1
Mycobacterium_tuberculosis_CAS/NITR204 1 1
Mycobacterium_gilvum_Spyr1 1 1
Corynebacterium_ulcerans_BR-AD22 1 1
Corynebacterium_ulcerans_809 2 2
Corynebacterium_pseudotuberculosis_258 1 1
Corynebacterium_pseudotuberculosis_P54B96 1 1
Corynebacterium_pseudotuberculosis_267 1 1
Corynebacterium_pseudotuberculosis_42/02-A 1 1
Corynebacterium_pseudotuberculosis_3/99-5 1 1
Corynebacterium_pseudotuberculosis_CIP_52.97 1 1
Corynebacterium_pseudotuberculosis_PAT10 1 1
Corynebacterium_pseudotuberculosis_I19 1 1
Corynebacterium_pseudotuberculosis_FRC41 1 1
Corynebacterium_pseudotuberculosis_C231 1 1
Corynebacterium_pseudotuberculosis_1002 1 1
Corynebacterium_diphtheriae_HC02 1 1
Gardnerella_vaginalis_HMP9231 2 2
Gardnerella_vaginalis_ATCC_14019 2 2
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 2 2
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 2 2
Actinomyces_graevenitzii_C83_ 1 1
Dehalococcoides_mccartyi_BTF08 2 2
Deinococcus_peraridilitoris_DSM_19664 1 1
Thermus_oshimai_JL-2 1 1
Thermus_thermophilus_JL-18 1 1
Thermus_thermophilus_HB8 1 1
Erysipelothrix_rhusiopathiae_SY1027 2 2
Clostridium_thermocellum_DSM_1313 3 3
[Clostridium]_stercorarium_Clostridiu_subsp._stercorarium_DSM_8532 1 1
Ruminococcus_champanellensis_18P13 1 1
Clostridium_acidurici_9a 3 3
Desulfosporosinus_meridiei_DSM_13257 2 2
Desulfitobacterium_dichloroeliminans_LMG_P-21439 1 1
Desulfitobacterium_hafniense_DCB-2 4 4
Desulfotomaculum_gibsoniae_DSM_7213 1 1
Clostridium_difficile_BI1 6 5
Clostridium_difficile_R20291 4 4
Clostridium_difficile_CD196 4 4
Roseburia_intestinalis_XB6B4 2 2
Clostridium_saccharobutylicum_DSM_13864 4 4
Clostridium_autoethanogenum_DSM_10061 1 1
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 1 1
Clostridium_kluyveri_NBRC_12016 2 2
Clostridium_perfringens_SM101 1 1
Clostridium_pasteurianum_BC1 5 5
Clostridium_botulinum_H04402_065 2 2
Clostridium_botulinum_BKT015925 2 2
Clostridium_botulinum_F_str._Langeland 3 3
Clostridium_botulinum_B1_str._Okra 4 4
Clostridium_botulinum_Ba4_str._657 3 3
Clostridium_botulinum_A2_str._Kyoto 2 2
Clostridium_botulinum_A3_str._Loch_Maree 2 2
Clostridium_botulinum_A_str._Hall 2 2
Clostridium_botulinum_A_str._ATCC_19397 4 4
Clostridium_acetobutylicum_DSM_1731 2 2
Clostridium_acetobutylicum_EA_2018 2 2
Thermoanaerobacterium_saccharolyticum_JW/SL-YS485 4 4
Thermoanaerobacterium_thermosaccharolyticum_M0795 2 2
Thermacetogenium_phaeum_DSM_12270 2 2
Thermoanaerobacter_sp._X513 2 2
Enterococcus_mundtii_QU_25 1 1
Enterococcus_faecium_Aus0085 3 3
Enterococcus_faecium_NRRL_B-2354 4 4
Enterococcus_faecium_DO 2 2
Enterococcus_faecalis_str._Symbioflor_1 1 1
Enterococcus_faecalis_V583 1 1
Leuconostoc_carnosum_JB16 1 1
Leuconostoc_mesenteroides_subsp._mesenteroides_J18 1 1
Leuconostoc_gelidum_JB7 2 2
Lactobacillus_paracasei_subsp._paracasei_8700:2 5 5
Lactobacillus_casei_LOCK919 2 2
Lactobacillus_casei_W56 1 1
Lactobacillus_casei_LC2W 1 1
Lactobacillus_casei_BD-II 1 1
Lactobacillus_casei_BL23 1 1
Lactobacillus_casei_str._Zhang 2 2
Lactobacillus_rhamnosus_LOCK908 2 2
Lactobacillus_rhamnosus_LOCK900 2 2
