SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for PX domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a PX domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   186 185
Pan_troglodytes_76_2.1.4   (Chimpanzee)   49 49
Gorilla_gorilla_76_3.1   (Western gorilla)   62 62
Pongo_abelii_76_2   (Sumatran orangutan)   52 52
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   53 53
Papio_anubis_76   (Olive baboon)   58 58
Macaca_mulatta_76_1   (Rhesus monkey)   100 100
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   120 120
Otolemur_garnettii_76_3   (Small-eared galago)   52 52
Microcebus_murinus_76_1   (Gray mouse lemur)   48 48
Rattus_norvegicus_76_5.0   (Norway rat)   55 55
Mus_musculus_76_38   (House mouse)   112 112
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   40 40
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   41 41
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   51 49
Cavia_porcellus_76_3   (Domestic guinea pig)   50 50
Oryctolagus_cuniculus_76_2   (Rabbit)   51 51
Ochotona_princeps_76   (American pika)   40 40
Tupaia_belangeri_76   (Northern tree shrew)   35 35
Sus_scrofa_76_10.2   (Pig)   55 55
Bos_taurus_76_3.1   (Cattle)   50 50
Ovis_aries_76_3.1   (Sheep)   55 55
Vicugna_pacos_76_1   (Alpaca)   33 33
Tursiops_truncatus_76_1   (Bottlenose dolphin)   45 45
Mustela_putorius_furo_76_1.0   (Domestic ferret)   50 50
Ailuropoda_melanoleuca_76_1   (Giant panda)   55 55
Canis_familiaris_76_3.1   (Dog)   62 62
Felis_catus_76_6.2   (Domestic cat)   50 50
Equus_caballus_76_2   (Horse)   55 55
Myotis_lucifugus_76_2.0   (Little brown bat)   50 50
Pteropus_vampyrus_76_1   (Large flying fox)   45 45
Sorex_araneus_76_1   (European shrew)   28 28
Erinaceus_europaeus_76   (Western European hedgehog)   38 38
Procavia_capensis_76_1   (Cape rock hyrax)   42 42
Loxodonta_africana_76_3   (African savanna elephant)   63 63
Echinops_telfairi_76   (Small Madagascar hedgehog)   38 38
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   54 54
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   28 28
Macropus_eugenii_76_1.0   (Tammar wallaby)   41 41
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   61 61
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   51 51
Ornithorhynchus_anatinus_76_5   (Platypus)   41 41
Saccoglossus_kowalevskii_v3.0 40 39
Petromyzon_marinus_76_7.0   (Sea lamprey)   23 23
Meleagris_gallopavo_76_2   (Turkey)   44 44
Gallus_gallus_76_4   (Chicken)   49 49
Anas_platyrhynchos_76_1.0   (Mallard)   45 45
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   49 49
Ficedula_albicollis_76_1.0   (Collared flycatcher)   43 43
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   50 50
Anolis_carolinensis_76_2.0   (Green anole)   48 48
Xenopus_laevis_   (African clawed frog)   77 77
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   62 62
