SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for SAND domain-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a SAND domain-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   39 39
Pan_troglodytes_76_2.1.4   (Chimpanzee)   13 13
Gorilla_gorilla_76_3.1   (Western gorilla)   15 15
Pongo_abelii_76_2   (Sumatran orangutan)   12 12
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   8 8
Papio_anubis_76   (Olive baboon)   12 12
Macaca_mulatta_76_1   (Rhesus monkey)   12 12
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   31 31
Otolemur_garnettii_76_3   (Small-eared galago)   14 14
Microcebus_murinus_76_1   (Gray mouse lemur)   10 10
Rattus_norvegicus_76_5.0   (Norway rat)   13 13
Mus_musculus_76_38   (House mouse)   40 40
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   8 8
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   10 10
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   7 7
Cavia_porcellus_76_3   (Domestic guinea pig)   9 9
Oryctolagus_cuniculus_76_2   (Rabbit)   8 8
Ochotona_princeps_76   (American pika)   7 7
Tupaia_belangeri_76   (Northern tree shrew)   8 8
Sus_scrofa_76_10.2   (Pig)   8 8
Bos_taurus_76_3.1   (Cattle)   9 9
Ovis_aries_76_3.1   (Sheep)   13 13
Vicugna_pacos_76_1   (Alpaca)   7 7
Tursiops_truncatus_76_1   (Bottlenose dolphin)   9 9
Mustela_putorius_furo_76_1.0   (Domestic ferret)   10 10
Ailuropoda_melanoleuca_76_1   (Giant panda)   11 11
Canis_familiaris_76_3.1   (Dog)   13 13
Felis_catus_76_6.2   (Domestic cat)   10 10
Equus_caballus_76_2   (Horse)   10 10
Myotis_lucifugus_76_2.0   (Little brown bat)   7 7
Pteropus_vampyrus_76_1   (Large flying fox)   11 11
Sorex_araneus_76_1   (European shrew)   3 3
Erinaceus_europaeus_76   (Western European hedgehog)   3 3
Procavia_capensis_76_1   (Cape rock hyrax)   8 8
Loxodonta_africana_76_3   (African savanna elephant)   21 21
Echinops_telfairi_76   (Small Madagascar hedgehog)   7 7
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   13 13
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   4 4
Macropus_eugenii_76_1.0   (Tammar wallaby)   5 5
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   10 10
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   11 10
Ornithorhynchus_anatinus_76_5   (Platypus)   8 8
Saccoglossus_kowalevskii_v3.0 7 7
Petromyzon_marinus_76_7.0   (Sea lamprey)   3 3
Meleagris_gallopavo_76_2   (Turkey)   7 7
Gallus_gallus_76_4   (Chicken)   6 6
Anas_platyrhynchos_76_1.0   (Mallard)   7 7
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   6 6
Ficedula_albicollis_76_1.0   (Collared flycatcher)   7 7
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   6 6
Anolis_carolinensis_76_2.0   (Green anole)   6 6
Xenopus_laevis_   (African clawed frog)   12 12
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   9 8
Latimeria_chalumnae_76_1   (Coelacanth)   16 15
Lepisosteus_oculatus_76   (Spotted gar)   15 13
Gadus_morhua_76_1   (Atlantic cod)   12 12
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   13 13
Takifugu_rubripes_76_4   (Torafugu)   36 35
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   12 11
Oryzias_latipes_76_1   (Japanese medaka)   9 9
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   11 10
Poecilia_formosa_76   (Amazon molly)   13 12
Oreochromis_niloticus_76_1.0   (Nile tilapia)   15 14
Astyanax_mexicanus_76   (Mexican tetra)   13 13
Danio_rerio_76_9   (Zebrafish)   31 28
Oikopleura_dioica 2 2
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   3 3
Ciona_intestinalis_76   (Vase tunicate)   3 3
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   4 4
Adineta_vaga 9 9
Octopus_bimaculoides_280 6 6