Lactobacillus_rhamnosus_ATCC_8530 2 2
Lactobacillus_rhamnosus_GG 2 2
Lactobacillus_rhamnosus_GG 2 2
Lactobacillus_johnsonii_N6.2 3 3
Lactobacillus_johnsonii_DPC_6026 4 3
Lactobacillus_johnsonii_NCC_533 3 2
Lactobacillus_salivarius_UCC118 3 3
Lactobacillus_fermentum_F-6 1 1
Lactobacillus_fermentum_CECT_5716 2 2
Lactobacillus_reuteri_TD1 2 2
Lactobacillus_reuteri_JCM_1112 3 3
Lactobacillus_reuteri_SD2112 2 2
Lactobacillus_plantarum_16 1 1
Lactobacillus_plantarum_ZJ316 1 1
Lactobacillus_plantarum_subsp._plantarum_ST-III 2 2
Lactobacillus_plantarum_subsp._plantarum_P-8 1 1
Lactobacillus_helveticus_CNRZ32 1 1
Lactobacillus_delbrueckii_subsp._bulgaricus_ND02 2 2
Lactobacillus_brevis_KB290 1 1
Lactobacillus_acidophilus_La-14 1 1
Lactobacillus_acidophilus_NCFM 1 1
Pediococcus_pentosaceus_SL4 1 1
Lactococcus_lactis_subsp._lactis_IO-1 1 1
Lactococcus_lactis_subsp._lactis_Il1403 1 1
Streptococcus_anginosus_C1051 2 2
Streptococcus_equi_subsp._zooepidemicus_ATCC_35246 1 1
Streptococcus_equi_subsp._zooepidemicus_MGCS10565 2 2
Streptococcus_equi_subsp._zooepidemicus 1 1
Streptococcus_dysgalactiae_subsp._equisimilis_RE378 2 2
Streptococcus_oligofermentans_AS_1.3089 1 1
Streptococcus_pyogenes_MGAS1882 1 1
Streptococcus_pyogenes_MGAS15252 1 1
Streptococcus_pyogenes_MGAS10750 1 1
Streptococcus_pyogenes_MGAS10270 1 1
Streptococcus_pyogenes_NZ131 1 1
Streptococcus_pneumoniae_gamPNI0373 1 1
Streptococcus_pneumoniae_AP200 1 1
Streptococcus_agalactiae_NEM316 1 1
Streptococcus_suis_TL13 3 2
Streptococcus_suis_D12 2 2
Thermobacillus_composti_KWC4 1 1
Paenibacillus_sp._Y412MC10 1 1
Paenibacillus_mucilaginosus_KNP414 1 1
Paenibacillus_mucilaginosus_K02 1 1
Paenibacillus_larvae_subsp._larvae_DSM_25430 1 1
Paenibacillus_polymyxa_CR1 1 1
Paenibacillus_polymyxa_SC2 1 1
Paenibacillus_polymyxa_E681 1 1
Listeria_monocytogenes_EGD_sequence 1 1
Listeria_monocytogenes_M7 2 2
Listeria_monocytogenes_J1-220 1 1
Listeria_monocytogenes_SLCC5850 1 1
Listeria_monocytogenes_SLCC2479 1 1
Listeria_monocytogenes_SLCC2540 1 1
Listeria_monocytogenes_serotype_1/2b_str._SLCC2755 1 1
Listeria_monocytogenes_serotype_1/2c_str._SLCC2372 1 1
Listeria_monocytogenes_08-5578 1 1
Listeria_monocytogenes_08-5923 1 1
Listeria_monocytogenes_L99 2 2
Listeria_monocytogenes_HCC23 2 2
Listeria_monocytogenes_FSL_R2-561 1 1
Geobacillus_sp._C56-T3 8 8
Geobacillus_sp._Y4.1MC1 2 2
Geobacillus_sp._Y412MC52 5 5
Geobacillus_sp._Y412MC61 5 5
Bacillus_amyloliquefaciens_subsp._plantarum_sequencing 2 2
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5033 2 2
Bacillus_amyloliquefaciens_subsp._plantarum_AS43.3 2 2
Bacillus_amyloliquefaciens_subsp._plantarum_YAU_B9601-Y2 2 2
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5113 2 2
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5036 2 2
Bacillus_amyloliquefaciens_subsp._plantarum_CAU_B946 2 2
Bacillus_amyloliquefaciens_LFB112 3 3
Bacillus_amyloliquefaciens_CC178 2 2
Bacillus_amyloliquefaciens_Y2 1 1
Bacillus_amyloliquefaciens_IT-45 2 2
Bacillus_amyloliquefaciens_XH7 4 4
Bacillus_amyloliquefaciens_LL3 3 3
Bacillus_amyloliquefaciens_TA208 4 4