Latimeria_chalumnae_76_1   (Coelacanth)   57 57
Lepisosteus_oculatus_76   (Spotted gar)   65 65
Gadus_morhua_76_1   (Atlantic cod)   59 59
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   69 69
Takifugu_rubripes_76_4   (Torafugu)   136 136
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   79 79
Oryzias_latipes_76_1   (Japanese medaka)   65 65
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   55 55
Poecilia_formosa_76   (Amazon molly)   56 56
Oreochromis_niloticus_76_1.0   (Nile tilapia)   75 75
Astyanax_mexicanus_76   (Mexican tetra)   64 64
Danio_rerio_76_9   (Zebrafish)   101 101
Oikopleura_dioica 17 17
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   36 36
Ciona_intestinalis_76   (Vase tunicate)   21 21
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   31 31
Adineta_vaga 70 70
Octopus_bimaculoides_280 46 46
Crassostrea_gigas_22   (Pacific oyster)   28 28
Lottia_gigantea_   (Owl limpet)   29 29
Helobdella_robusta_ 22 22
Capitella_sp._I_ 33 33
Danaus_plexippus_OGS1.0   (Monarch butterfly)   23 22
Heliconius_melpomene_   (Postman butterfly)   21 21
Bombyx_mori_   (Domestic silkworm)   16 16
Nasonia_vitripennis_   (Jewel wasp)   19 19
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   29 29
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   23 23
Linepithema_humile_v1.1   (Argentine ant)   22 22
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   21 21
Solenopsis_invicta_v.2.2.3   (Red fire ant)   19 19
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   23 23
Atta_cephalotes_v1.1 21 21
Camponotus_floridanus_v3.3   (Florida carpenter ant)   23 23
Lucilia_cuprina   (Australian sheep blowfly)   13 13
Drosophila_grimshawi_1.3 17 17
Drosophila_willistoni_1.3 16 16
Drosophila_pseudoobscura_2.13 16 16
Drosophila_persimilis_1.3 16 16
Drosophila_suzukii 19 18
Drosophila_yakuba_1.3 17 17
Drosophila_simulans_1.3 15 15
Drosophila_sechellia_1.3 14 14
Drosophila_melanogaster_76_5   (Fruit fly)   31 31
Drosophila_erecta_1.3 16 16
Drosophila_ananassae_1.3 16 16
Drosophila_virilis_1.2 16 16
Drosophila_mojavensis_1.3 16 16
Megaselia_scalaris_22 5 5
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   22 22
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   18 18
Anopheles_darlingi_22   (American malaria mosquito)   16 16
Anopheles_gambiae_49_3j   (African malaria mosquito)   19 18
Tribolium_castaneum_3.0   (Red flour beetle)   22 22
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   21 21
Acyrthosiphon_pisum_   (Pea aphid)   15 15
Rhodnius_prolixus_22 17 17
Daphnia_pulex_   (Common water flea)   18 18
Strigamia_maritima_22 25 25
Sarcoptes_scabiei 13 13
Tetranychus_urticae_   (Two-spotted spider mite)   16 16
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   24 24
Pristionchus_pacificus_ 10 10
Meloidogyne_incognita_   (Southern root-knot nematode)   15 14
Meloidogyne_hapla_ 8 8
Onchocerca_volvulus_22 13 13