Crassostrea_gigas_22   (Pacific oyster)   7 7
Lottia_gigantea_   (Owl limpet)   7 7
Helobdella_robusta_ 5 5
Capitella_sp._I_ 7 7
Danaus_plexippus_OGS1.0   (Monarch butterfly)   3 3
Heliconius_melpomene_   (Postman butterfly)   3 3
Bombyx_mori_   (Domestic silkworm)   3 3
Nasonia_vitripennis_   (Jewel wasp)   3 3
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   4 4
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   3 3
Linepithema_humile_v1.1   (Argentine ant)   3 3
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   3 3
Solenopsis_invicta_v.2.2.3   (Red fire ant)   3 3
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   3 3
Atta_cephalotes_v1.1 3 3
Camponotus_floridanus_v3.3   (Florida carpenter ant)   3 3
Lucilia_cuprina   (Australian sheep blowfly)   3 3
Drosophila_grimshawi_1.3 3 3
Drosophila_willistoni_1.3 3 3
Drosophila_pseudoobscura_2.13 3 3
Drosophila_persimilis_1.3 2 2
Drosophila_suzukii 3 3
Drosophila_yakuba_1.3 4 4
Drosophila_simulans_1.3 3 3
Drosophila_sechellia_1.3 3 3
Drosophila_melanogaster_76_5   (Fruit fly)   11 11
Drosophila_erecta_1.3 3 3
Drosophila_ananassae_1.3 3 3
Drosophila_virilis_1.2 3 3
Drosophila_mojavensis_1.3 3 3
Megaselia_scalaris_22 2 2
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   4 4
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   3 3
Anopheles_darlingi_22   (American malaria mosquito)   3 3
Anopheles_gambiae_49_3j   (African malaria mosquito)   3 3
Tribolium_castaneum_3.0   (Red flour beetle)   3 3
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   3 3
Acyrthosiphon_pisum_   (Pea aphid)   3 3
Rhodnius_prolixus_22 3 3
Daphnia_pulex_   (Common water flea)   2 2
Strigamia_maritima_22 5 5
Sarcoptes_scabiei 2 2
Tetranychus_urticae_   (Two-spotted spider mite)   1 1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   2 2
Pristionchus_pacificus_ 2 2
Meloidogyne_incognita_   (Southern root-knot nematode)   2 2
Meloidogyne_hapla_ 2 2
Onchocerca_volvulus_22 2 2
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   3 3
Caenorhabditis_japonica_ 4 4
Caenorhabditis_brenneri_ 4 4
Caenorhabditis_remanei_ 4 4
Caenorhabditis_elegans_76_235   (Roundworm)   5 5
Caenorhabditis_briggsae_2 4 4
Trichinella_spiralis_22 1 1
Hymenolepis_microstoma_ 2 2
Echinococcus_multilocularis_ 2 2
Echinococcus_granulosus_ 2 2
Taenia_solium_   (Pork tapeworm)   2 2
Schistosoma_mansoni_ 3 3
Mnemiopsis_leidyi   (Sea walnut)   3 3
Thelohanellus_kitauei 1 1
Acropora_digitifera_v1.0 3 3
Nematostella_vectensis_1.0   (Starlet sea anemone)   2 2
Hydra_vulgaris 2 2
Amphimedon_queenslandica 2 2
Trichoplax_adhaerens_ 2 2
Fusarium_oxysporum_f._sp._lycopersici_4286_ 1 1
Capsella_rubella_v183 1 1
Arabidopsis_lyrata_   (Lyrate rockcress)   1 1
Arabidopsis_thaliana_10   (Thale cress)   1 1
Medicago_truncatula_   (Barrel medic)   4 4
Actinidia_chinensis_Hongyang_ 1 1
Triticum_aestivum_22   (Bread wheat)   1 1
Oryza_brachyantha_22   (Malo sina)   1 1
Coccomyxa_subellipsoidea_sp._C-169_v2 1 1
Asterochloris_sp._Cgr/DA1pho_v1.0 1 1
Chlorella_vulgaris_ 1 1
Volvox_carteri_f._nagariensis_ 6 5
Volvox_carteri_v199 3 3
Chlamydomonas_reinhardtii_4.0 2 1
Ostreococcus_sp._RCC809_ 2 2
Ostreococcus_lucimarinus_CCE9901_ 1 1
Ostreococcus_tauri_ 3 3
Bathycoccus_prasinos_ 2 2
Micromonas_sp._RCC299_ 3 3
Micromonas_pusilla_CCMP1545_v3.0 2 2

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   18 14
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   9 9
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   3 3
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   2 2
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   5 5

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   12 12