Bacillus_amyloliquefaciens_DSM_7 4 4
Bacillus_licheniformis_9945A 3 3
Bacillus_subtilis_PY79 1 1
Bacillus_subtilis_XF-1 1 1
Bacillus_subtilis_QB928 1 1
Bacillus_subtilis_BSn5 1 1
Bacillus_subtilis_subsp._subtilis_str._BAB-1 1 1
Bacillus_subtilis_subsp._subtilis_str._BSP1 1 1
Bacillus_subtilis_subsp._subtilis_6051-HGW 1 1
Bacillus_subtilis_subsp._spizizenii_TU-B-10 2 2
Bacillus_subtilis_subsp._spizizenii_str._W23 1 1
Bacillus_subtilis_subsp._natto_BEST195 1 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 3 3
Bacillus_infantis_NRRL_B-14911 2 2
Bacillus_cereus_subsp._cytotoxis_NVH_391-98 6 6
Bacillus_toyonensis_BCT-7112 1 1
Bacillus_thuringiensis_HD-771 6 6
Bacillus_thuringiensis_HD-789 2 2
Bacillus_thuringiensis_MC28 2 2
Bacillus_thuringiensis_serovar_chinensis_CT-43 2 2
Bacillus_thuringiensis_YBT-1518 3 3
Bacillus_thuringiensis_Bt407 2 2
Bacillus_thuringiensis_serovar_konkukian_str._97-27 2 2
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 9 9
Bacillus_thuringiensis_serovar_finitimus_YBT-020 3 3
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 2 2
Bacillus_cereus_FRI-35 1 1
Bacillus_cereus_AH820 1 1
Bacillus_cereus_AH187 4 4
Bacillus_cereus_B4264 2 2
Bacillus_cereus_G9842 2 2
Bacillus_cereus_Q1 1 1
Bacillus_cereus_NC7401 3 3
Bacillus_cereus_E33L 2 2
Bacillus_cereus_ATCC_14579 1 1
Bacillus_cereus_ATCC_10987 2 2
Bacillus_anthracis_str._H9401 1 1
Bacillus_anthracis_str._CDC_684 1 1
Bacillus_anthracis_str._'Ames_Ancestor' 1 1
Bacillus_anthracis_str._Sterne 2 2
Bacillus_megaterium_WSH-002 1 1
Bacillus_megaterium_QM_B1551 2 2
Staphylococcus_pasteuri_SP1 2 2
Staphylococcus_lugdunensis_N920143 1 1
Staphylococcus_warneri_SG1 1 1
Staphylococcus_aureus_CA-347 1 1
Staphylococcus_aureus_Bmb9393 1 1
Staphylococcus_aureus_M1 1 1
Staphylococcus_aureus_08BA02176 1 1
Staphylococcus_aureus_ST228/18412 1 1
Staphylococcus_aureus_ST228/18341 1 1
Staphylococcus_aureus_ST228/16125 1 1
Staphylococcus_aureus_ST228/16035 1 1
Staphylococcus_aureus_ST228/15532 1 1
Staphylococcus_aureus_ST228/10497 1 1
Staphylococcus_aureus_ST228/10388 1 1
Staphylococcus_aureus_subsp._aureus_11819-97 1 1
Staphylococcus_aureus_subsp._aureus_HO_5096_0412 2 2
Staphylococcus_aureus_subsp._aureus_ED133 2 2
Staphylococcus_aureus_subsp._aureus_ED98 1 1
Staphylococcus_aureus_subsp._aureus_55/2053 2 2
Staphylococcus_aureus_subsp._aureus_TCH60 1 1
Staphylococcus_aureus_subsp._aureus_S0385 2 2
Staphylococcus_aureus_subsp._aureus_USA300_TCH1516 2 2
Staphylococcus_aureus_subsp._aureus_USA300_FPR3757 2 2
Staphylococcus_aureus_subsp._aureus_JH9 1 1
Staphylococcus_aureus_subsp._aureus_MSSA476 1 1
Staphylococcus_aureus_subsp._aureus_MRSA252 1 1
Staphylococcus_aureus_subsp._aureus_MW2 1 1
Staphylococcus_aureus_subsp._aureus_COL 1 1
Staphylococcus_aureus_subsp._aureus_NCTC_8325 1 1
Salinibacter_ruber_DSM_13855 3 3
Rhodothermus_marinus_SG0.5JP17-172 2 2
Echinicola_vietnamensis_DSM_17526 1 1
Alistipes_shahii_WAL_8301 1 1
Psychroflexus_torquis_ATCC_700755 2 2
Fibrobacter_succinogenes_subsp._succinogenes_S85 2 2
Chlamydia_psittaci_01DC12 1 1
Chlamydia_psittaci_WC 1 1
Chlamydia_psittaci_M56 2 2