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   18 18
Caenorhabditis_japonica_ 13 12
Caenorhabditis_brenneri_ 26 24
Caenorhabditis_remanei_ 16 15
Caenorhabditis_elegans_76_235   (Roundworm)   28 27
Caenorhabditis_briggsae_2 16 15
Trichinella_spiralis_22 14 14
Hymenolepis_microstoma_ 10 10
Echinococcus_multilocularis_ 11 11
Echinococcus_granulosus_ 11 11
Taenia_solium_   (Pork tapeworm)   9 9
Schistosoma_mansoni_ 7 7
Mnemiopsis_leidyi   (Sea walnut)   19 19
Thelohanellus_kitauei 2 2
Acropora_digitifera_v1.0 31 31
Nematostella_vectensis_1.0   (Starlet sea anemone)   38 38
Hydra_vulgaris 23 23
Amphimedon_queenslandica 37 37
Trichoplax_adhaerens_ 21 21
Proterospongia_sp._ATCC_50818_ 30 30
Monosiga_brevicollis_ 24 24
Sphaeroforma_arctica_JP610_ 29 29
Capsaspora_owczarzaki_ATCC_30864_ 43 42
Conidiobolus_coronatus_NRRL28638_v1.0 15 15
Mortierella_verticillata_NRRL_6337_ 24 23
Phycomyces_blakesleeanus_ 29 29
Rhizopus_oryzae_RA_99-880_ 25 25
Mucor_circinelloides_ 27 27
Rhizomucor_miehei_CAU432_ 28 28
Malassezia_globosa_CBS_7966_ 18 18
Sporisorium_reilianum_22 14 14
Ustilago_maydis_ 14 14
Mixia_osmundae_IAM_14324_v1.0 14 14
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 15 15
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 18 18
Melampsora_laricis-populina_ 15 15
Rhodotorula_graminis_WP1_v1.0 14 14
Sporobolomyces_roseus_IAM_13481_ 12 12
Microbotryum_violaceum_22 16 16
Wallemia_sebi_v1.0 11 11
Sphaerobolus_stellatus_v1.0 15 15
Piloderma_croceum_F_1598_v1.0 18 18
Serpula_lacrymans_var._lacrymans_S7.9_ 13 13
Coniophora_puteana 13 13
Hydnomerulius_pinastri_v2.0 15 15
Paxillus_rubicundulus_Ve08.2h10_v1.0 14 14
Pisolithus_microcarpus_441_v1.0 13 13
Pisolithus_tinctorius_Marx_270_v1.0 14 14
Scleroderma_citrinum_Foug_A_v1.0 15 15
Coprinopsis_cinerea_okayama7_130_v3 15 15
Pleurotus_ostreatus_   (Oyster mushroom)   12 12
Amanita_thiersii_Skay4041_v1.0 14 14
Amanita_muscaria_Koide_v1.0   (Fly agaric)   13 13
Galerina_marginata_v1.0 17 17
Hebeloma_cylindrosporum_h7_v2.0 17 17
Laccaria_bicolor_S238N-H82_ 17 17
Agaricus_bisporus_var._bisporus_ 16 16
Schizophyllum_commune_ 13 13
Stereum_hirsutum_FP-91666_SS1__v1.0 15 15
Heterobasidion_annosum_ 12 12
Gloeophyllum_trabeumv1.0 14 14
Punctularia_strigosozonata_v1.0 12 12
Sebacina_vermifera_MAFF_305830_v1.0 15 15
Fomitiporia_mediterranea_v1.0 13 13
Tulasnella_calospora_AL13/4D_v1.0 14 14
Postia_placenta_ 19 19
Wolfiporia_cocos_MD-104_SS10__v1.0 14 14
Fomitopsis_pinicolav1.0 17 17
Fomitopsis_pinicola_FP-58527_SS1_v3.0 17 17
Phanerochaete_chrysosporium_RP-78_2.1 14 14
Dichomitus_squalens 14 14
Trametes_versicolor_v1.0 15 15
Tremella_mesenterica_   (Witches' butter)   12 12
Daldinia_eschscholzii_EC12_v1.0 13 13
Apiospora_montagnei_NRRL_25634_v1.0 13 13
Magnaporthe_poae_ATCC_64411_22 9 9
Magnaporthe_grisea_70-15_ 13 13
Podospora_anserina_ 13 13
Sporotrichum_thermophile_ATCC_42464_ 12 12
