SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for Type I dockerin domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Type I dockerin domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Amphimedon_queenslandica 1 1
Trichoplax_adhaerens_ 1 1
Proterospongia_sp._ATCC_50818_ 5 5
Monosiga_brevicollis_ 3 2
Gloeobacter_violaceus_PCC_7421 6 6
Nostoc_sp._PCC_7524 1 1
Anabaena_sp._90 1 1
Eggerthella_lenta_DSM_2243 1 1
Microbacterium_testaceum_StLB037 1 1
Truepera_radiovictrix_DSM_17093 1 1
Deinococcus_gobiensis_I-0 1 1
Deinococcus_deserti_VCD115 1 1
Deinococcus_maricopensis_DSM_21211 1 1
Deinococcus_geothermalis_DSM_11300 1 1
Deinococcus_proteolyticus_MRP 1 1
Deinococcus_radiodurans_R1 1 1
Erysipelothrix_rhusiopathiae_str._Fujisawa 1 1
Clostridium_clariflavum_DSM_19732 81 79
Clostridium_cellulolyticum_H10 62 62
Clostridium_thermocellum_ATCC_27405 73 71
Ruminococcus_bromii 27 26
Ruminococcus_albus_7 60 60
Desulfotomaculum_acetoxidans_DSM_771 10 10
Acetobacterium_woodii_DSM_1030 1 1
Eubacterium_eligens_ATCC_27750 1 1
Eubacterium_limosum_KIST612 5 5
Clostridium_difficile_630 1 1
Clostridium_saccharolyticum_WM1 1 1
Clostridium_lentocellum_DSM_5427 1 1
[Ruminococcus]_obeum 1 1
Eubacterium_rectale_M104/1 1 1
Eubacterium_rectale_ATCC_33656 1 1
Roseburia_hominis_A2-183 1 1
Butyrivibrio_fibrisolvens 1 1
Candidatus_Arthromitus_sp._SFB-mouse-Japan 1 1
Clostridium_sp._BNL1100 72 72
Clostridium_perfringens_ATCC_13124 4 4
Clostridium_cellulovorans_743B 45 44
Clostridium_acetobutylicum_ATCC_824 10 10
Lactobacillus_casei_ATCC_334 1 1
Lactobacillus_rhamnosus_Lc_705 1 1
Paenibacillus_sp._JDR-2 8 8
Paenibacillus_mucilaginosus_3016 9 9
Bacillus_selenitireducens_MLS10 1 1
Oceanobacillus_iheyensis_HTE831 2 2
Bacillus_thuringiensis_str._Al_Hakam 2 2
Bacillus_cereus_03BB102 2 2
Candidatus_Cloacamonas_acidaminovorans 1 1
Melioribacter_roseus_P3M 1 1
Ignavibacterium_album_JCM_16511 7 7
Haliscomenobacter_hydrossis_DSM_1100 18 18
Salinibacter_ruber_M8 1 1
Parabacteroides_distasonis_ATCC_8503 1 1
Prevotella_melaninogenica_ATCC_25845 1 1
Bacteroides_helcogenes_P_36-108 1 1
Bacteroides_thetaiotaomicron_VPI-5482 1 1
Bacteroides_fragilis_YCH46 1 1
Robiginitalea_biformata_HTCC2501 1 1
Ornithobacterium_rhinotracheale_DSM_15997 1 1
Capnocytophaga_canimorsus_Cc5 1 1
Flavobacterium_johnsoniae_UW101 1 1
Phycisphaera_mikurensis_NBRC_102666 1 1
Isosphaera_pallida_ATCC_43644 7 7
Rhodopirellula_baltica_SH_1 18 18
Pirellula_staleyi_DSM_6068 1 1
Opitutus_terrae_PB90-1 1 1
Akkermansia_muciniphila_ATCC_BAA-835 1 1
Elusimicrobium_minutum_Pei191 1 1
Caldisericum_exile_AZM16c01 2 2
Granulicella_mallensis_MP5ACTX8 1 1
Terriglobus_saanensis_SP1PR4 2 2
Desulfobacca_acetoxidans_DSM_11109 1 1
Syntrophobacter_fumaroxidans_MPOB 1 1
Desulfatibacillum_alkenivorans_AK-01 18 18
Desulfococcus_oleovorans_Hxd3 1 1