Chlamydia_psittaci_WS/RT/E30 1 1
Chlamydia_psittaci_VS225 2 2
Chlamydia_psittaci_MN 1 1
Chlamydia_psittaci_GR9 1 1
Chlamydia_psittaci_84/55 1 1
Chlamydia_psittaci_08DC60 1 1
Chlamydia_psittaci_02DC15 1 1
Chlamydia_psittaci_C19/98 1 1
Chlamydia_psittaci_NJ1 1 1
Chlamydia_psittaci_CP3 1 1
Chlamydophila_psittaci_RD1 1 1
Chlamydia_psittaci_Mat116 2 2
Chlamydophila_psittaci_6BC 1 1
Chlamydophila_psittaci_6BC 1 1
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 1 1
Leptospira_interrogans_serovar_Lai_str._56601 1 1
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 1 1
Brachyspira_pilosicoli_WesB 1 1
Brachyspira_pilosicoli_B2904 1 1
Brachyspira_pilosicoli_P43/6/78 1 1
Borrelia_garinii_NMJW1 1 1
Borrelia_garinii_BgVir 1 1
Borrelia_afzelii_PKo 1 1
Borrelia_burgdorferi_JD1 4 4
Borrelia_burgdorferi_N40 2 2
Borrelia_miyamotoi_LB-2001 1 1
Treponema_pallidum_str._Fribourg-Blanc 1 1
Treponema_pallidum_subsp._pertenue_str._Gauthier 1 1
Treponema_pallidum_subsp._pertenue_str._CDC2 1 1
Treponema_pallidum_subsp._pertenue_str._SamoaD 1 1
Treponema_pallidum_subsp._pallidum_str._Mexico_A 1 1
Treponema_pallidum_subsp._pallidum_str._Chicago 1 1
Treponema_pallidum_subsp._pallidum_DAL-1 1 1
Treponema_pallidum_subsp._pallidum_str._Nichols 1 1
Thermotoga_maritima_MSB8 5 3
Fusobacterium_nucleatum_subsp._animalis_4_8 1 1
Bdellovibrio_exovorus_JSS 2 2
Bdellovibrio_bacteriovorus_str._Tiberius 1 1
Campylobacter_coli_15-537360 1 1
Campylobacter_coli_CVM_N29710 1 1
Helicobacter_pylori_Aklavik86 1 1
Helicobacter_pylori_ELS37 1 1
Helicobacter_pylori_India7 1 1
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 2 2
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 1 1
Geobacter_sp._M18 1 1
Anaeromyxobacter_sp._K 2 2
Anaeromyxobacter_dehalogenans_2CP-C 1 1
Myxococcus_stipitatus_DSM_14675 4 3
Neisseria_meningitidis_8013 1 1
Neisseria_meningitidis_Z2491 1 1
Neisseria_meningitidis_MC58 1 1
Burkholderia_phenoliruptrix_BR3459a 3 3
Ralstonia_pickettii_12J 1 1
Ralstonia_solanacearum_FQY_4 1 1
Ralstonia_solanacearum_Po82 1 1
Ralstonia_solanacearum_PSI07 1 1
Ralstonia_solanacearum_CMR15 1 1
Polynucleobacter_necessarius_subsp._necessarius_STIR1 1 1
Burkholderia_sp._YI23 2 2
Burkholderia_sp._CCGE1003 2 1
Burkholderia_sp._CCGE1001 1 1
Burkholderia_thailandensis_MSMB121 2 2
Burkholderia_pseudomallei_MSHR305 2 2
Burkholderia_pseudomallei_NCTC_13179 3 3
Burkholderia_pseudomallei_BPC006 2 2
Burkholderia_pseudomallei_1026b 2 2
Burkholderia_pseudomallei_MSHR346 1 1
Burkholderia_pseudomallei_668 2 2
Burkholderia_pseudomallei_1710b 2 2
Burkholderia_pseudomallei_K96243 2 2
Burkholderia_mallei_NCTC_10229 2 2
Burkholderia_mallei_NCTC_10247 2 2
Burkholderia_mallei_ATCC_23344 5 4
Burkholderia_lata 1 1
Burkholderia_ambifaria_MC40-6 1 1
Burkholderia_cenocepacia_MC0-3 4 4
Burkholderia_cenocepacia_AU_1054 3 3
Burkholderia_cenocepacia_J2315 3 3
Burkholderia_multivorans_ATCC_17616 3 3
Burkholderia_cepacia_GG4 2 2
Taylorella_asinigenitalis_14/45 1 1
Taylorella_equigenitalis_14/56 1 1
Taylorella_equigenitalis_ATCC_35865 1 1
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 1 1