Thielavia_terrestris_NRRL_8126_ 13 13
Chaetomium_globosum_CBS_148.51_ 12 12
Neurospora_tetrasperma_ 13 13
Neurospora_discreta_FGSC_8579_ 13 13
Neurospora_crassa_OR74A_ 13 13
Cryphonectria_parasitica_   (Chestnut blight fungus)   13 13
Verticillium_albo-atrum_VaMs.102_ 12 12
Verticillium_dahliae_VdLs.17_ 12 12
Acremonium_alcalophilumv_1.0 14 14
Glomerella_graminicola_22 13 13
Fusarium_graminearum_ 12 12
Nectria_haematococca_mpVI_ 15 15
Fusarium_oxysporum_f._sp._lycopersici_4286_ 13 13
Fusarium_verticillioides_7600_ 14 14
Trichoderma_asperellum_CBS_433.97_v1.0 13 13
Trichoderma_atroviride_ 13 13
Trichoderma_citrinoviride_v1.0 13 13
Trichoderma_reesei_1.2 13 13
Trichoderma_virens_Gv29-8_ 13 13
Trichoderma_longibrachiatum_ATCC_18648_v1.0 13 13
Trichoderma_harzianum_CBS_226.95_v1.0 13 13
Amorphotheca_resinae_v1.0   (Creosote fungus)   13 13
Botrytis_cinerea_B05.10_ 10 10
Sclerotinia_sclerotiorum_ 13 13
Blumeria_graminis_22 13 13
Didymella_exigua_CBS_183.55_v1.0 13 13
Leptosphaeria_maculans_22 12 12
Setosphaeria_turcica_v1.0 13 13
Cochliobolus_miyabeanus_ATCC_44560_v1.0 13 13
Cochliobolus_victoriae_FI3_v1.0 13 13
Cochliobolus_carbonum_26-R-13_v1.0 13 13
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   13 13
Alternaria_brassicicola_ 12 12
Cochliobolus_lunatus_m118_v2.0 13 13
Pyrenophora_teres_f._teres_22 13 13
Pyrenophora_tritici-repentis_ 13 13
Stagonospora_nodorum_ 13 13
Mycosphaerella_graminicola_IPO323_ 13 13
Zasmidium_cellare_ATCC_36951_v1.0 15 15
Dothistroma_septosporum 14 14
Septoria_musiva_v1.0 13 13
Mycosphaerella_fijiensis_CIRAD86_ 12 12
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 14 14
Paracoccidioides_brasiliensis_Pb18_ 14 14
Coccidioides_posadasii_RMSCC_3488_ 14 14
Coccidioides_immitis_RS_ 14 14
Ajellomyces_dermatitidis_SLH14081_ 13 13
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 14 14
Microsporum_canis_CBS_113480_ 14 14
Trichophyton_equinum_CBS_127.97_ 14 14
Trichophyton_verrucosum_HKI_0517_ 13 13
Arthroderma_benhamiae_CBS_112371_ 13 13
Trichophyton_tonsurans_CBS_112818_ 13 13
Trichophyton_rubrum_CBS_118892_ 14 14
Uncinocarpus_reesii_1704_ 12 12
Aspergillus_zonatus_v1.0 13 13
Penicillium_chrysogenum_Wisconsin_54-1255_ 14 14
Penicillium_chrysogenum_v1.0 14 14
Aspergillus_acidus_v1.0 14 14
Aspergillus_fumigatus_Af293 13 13
Aspergillus_brasiliensis_v1.0 14 14
Aspergillus_nidulans_FGSC_A4_ 15 15
Aspergillus_sydowii_v1.0 14 14
Aspergillus_versicolor_v1.0 14 14
Aspergillus_glaucus 13 13
Aspergillus_carbonarius_ITEM_5010_ 13 13
Neosartorya_fischeri_NRRL_181_ 14 14
Aspergillus_terreus_NIH2624_ 13 13
Aspergillus_tubingensis_v1.0 14 14
Aspergillus_wentii_v1.0 14 14
Aspergillus_oryzae_RIB40_ 13 13
Aspergillus_niger_22 13 13
Aspergillus_niger_ATCC_1015_ 6 6
Aspergillus_flavus_NRRL3357_ 12 12
Aspergillus_clavatus_NRRL_1_ 13 13
Penicillium_marneffei_ATCC_18224_ 13 13
Tuber_melanosporum_Mel28_22 14 14
