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Domain combinations for Type I dockerin domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Type I dockerin domain domain in that genome.

Complete genomes
Genome Number Proteins

Amphimedon_queenslandica 1 1

Trichoplax_adhaerens_ 1 1

Proterospongia_sp._ATCC_50818_ 5 5

Monosiga_brevicollis_ 3 2

Gloeobacter_violaceus_PCC_7421 6 6

Nostoc_sp._PCC_7524 1 1

Anabaena_sp._90 1 1

Eggerthella_lenta_DSM_2243 1 1

Microbacterium_testaceum_StLB037 1 1

Truepera_radiovictrix_DSM_17093 1 1

Deinococcus_gobiensis_I-0 1 1

Deinococcus_deserti_VCD115 1 1

Deinococcus_maricopensis_DSM_21211 1 1

Deinococcus_geothermalis_DSM_11300 1 1

Deinococcus_proteolyticus_MRP 1 1

Deinococcus_radiodurans_R1 1 1

Erysipelothrix_rhusiopathiae_str._Fujisawa 1 1

Clostridium_clariflavum_DSM_19732 81 79

Clostridium_cellulolyticum_H10 62 62

Clostridium_thermocellum_ATCC_27405 73 71

Ruminococcus_bromii 27 26

Ruminococcus_albus_7 60 60

Desulfotomaculum_acetoxidans_DSM_771 10 10

Acetobacterium_woodii_DSM_1030 1 1

Eubacterium_eligens_ATCC_27750 1 1

Eubacterium_limosum_KIST612 5 5

Clostridium_difficile_630 1 1

Clostridium_saccharolyticum_WM1 1 1

Clostridium_lentocellum_DSM_5427 1 1

[Ruminococcus]_obeum 1 1

Eubacterium_rectale_M104/1 1 1

Eubacterium_rectale_ATCC_33656 1 1

Roseburia_hominis_A2-183 1 1

Butyrivibrio_fibrisolvens 1 1

Candidatus_Arthromitus_sp._SFB-mouse-Japan 1 1

Clostridium_sp._BNL1100 72 72

Clostridium_perfringens_ATCC_13124 4 4

Clostridium_cellulovorans_743B 45 44

Clostridium_acetobutylicum_ATCC_824 10 10

Lactobacillus_casei_ATCC_334 1 1

Lactobacillus_rhamnosus_Lc_705 1 1

Paenibacillus_sp._JDR-2 8 8

Paenibacillus_mucilaginosus_3016 9 9

Bacillus_selenitireducens_MLS10 1 1

Oceanobacillus_iheyensis_HTE831 2 2

Bacillus_thuringiensis_str._Al_Hakam 2 2

Bacillus_cereus_03BB102 2 2

Candidatus_Cloacamonas_acidaminovorans 1 1

Melioribacter_roseus_P3M 1 1

Ignavibacterium_album_JCM_16511 7 7

Haliscomenobacter_hydrossis_DSM_1100 18 18

Salinibacter_ruber_M8 1 1

Parabacteroides_distasonis_ATCC_8503 1 1

Prevotella_melaninogenica_ATCC_25845 1 1

Bacteroides_helcogenes_P_36-108 1 1

Bacteroides_thetaiotaomicron_VPI-5482 1 1

Bacteroides_fragilis_YCH46 1 1

Robiginitalea_biformata_HTCC2501 1 1

Ornithobacterium_rhinotracheale_DSM_15997 1 1

Capnocytophaga_canimorsus_Cc5 1 1

Flavobacterium_johnsoniae_UW101 1 1

Phycisphaera_mikurensis_NBRC_102666 1 1

Isosphaera_pallida_ATCC_43644 7 7

Rhodopirellula_baltica_SH_1 18 18

Pirellula_staleyi_DSM_6068 1 1

Opitutus_terrae_PB90-1 1 1

Akkermansia_muciniphila_ATCC_BAA-835 1 1

Elusimicrobium_minutum_Pei191 1 1