Sulfuricella_denitrificans_skB26 1 1
Caulobacter_crescentus_CB15 1 1
Zymomonas_mobilis_subsp._mobilis_CP4 1 1
Phaeobacter_gallaeciensis_DSM_17395 2 2
Phaeobacter_gallaeciensis_DSM_26640 2 2
Rhodobacter_sphaeroides_KD131 1 1
Rhodobacter_sphaeroides_ATCC_17025 1 1
Rhodobacter_sphaeroides_2.4.1 1 1
Rhodospirillum_rubrum_ATCC_11170 1 1
Acetobacter_pasteurianus_386B 1 1
Acetobacter_pasteurianus_IFO_3283-12 1 1
Acetobacter_pasteurianus_IFO_3283-01-42C 1 1
Acetobacter_pasteurianus_IFO_3283-32 1 1
Acetobacter_pasteurianus_IFO_3283-26 1 1
Acetobacter_pasteurianus_IFO_3283-22 1 1
Acetobacter_pasteurianus_IFO_3283-07 1 1
Acetobacter_pasteurianus_IFO_3283-03 1 1
Wolbachia_endosymbiont_of_Drosophila_simulans_wHa 1 1
Wolbachia_endosymbiont_of_Drosophila_simulans_wNo 1 1
Brucella_ceti_TE10759-12 1 1
Brucella_canis_HSK_A52141 2 2
Brucella_suis_VBI22 2 2
Brucella_suis_1330 2 2
Brucella_suis_1330 2 2
Brucella_melitensis_NI 2 2
Brucella_melitensis_M5-90 2 2
Brucella_melitensis_M28 2 2
Brucella_abortus_A13334 2 2
Brucella_melitensis_biovar_Abortus_2308 2 2
Brucella_abortus_bv._1_str._9-941 2 2
Rhizobium_leguminosarum_bv._trifolii_WSM1325 1 1
Hyphomicrobium_denitrificans_1NES1 1 1
Rhodopseudomonas_palustris_BisB18 2 2
Bradyrhizobium_oligotrophicum_S58 1 1
Simiduia_agarivorans_SA1_=_DSM_21679 2 2
Mannheimia_haemolytica_USMARC_2286 2 2
Mannheimia_haemolytica_M42548 3 3
Mannheimia_haemolytica_D174 5 5
Mannheimia_haemolytica_D171 2 2
Mannheimia_haemolytica_D153 3 3
Mannheimia_haemolytica_USDA-ARS-USMARC-183 3 3
Mannheimia_haemolytica_USDA-ARS-USMARC-185 2 2
Pasteurella_multocida_subsp._multocida_str._HN06 1 1
Haemophilus_influenzae_KR494 1 1
Haemophilus_influenzae_F3031 1 1
Haemophilus_influenzae_10810 1 1
Haemophilus_influenzae_86-028NP 1 1
Aeromonas_hydrophila_ML09-119 1 1
Shewanella_sp._ANA-3 2 2
Shewanella_baltica_OS678 1 1
Shewanella_baltica_OS195 1 1
Glaciecola_psychrophila_170 3 2
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 3 2
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 3 2
Alteromonas_macleodii_str._'Ionian_Sea_U8' 1 1
Alteromonas_macleodii_str._'Ionian_Sea_U7' 1 1
Alteromonas_macleodii_str._'Ionian_Sea_U4' 1 1
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 2 2
Alteromonas_macleodii_str._'English_Channel_615' 2 2
Alteromonas_macleodii_AltDE1 2 1
Alteromonas_macleodii_str._'English_Channel_673' 2 2
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 3 3
Alteromonas_macleodii_str._'Black_Sea_11' 1 1
Alteromonas_macleodii_ATCC_27126 2 2
Thalassolituus_oleivorans_MIL-1 1 1
Stenotrophomonas_maltophilia_D457 2 2
Stenotrophomonas_maltophilia_JV3 1 1
Stenotrophomonas_maltophilia_R551-3 1 1
Xanthomonas_citri_subsp._citri_Aw12879 2 2
Xanthomonas_axonopodis_pv._citrumelo_F1 1 1
Xanthomonas_axonopodis_Xac29-1 1 1
Thioalkalivibrio_nitratireducens_DSM_14787 1 1
Thioflavicoccus_mobilis_8321 1 1
Coxiella_burnetii_CbuK_Q154 1 1
Coxiella_burnetii_CbuG_Q212 1 1
Coxiella_burnetii_RSA_331 1 1
Coxiella_burnetii_RSA_493 1 1
Proteus_mirabilis_BB2000 1 1
Rahnella_aquatilis_HX2 3 3
Yersinia_pestis_A1122 1 1
Yersinia_pestis_Z176003 1 1