Tuber_melanosporum_Vittad_   (Perigord truffle)   14 14
Hansenula_polymorpha_v2.0 11 11
Dekkera_bruxellensis_CBS_2499_v2.0 14 14
Pichia_membranifaciensv1.0 13 13
Candida_tanzawaensis_NRRL_Y-17324__v1.0 14 14
Candida_dubliniensis_CD36_ 15 15
Candida_tropicalis_MYA-3404_ 15 15
Candida_parapsilosis_ 13 13
Candida_albicans_SC5314 15 15
Lodderomyces_elongisporus_NRRL_YB-4239_ 14 13
Babjeviella_inositovora_NRRL_Y-12698_v1.0 14 14
Pichia_stipitis_CBS_6054_ 13 13
Candida_guilliermondii_ATCC_6260_ 14 14
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 14 14
Debaromyces_hansenii 13 13
Wickerhamomyces_anomalus 15 15
Pichia_pastoris_GS115_ 13 13
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 10 10
Yarrowia_lipolytica_CLIB122 14 14
Candida_lusitaniae_ATCC_42720_ 13 13
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 13 13
Vanderwaltozyma_polyspora_DSM_70294_ 18 18
Candida_glabrata_CBS138 16 16
Kluyveromyces_thermotolerans_CBS_6340 14 14
Lachancea_kluyveri_ 14 14
Kluyveromyces_waltii 14 14
Ashbya_gossypii_ATCC_10895_ 14 14
Zygosaccharomyces_rouxii_ 13 13
Saccharomyces_mikatae_MIT 15 15
Saccharomyces_paradoxus_MIT 15 15
Saccharomyces_cerevisiae_76   (Baker's yeast)   15 15
Saccharomyces_bayanus_MIT 14 14
Kluyveromyces_lactis 12 12
Schizosaccharomyces_cryophilus_OY26_22 13 13
Schizosaccharomyces_octosporus_yFS286_ 13 13
Schizosaccharomyces_japonicus_yFS275_ 12 12
Schizosaccharomyces_pombe   (Fission yeast)   14 14
Catenaria_anguillulae_PL171_v1.0 10 10
Allomyces_macrogynus_ATCC_38327_ 28 28
Spizellomyces_punctatus_DAOM_BR117_ 17 17
Dictyostelium_discoideum 12 11
Dictyostelium_purpureum_ 9 9
Entamoeba_dispar_1.2 7 7
Entamoeba_invadens_1.2 8 8
Entamoeba_histolytica_1 7 7
Selaginella_moellendorffii_ 11 11
Pinus_taeda   (Loblolly pine)   7 7
Picea_abies   (Norway spruce)   4 4
Eucalyptus_grandis_v201   (Rose gum)   14 14
Theobroma_cacao_B97-61/B2_v1   (Cacao)   7 7
Gossypium_raimondii_v221 50 50
Citrus_clementina_v165 10 10
Citrus_sinensis_v154   (Sweet orange)   9 9
Thellungiella_halophila_v173 7 7
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   13 13
Capsella_rubella_v183 12 12
Arabidopsis_lyrata_   (Lyrate rockcress)   8 8
Arabidopsis_thaliana_10   (Thale cress)   11 11
Carica_papaya_   (Papaya)   6 6
Medicago_truncatula_   (Barrel medic)   20 20
Phaseolus_vulgaris_v186   (French bean)   13 13
Glycine_max_v109   (Soybean)   17 17
Cucumis_sativus_v122   (Cucumber)   13 13
Fragaria_vesca_   (Wild strawberry)   8 8
Malus_domestica_v196   (Apple)   17 17
Prunus_persica_v139   (Peach)   9 9
Linum_usitatissimum_v200   (Flax)   15 15
Manihot_esculenta_v147   (Cassava)   10 10
Populus_trichocarpa_v156   (Black cottonwood)   13 13
Vitis_vinifera_   (Wine grape)   7 7
Mimulus_guttatus_v140   (Spotted monkey flower)   10 10
Solanum_lycopersicum_v.2.3   (Tomato)   10 10
Solanum_tuberosum_   (Potato)   7 7
Actinidia_chinensis_Hongyang_ 13 13