Geobacter_daltonii_FRC-32 4 4
Geobacter_uraniireducens_Rf4 7 7
Geobacter_sulfurreducens_KN400 4 4
Geobacter_metallireducens_GS-15 1 1
Corallococcus_coralloides_DSM_2259 2 2
Myxococcus_fulvus_HW-1 2 2
Cellvibrio_japonicus_Ueda107 1 1
Shewanella_piezotolerans_WP3 1 1
Pseudoalteromonas_atlantica_T6c 3 3
Glaciecola_sp._4H-3-7+YE-5 1 1
Marinobacter_hydrocarbonoclasticus_ATCC_49840 1 1
Marinobacter_aquaeolei_VT8 1 1
Alteromonas_sp._SN2 2 2
Alteromonas_macleodii_str._'Deep_ecotype' 1 1
Hahella_chejuensis_KCTC_2396 2 2
Methylomicrobium_alcaliphilum 1 1
Methylomonas_methanica_MC09 2 2
Methanocella_conradii_HZ254 1 1
Methanosaeta_harundinacea_6Ac 1 1
Methanosaeta_thermophila_PT 3 3
Methanosaeta_concilii_GP6 8 8
Methanococcoides_burtonii_DSM_6242 1 1
Methanosarcina_acetivorans_C2A 3 3
Methanosarcina_mazei_Go1 1 1
Methanosphaerula_palustris_E1-9c 36 36
Methanospirillum_hungatei_JF-1 4 4
Methanoplanus_petrolearius_DSM_11571 1 1
Methanoculleus_bourgensis_MS2 8 8
Methanoculleus_marisnigri_JR1 1 1
Archaeoglobus_fulgidus_DSM_4304 1 1
Pyrococcus_abyssi_GE5 1 1
Pyrococcus_furiosus_COM1 1 1
Thermoplasmatales_archaeon_BRNA1 2 2
Halopiger_xanaduensis_SH-6 1 1
Haloterrigena_turkmenica_DSM_5511 2 2
Natrialba_magadii_ATCC_43099 2 2
Halogeometricum_borinquense_DSM_11551 2 2
Haloferax_mediterranei_ATCC_33500 2 2
Halomicrobium_mukohataei_DSM_12286 1 1
Halorhabdus_utahensis_DSM_12940 3 3
Haloarcula_hispanica_ATCC_33960 2 2
Haloarcula_marismortui_ATCC_43049 4 4
Halobacterium_salinarum_R1 1 1
Halobacterium_sp._NRC-1 1 1
Methanotorris_igneus_Kol_5 2 2
methanocaldococcus_infernus_ME 3 3
Methanothermococcus_okinawensis_IH1 4 4
Methanococcus_aeolicus_Nankai-3 3 3
Methanococcus_voltae_A3 2 2
Methanococcus_vannielii_SB 1 1
Acholeplasma_laidlawii_PG-8A 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Dactylococcopsis_salina_PCC_8305 2 2
Synechococcus_sp._JA-2-3B'a(2-13) 1 1
Synechococcus_sp._JA-3-3Ab 1 1
Cyanothece_sp._PCC_7822 3 3
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 7 7
Stanieria_cyanosphaera_PCC_7437 1 1
Anabaena_cylindrica_PCC_7122 1 1
Deinococcus_peraridilitoris_DSM_19664 1 1
Erysipelothrix_rhusiopathiae_SY1027 1 1
Clostridium_thermocellum_DSM_1313 78 76
[Clostridium]_stercorarium_Clostridiu_subsp._stercorarium_DSM_8532 1 1
Ruminococcus_champanellensis_18P13 63 62
Clostridium_difficile_BI1 1 1
Clostridium_difficile_R20291 1 1
Clostridium_difficile_CD196 1 1
Clostridium_saccharolyticum_Clostridium_cf._saccharolyticum_K10 1 1
Candidatus_Arthromitus_sp._SFB-rat-Yit 1 1
Candidatus_Arthromitus_sp._SFB-mouse-Yit 1 1
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 8 8
Clostridium_perfringens_str._13 3 3
Clostridium_acetobutylicum_DSM_1731 10 10
Clostridium_acetobutylicum_EA_2018 10 10
Thermoanaerobacterium_saccharolyticum_JW/SL-YS485 1 1
Enterococcus_faecalis_OG1RF 1 1