Yersinia_pestis_D182038 1 1
Yersinia_pestis_D106004 1 1
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 1 1
Yersinia_pestis_Nepal516 1 1
Yersinia_pestis_Antiqua 1 1
Yersinia_pestis_Angola 1 1
Yersinia_pestis_CO92 1 1
Yersinia_pestis_KIM10+ 1 1
Serratia_sp._AS13 2 2
Serratia_plymuthica_S13 1 1
Serratia_plymuthica_4Rx13 1 1
Serratia_marcescens_FGI94 2 2
Serratia_marcescens_WW4 1 1
Serratia_liquefaciens_ATCC_27592 2 2
Dickeya_dadantii_Ech586 2 2
Dickeya_dadantii_3937 1 1
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 1 1
Pantoea_ananatis_LMG_5342 1 1
Pantoea_ananatis_PA13 1 1
Pantoea_ananatis_AJ13355 2 2
Erwinia_pyrifoliae_DSM_12163 1 1
Erwinia_amylovora_CFBP1430 1 1
Raoultella_ornithinolytica_B6 1 1
Shigella_flexneri_2002017 2 2
Shigella_flexneri_2a_str._2457T 1 1
Shigella_flexneri_2a_str._301 1 1
Salmonella_bongori_N268-08 1 1
Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 1 1
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 1 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL254 1 1
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_var._5-_str._CFSAN001921 2 2
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18 1 1
Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._2007-60-3289-1 1 1
Salmonella_enterica_subsp._enterica_Serovar_Heidelberg_str._CFSAN002069 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._B182 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578 2 2
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._SL476 1 1
Salmonella_enterica_subsp._enterica_serovar_Pullorum_str._S06004 1 1
Klebsiella_oxytoca_KCTC_1686 2 2
Klebsiella_pneumoniae_JM45 2 2
Klebsiella_pneumoniae_CG43 2 2
Klebsiella_pneumoniae_KCTC_2242 1 1
Klebsiella_pneumoniae_342 2 2
Klebsiella_pneumoniae_subsp._pneumoniae_1084 1 1
Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 4 4
Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 2 2
Klebsiella_pneumoniae_subsp._rhinoscleromatis_SB3432 1 1
Enterobacter_aerogenes_EA1509E 1 1
Escherichia_coli_O104:H4_str._2009EL-2050 1 1
Escherichia_coli_O104:H4_str._2009EL-2071 1 1
Escherichia_coli_O104:H4_str._2011C-3493 1 1
Escherichia_coli_042 1 1
Escherichia_coli_UMNK88 2 2
Escherichia_coli_ABU_83972 1 1
Escherichia_coli_KO11FL 1 1
Escherichia_coli_KO11FL 1 1
Escherichia_coli_LF82 1 1
Escherichia_coli_ED1a 1 1
Escherichia_coli_55989 1 1
Escherichia_coli_W 1 1
Escherichia_coli_W 1 1
Escherichia_coli_APEC_O1 2 2
Escherichia_coli_HS 1 1
Escherichia_coli_O26:H11_str._11368 1 1
Escherichia_coli_CFT073 1 1
Enterobacter_cloacae_EcWSU1 1 1
Enterobacter_cloacae_subsp._cloacae_ENHKU01 1 1
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 1 1
Pseudomonas_syringae_pv._phaseolicola_1448A 1 1
Pseudomonas_stutzeri_CCUG_29243 1 1
Pseudomonas_stutzeri_DSM_4166 1 1
Pseudomonas_stutzeri_RCH2 1 1
Pseudomonas_stutzeri_ATCC_17588_=_LMG_11199 1 1
Pseudomonas_monteilii_SB3101 1 1
Pseudomonas_monteilii_SB3078 1 1
Pseudomonas_putida_NBRC_14164 2 2
Pseudomonas_putida_S16 1 1
Pseudomonas_putida_W619 1 1
Pseudomonas_putida_GB-1 1 1
Pseudomonas_protegens_CHA0 1 1
Pseudomonas_fluorescens_Pf0-1 1 1