Aquilegia_coerulea_v195 10 10
Triticum_urartu_22 7 7
Triticum_aestivum_22   (Bread wheat)   14 14
Aegilops_tauschii_22 5 5
Brachypodium_distachyon_   (Stiff brome)   11 11
Oryza_barthii_22   (African wild rice)   12 12
Oryza_meridionalis_22 15 15
Oryza_glumaepatula_22 14 14
Oryza_glaberrima   (African rice)   6 6
Oryza_punctata_22 12 12
Oryza_nivara_22 20 20
Oryza_brachyantha_22   (Malo sina)   8 8
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   10 10
Oryza_sativa_v193   (Rice)   10 10
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   11 11
Panicum_virgatum_v202   (Switchgrass)   16 16
Setaria_italica_v164   (Foxtail millet)   11 11
Zea_mays_subsp._mays_   (Maize)   20 20
Zea_mays_v181   (Maize)   21 21
Sorghum_bicolor_   (Sorghum)   8 8
Musa_balbisiana   (Balbis banana)   9 9
Musa_acuminata_22   (Wild Malaysian banana)   12 12
Amborella_trichopoda_22 5 5
Physcomitrella_patens 9 9
Coccomyxa_subellipsoidea_sp._C-169_v2 5 5
Asterochloris_sp._Cgr/DA1pho_v1.0 5 5
Chlorella_variabilis_sp._NC64A_ 4 4
Chlorella_vulgaris_ 4 4
Volvox_carteri_f._nagariensis_ 6 6
Volvox_carteri_v199 6 6
Chlamydomonas_reinhardtii_4.0 5 5
Ostreococcus_sp._RCC809_ 7 7
Ostreococcus_lucimarinus_CCE9901_ 7 7
Ostreococcus_tauri_ 8 8
Bathycoccus_prasinos_ 5 5
Micromonas_sp._RCC299_ 5 5
Micromonas_pusilla_CCMP1545_v3.0 4 4
Cyanidioschyzon_merolae_strain_10D_22 1 1
Cyanidioschyzon_merolae 1 1
Porphyridium_purpureum_02_2012 1 1
Thecamonas_trahens_ATCC_50062_ 32 30
Bigelowiella_natans_CCMP2755_22 40 36
Giardia_lamblia_2.3 7 7
Cyanophora_paradoxa_ 8 7
Leishmania_mexicana_2.4 3 3
Leishmania_major_strain_Friedlin_ 3 3
Leishmania_infantum_JPCM5_2.4 3 3
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 3 3
Trypanosoma_vivax_ 4 4
Trypanosoma_cruzi_strain_CL_Brener 5 5
Trypanosoma_congolense_2.4 5 5
Trypanosoma_brucei_gambiense_v4.1 4 4
Trypanosoma_brucei_TREU927_v4.1 4 4
Ectocarpus_siliculosus 29 29
Aureococcus_anophagefferens_ 16 16
Albugo_laibachii_22 76 75
Pythium_iwayamai_DAOM_BR242034_22 74 74
Pythium_arrhenomanes_ATCC_12531_22 69 69
Pythium_ultimum_v1.7-2 90 89
Pythium_aphanidermatum_DAOM_BR444_22 83 80
Pythium_irregulare_DAOM_BR486_22 90 88
Pythium_vexans_DAOM_BR484_22 77 77
Phytophthora_ramorum_1.1   (Sudden oak death agent)   107 103
Phytophthora_sojae_1.1 102 99
Phytophthora_infestans_T30-4_ 111 110
Phytophthora_capsici_ 86 84
Hyaloperonospora_arabidopsidis_22 74 74
Phaeodactylum_tricornutumCCAP_1055/1 6 6
Fragilariopsis_cylindrus 10 10
Thalassiosira_pseudonana_CCMP1335 9 9
Perkinsus_marinus_ATCC_50983_ 19 18
Paramecium_tetraurelia_ 182 158
Tetrahymena_thermophila_SB210_1_ 56 50
Ichthyophthirius_multifiliis_strain_G5_ 19 18
Cryptosporidium_hominis 3 3
Cryptosporidium_muris 3 3
Cryptosporidium_parvum_Iowa_II 2 2
Neospora_caninum 5 4
Toxoplasma_gondii_VEG 5 4
Toxoplasma_gondii_ME49 5 4
Toxoplasma_gondii_GT1 5 4
Babesia_bovis_T2Bo_ 4 4