Caldisericum_exile_AZM16c01 2 2

Granulicella_mallensis_MP5ACTX8 1 1

Terriglobus_saanensis_SP1PR4 2 2

Desulfobacca_acetoxidans_DSM_11109 1 1

Syntrophobacter_fumaroxidans_MPOB 1 1

Desulfatibacillum_alkenivorans_AK-01 18 18

Desulfococcus_oleovorans_Hxd3 1 1

Geobacter_daltonii_FRC-32 4 4

Geobacter_uraniireducens_Rf4 7 7

Geobacter_sulfurreducens_KN400 4 4

Geobacter_metallireducens_GS-15 1 1

Corallococcus_coralloides_DSM_2259 2 2

Myxococcus_fulvus_HW-1 2 2

Cellvibrio_japonicus_Ueda107 1 1

Shewanella_piezotolerans_WP3 1 1

Pseudoalteromonas_atlantica_T6c 3 3

Glaciecola_sp._4H-3-7+YE-5 1 1

Marinobacter_hydrocarbonoclasticus_ATCC_49840 1 1

Marinobacter_aquaeolei_VT8 1 1

Alteromonas_sp._SN2 2 2

Alteromonas_macleodii_str._'Deep_ecotype' 1 1

Hahella_chejuensis_KCTC_2396 2 2

Methylomicrobium_alcaliphilum 1 1

Methylomonas_methanica_MC09 2 2

Methanocella_conradii_HZ254 1 1

Methanosaeta_harundinacea_6Ac 1 1

Methanosaeta_thermophila_PT 3 3

Methanosaeta_concilii_GP6 8 8

Methanococcoides_burtonii_DSM_6242 1 1

Methanosarcina_acetivorans_C2A 3 3

Methanosarcina_mazei_Go1 1 1

Methanosphaerula_palustris_E1-9c 36 36

Methanospirillum_hungatei_JF-1 4 4

Methanoplanus_petrolearius_DSM_11571 1 1

Methanoculleus_bourgensis_MS2 8 8

Methanoculleus_marisnigri_JR1 1 1

Archaeoglobus_fulgidus_DSM_4304 1 1

Pyrococcus_abyssi_GE5 1 1

Pyrococcus_furiosus_COM1 1 1

Thermoplasmatales_archaeon_BRNA1 2 2

Halopiger_xanaduensis_SH-6 1 1

Haloterrigena_turkmenica_DSM_5511 2 2

Natrialba_magadii_ATCC_43099 2 2

Halogeometricum_borinquense_DSM_11551 2 2

Haloferax_mediterranei_ATCC_33500 2 2

Halomicrobium_mukohataei_DSM_12286 1 1

Halorhabdus_utahensis_DSM_12940 3 3

Haloarcula_hispanica_ATCC_33960 2 2

Haloarcula_marismortui_ATCC_43049 4 4

Halobacterium_salinarum_R1 1 1

Halobacterium_sp._NRC-1 1 1

Methanotorris_igneus_Kol_5 2 2

methanocaldococcus_infernus_ME 3 3

Methanothermococcus_okinawensis_IH1 4 4

Methanococcus_aeolicus_Nankai-3 3 3

Methanococcus_voltae_A3 2 2

Methanococcus_vannielii_SB 1 1

Acholeplasma_laidlawii_PG-8A 1 1

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Others
Genome Number Proteins

Acholeplasma_laidlawii_PG-8A_(duplicate) 1 1

NCBI_plasmid_sequences_(Plasmids) 22 22

PDB_chains_(SCOP_1.75)_(PDB) 5 5

TargetDB__(Targets) 46 44

Protein_Data_Bank_(all_PDB_sequenc) 47 47

STRING_v9.0.5_(STRING) 349 346

NCBI_2017_08_genome 11161 11071

NCBI_viral_sequences_(Viral) 1 1

Uniprot_2018_03_genome 15933 15737

SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 69 69

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Domain combinations for Type I dockerin domain superfamily in groups of genomes