Pan_troglodytes_69_2.1.4   (Chimpanzee)   11 11
Gorilla_gorilla_69_3.1   (Western gorilla)   12 12
Pongo_abelii_69_2   (Sumatran orangutan)   11 11
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   8 8
Macaca_mulatta_69_1   (Rhesus monkey)   9 9
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   11 11
Otolemur_garnettii_69_3   (Small-eared galago)   13 13
Microcebus_murinus_69_1   (Gray mouse lemur)   10 10
Rattus_norvegicus_69_3.4   (Norway rat)   9 9
Mus_musculus_69_38   (House mouse)   12 12
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   8 8
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   9 9
Cavia_porcellus_69_3   (Domestic guinea pig)   9 9
Oryctolagus_cuniculus_69_2   (Rabbit)   7 7
Ochotona_princeps_69   (American pika)   7 7
Tupaia_belangeri_69   (Northern tree shrew)   8 8
Sus_scrofa_69_10.2   (Pig)   8 8
Bos_taurus_69_3.1   (Cattle)   9 9
Vicugna_pacos_69_1   (Alpaca)   7 7
Tursiops_truncatus_69_1   (Bottlenose dolphin)   9 9
Mustela_putorius_furo_69_1.0   (Domestic ferret)   10 10
Ailuropoda_melanoleuca_69_1   (Giant panda)   11 11
Canis_familiaris_69_3.1   (Dog)   11 11
Felis_catus_69   (Domestic cat)   7 7
Equus_caballus_69_2   (Horse)   10 10
Myotis_lucifugus_69_2.0   (Little brown bat)   7 7
Pteropus_vampyrus_69_1   (Large flying fox)   11 11
Sorex_araneus_69_1   (European shrew)   3 3
Erinaceus_europaeus_69   (Western European hedgehog)   3 3
Procavia_capensis_69_1   (Cape rock hyrax)   8 8
Loxodonta_africana_69_3   (African savanna elephant)   11 11
Echinops_telfairi_69   (Small Madagascar hedgehog)   7 7
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   9 9
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   4 4
Macropus_eugenii_69_1.0   (Tammar wallaby)   5 5
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   9 9
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   11 10
Ornithorhynchus_anatinus_69_5   (Platypus)   6 6
Petromyzon_marinus_69_7.0   (Sea lamprey)   3 3
Meleagris_gallopavo_69_2   (Turkey)   5 5
Gallus_gallus_69_2   (Chicken)   8 8
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   6 6
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   6 6
Anolis_carolinensis_69_2.0   (Green anole)   6 6
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   9 8
Latimeria_chalumnae_69_1   (Coelacanth)   12 11
Gadus_morhua_69_1   (Atlantic cod)   11 11
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   11 11
Takifugu_rubripes_69_4   (Torafugu)   13 12
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   12 11
Oryzias_latipes_69_1   (Japanese medaka)   9 9
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   11 10
Oreochromis_niloticus_69_1.0   (Nile tilapia)   11 10
Danio_rerio_69_9   (Zebrafish)   19 17
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   2 2
Ciona_intestinalis_69   (Vase tunicate)   3 3
Drosophila_melanogaster_69_5   (Fruit fly)   3 3
Caenorhabditis_elegans_69_215   (Roundworm)   5 5

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   43 43
Homo_sapiens__(NCBI_version)   (Human)   21 21
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   12 12
Heliconius_numata__(Incomplete) 1 1
Loa_loa_v3.3_(Request)   (Eye worm)   3 3
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   2 2
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   2 2
Protein_Data_Bank_(all_PDB_sequenc) 9 9
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 21 21
TargetDB__(Targets) 21 21
UniProt__viral_sequences_(Viral) 1 1
PDB_chains_(SCOP_1.75)_(PDB) 4 4
STRING_v9.0.5_(STRING) 330 326
Uniprot_2018_03_genome 2860 2791
NCBI_2017_08_genome 6223 5978

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]