Acinetobacter_sp.__SH024 1 1
Acinetobacter_lwoffii__SH145 1 1
Francisella_tularensis_subsp._holarctica_F92 1 1
Francisella_tularensis_subsp._holarctica_FTNF002-00 1 1
Francisella_tularensis_subsp._holarctica_OSU18 1 1
Francisella_tularensis_subsp._holarctica_LVS 1 1
Francisella_tularensis_subsp._holarctica_FSC200 1 1
Francisella_tularensis_subsp._tularensis_TIGB03 1 1
Francisella_tularensis_subsp._tularensis_TI0902 1 1
Francisella_tularensis_subsp._tularensis_NE061598 1 1
Francisella_tularensis_subsp._tularensis_FSC198 1 1
Francisella_tularensis_subsp._tularensis_SCHU_S4 1 1
Francisella_cf._novicida_Fx1 1 1
Candidatus_Nitrososphaera_gargensis_Ga9.2 1 1
Candidatus_Nitrosoarchaeum_koreensis_Candidatus_Nitrosopumilus_koreensis_AR1 2 1
Aeropyrum_camini_SY1_=_JCM_12091 4 3
Sulfolobus_acidocaldarius_SUSAZ 1 1
Methanomethylovorans_hollandica_DSM_15978 3 3
Methanolobus_psychrophilus_R15 2 2
Methanosarcina_mazei_Tuc01 2 2
Methanoregula_formicica_Methanoregula_formicicum_SMSP 1 1
Archaeoglobus_sulfaticallidus_PM70-1 1 1
Thermococcus_sp._AM4 1 1
Thermococcus_sp._CL1 3 1
Thermococcus_litoralis_DSM_5473 1 1
Pyrococcus_sp._NA2 1 1
Pyrococcus_furiosus_DSM_3638 1 1
Candidatus_Methanomethylophilus_alvus_Mx1201 1 1
Candidatus_Methanomassiliicoccus_intestinalis_Issoire-Mx1 1 1
Halovivax_ruber_XH-70 4 4
Natrinema_pellirubrum_DSM_15624 6 6
Natronococcus_occultus_SP4 2 2
Natronobacterium_gregoryi_SP2 7 5
Haloquadratum_walsbyi_C23 2 2
Halorhabdus_tiamatea_SARL4B 6 6
Natronomonas_moolapensis_8.8.11 4 4
Haloarcula_hispanica_N601 4 4
Methanococcus_maripaludis_C6 1 1
Methanococcus_maripaludis_C7 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   23 21
Pan_troglodytes_69_2.1.4   (Chimpanzee)   27 25
Gorilla_gorilla_69_3.1   (Western gorilla)   29 27
Pongo_abelii_69_2   (Sumatran orangutan)   22 20
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   26 24
Macaca_mulatta_69_1   (Rhesus monkey)   29 27
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   33 30
Otolemur_garnettii_69_3   (Small-eared galago)   36 35
Microcebus_murinus_69_1   (Gray mouse lemur)   19 17
Rattus_norvegicus_69_3.4   (Norway rat)   33 33
Mus_musculus_69_38   (House mouse)   35 33
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   26 24
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   35 32
Cavia_porcellus_69_3   (Domestic guinea pig)   21 19
Oryctolagus_cuniculus_69_2   (Rabbit)   31 29
Ochotona_princeps_69   (American pika)   18 17
Tupaia_belangeri_69   (Northern tree shrew)   23 20
Sus_scrofa_69_10.2   (Pig)   36 35
Bos_taurus_69_3.1   (Cattle)   32 31
Vicugna_pacos_69_1   (Alpaca)   19 18
Tursiops_truncatus_69_1   (Bottlenose dolphin)   18 17
Mustela_putorius_furo_69_1.0   (Domestic ferret)   25 24
Ailuropoda_melanoleuca_69_1   (Giant panda)   27 25
Canis_familiaris_69_3.1   (Dog)   27 25
Felis_catus_69   (Domestic cat)   14 12
Equus_caballus_69_2   (Horse)   34 32
Myotis_lucifugus_69_2.0   (Little brown bat)   24 21
Pteropus_vampyrus_69_1   (Large flying fox)   20 18
Sorex_araneus_69_1   (European shrew)   14 14
Erinaceus_europaeus_69   (Western European hedgehog)   15 14