Enterococcus_faecalis_V583 1 1
Lactobacillus_rhamnosus_LOCK908 1 1
Lactobacillus_rhamnosus_LOCK900 1 1
Lactobacillus_rhamnosus_ATCC_8530 1 1
Lactobacillus_rhamnosus_GG 1 1
Lactobacillus_rhamnosus_GG 1 1
Thermobacillus_composti_KWC4 1 1
Paenibacillus_mucilaginosus_KNP414 9 9
Paenibacillus_mucilaginosus_K02 8 8
Bacillus_toyonensis_BCT-7112 2 2
Bacillus_thuringiensis_MC28 2 2
Bacillus_thuringiensis_serovar_chinensis_CT-43 1 1
Bacillus_thuringiensis_YBT-1518 1 1
Bacillus_thuringiensis_Bt407 1 1
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 1 1
Bacillus_thuringiensis_BMB171 1 1
Bacillus_thuringiensis_serovar_finitimus_YBT-020 1 1
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 1 1
Bacillus_cereus_FRI-35 2 2
Bacillus_cereus_biovar_anthracis_str._CI 2 2
Bacillus_cereus_AH187 1 1
Bacillus_cereus_B4264 1 1
Bacillus_cereus_Q1 1 1
Bacillus_cereus_F837/76 2 2
Bacillus_cereus_NC7401 1 1
Bacillus_cereus_E33L 1 1
Bacillus_cereus_ATCC_14579 1 1
Bacillus_cereus_ATCC_10987 1 1
Salinibacter_ruber_DSM_13855 1 1
Rhodothermus_marinus_SG0.5JP17-172 2 2
Bacteroides_fragilis_638R 1 1
Bacteroides_fragilis_NCTC_9343 1 1
Singulisphaera_acidiphila_DSM_18658 3 3
Desulfocapsa_sulfexigens_DSM_10523 1 1
Geobacter_sulfurreducens_PCA 4 4
Sorangium_cellulosum_So0157-2 1 1
Myxococcus_stipitatus_DSM_14675 1 1
Sulfuricella_denitrificans_skB26 1 1
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 1 1
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 1 1
Alteromonas_macleodii_str._'Ionian_Sea_U8' 1 1
Alteromonas_macleodii_str._'Ionian_Sea_U7' 1 1
Alteromonas_macleodii_str._'Ionian_Sea_U4' 1 1
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 1 1
Alteromonas_macleodii_AltDE1 1 1
Alteromonas_macleodii_str._'English_Channel_673' 1 1
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 1 1
Alteromonas_macleodii_str._'Black_Sea_11' 1 1
Alteromonas_macleodii_ATCC_27126 1 1
Methanolobus_psychrophilus_R15 1 1
Methanosarcina_mazei_Tuc01 1 1
Archaeoglobus_sulfaticallidus_PM70-1 4 4
Thermococcus_litoralis_DSM_5473 1 1
Pyrococcus_sp._NA2 1 1
Pyrococcus_furiosus_DSM_3638 1 1
Candidatus_Methanomethylophilus_alvus_Mx1201 3 3
Candidatus_Methanomassiliicoccus_intestinalis_Issoire-Mx1 9 9
Natronobacterium_gregoryi_SP2 1 1
Halorhabdus_tiamatea_SARL4B 7 7
Haloarcula_hispanica_N601 2 2
Methanococcus_maripaludis_X1 2 2

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number   Proteins
Acholeplasma_laidlawii_PG-8A_(duplicate) 1 1
NCBI_plasmid_sequences_(Plasmids) 22 22
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 69 69
PDB_chains_(SCOP_1.75)_(PDB) 5 5
TargetDB__(Targets) 46 44
Protein_Data_Bank_(all_PDB_sequenc) 47 47
STRING_v9.0.5_(STRING) 349 346
NCBI_2017_08_genome 11161 11071
NCBI_viral_sequences_(Viral) 1 1
Uniprot_2018_03_genome 15933 15737

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]