Procavia_capensis_69_1   (Cape rock hyrax)   12 11
Loxodonta_africana_69_3   (African savanna elephant)   28 25
Echinops_telfairi_69   (Small Madagascar hedgehog)   24 23
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   19 17
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   12 10
Macropus_eugenii_69_1.0   (Tammar wallaby)   23 21
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   25 22
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   55 52
Ornithorhynchus_anatinus_69_5   (Platypus)   36 33
Petromyzon_marinus_69_7.0   (Sea lamprey)   16 16
Meleagris_gallopavo_69_2   (Turkey)   33 32
Gallus_gallus_69_2   (Chicken)   27 26
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   25 25
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   29 28
Anolis_carolinensis_69_2.0   (Green anole)   31 30
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   37 35
Latimeria_chalumnae_69_1   (Coelacanth)   94 89
Gadus_morhua_69_1   (Atlantic cod)   34 32
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   44 42
Takifugu_rubripes_69_4   (Torafugu)   38 35
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   41 38
Oryzias_latipes_69_1   (Japanese medaka)   45 44
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   46 46
Oreochromis_niloticus_69_1.0   (Nile tilapia)   60 53
Danio_rerio_69_9   (Zebrafish)   59 56
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   24 20
Ciona_intestinalis_69   (Vase tunicate)   25 23
Drosophila_melanogaster_69_5   (Fruit fly)   13 12
Caenorhabditis_elegans_69_215   (Roundworm)   15 13
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   6 5
Arabidopsis_thaliana_10   (Thale cress)   25 24

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   114 108
Homo_sapiens__(NCBI_version)   (Human)   39 37
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   33 31
Heliconius_numata__(Incomplete) 7 7
Loa_loa_v3.3_(Request)   (Eye worm)   11 10
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   13 13
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   7 5
Moniliophthora_perniciosa_FA553__(Genome_survey) 9 9
Lotus_japonicus__(Early_assembly) 27 22
Malus_x_domestica_(Duplicate)   (Apple)   36 34
Ricinus_communis__(Early_assembly)   (Castor bean)   17 15
Nicotiana_benthamiana_0.4.4_(Early_draft) 35 33
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   19 17
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   22 18
Phoenix_dactylifera__(Early_draft)   (Date palm)   16 13
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 3 3
NCBI_plasmid_sequences_(Plasmids) 174 174
Core_Eukaryotic_Genes_458_(CEGMA) 4 3
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 65 65
UniProt__viral_sequences_(Viral) 112 109
Protein_Data_Bank_(all_PDB_sequenc) 120 120
TargetDB__(Targets) 75 69
Protozoadb_2010_08_(Protozoadb) 326 264
PDB_chains_(SCOP_1.75)_(PDB) 8 8
STRING_v9.0.5_(STRING) 2838 2614
Uniprot_2018_03_genome 45295 42225
NCBI_2017_08_genome 91115 87649
NCBI_viral_sequences_(Viral) 108 104

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.