Theileria_parva__ 1 1
Theileria_annulata 1 1
Plasmodium_falciparum_3D7_ 2 2
Plasmodium_vivax_SaI-1_7.0 2 2
Plasmodium_knowlesi_strain_H_ 2 2
Plasmodium_yoelii_ssp._yoelii_1_ 1 1
Plasmodium_chabaudi_ 2 2
Plasmodium_berghei_ANKA_ 2 2
Symbiodinium_minutum_clade_B1_v1.2 23 23
Naegleria_gruberi_ 18 18
Trichomonas_vaginalis_ 9 9
Guillardia_theta_CCMP2712_v1.0_ 29 29
Emiliania_huxleyi_CCMP1516_ 34 34

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   97 97
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   26 26
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   20 19
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   13 13
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   19 18
Cryptococcus_neoformans_var._grubii_H99_ 12 12
Cryptococcus_neoformans_B-3501A_ 12 12
Cryptococcus_neoformans_JEC21_ 12 12
Paracoccidioides_brasiliensis_Pb01_ 13 13
Paracoccidioides_brasiliensis_Pb03_ 13 13
Coccidioides_posadasii_str._Silveira_ 14 14
Coccidioides_immitis_RMSCC_3703_ 11 11
Coccidioides_immitis_RMSCC_2394_ 14 14
Coccidioides_immitis_H538.4_ 14 14
Ajellomyces_dermatitidis_ER-3_ 13 13
Histoplasma_capsulatum_H143 13 13
Histoplasma_capsulatum_H88 14 14
Histoplasma_capsulatum_G186AR 13 13
Aspergillus_fumigatus_A1163_ 13 13
Candida_albicans_WO-1_ 16 16
Saccharomyces_cerevisiae_UC5 14 14
Saccharomyces_cerevisiae_PW5 11 11
Saccharomyces_cerevisiae_FL100 10 10
Saccharomyces_cerevisiae_CLIB382 1 1
Saccharomyces_cerevisiae_CLIB324 6 6
Saccharomyces_cerevisiae_CBS7960 12 12
Saccharomyces_cerevisiae_YJM269 13 13
Saccharomyces_cerevisiae_T7 15 15
Saccharomyces_cerevisiae_FostersB 11 11
Saccharomyces_cerevisiae_FostersO 12 12
Saccharomyces_cerevisiae_VL3 15 15
Saccharomyces_cerevisiae_Vin13 13 13
Saccharomyces_cerevisiae_LalvinQA23 13 13
Saccharomyces_cerevisiae_AWRI796 12 12
Saccharomyces_cerevisiae_Sigma1278b 15 15
Saccharomyces_cerevisiae_W303 15 15
Saccharomyces_cerevisiae_JAY291 15 15
Saccharomyces_cerevisiae_AWRI1631 13 13
Saccharomyces_cerevisiae_YPS163 4 4
Saccharomyces_cerevisiae_M22 3 3
Saccharomyces_cerevisiae_T73 7 7
Saccharomyces_cerevisiae_CLIB215 12 12
Saccharomyces_cerevisiae_Y10 3 3
Saccharomyces_cerevisiae_YJM789_ 15 15
Saccharomyces_cerevisiae_YJM789 15 15
Saccharomyces_cerevisiae_RM11-1a 14 14
Saccharomyces_cerevisiae_RM11-1a_ 14 14
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   15 15
Schizosaccharomyces_pombe_972h-_ 14 14
Batrachochytrium_dendrobatidis_JEL423_ 17 17
Batrachochytrium_dendrobatidis_JAM81_ 16 16
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   7 7
Hordeum_vulgare_22   (Domesticated barley)   13 13
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   8 8
Trypanosoma_brucei_Lister_427_v4.1 4 4
Neospora_caninum_Nc-Liverpool_6.2 5 4
Plasmodium_falciparum_HB3_ 2 2
Plasmodium_falciparum_Dd2_ 2 2

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   52 52
Pan_troglodytes_69_2.1.4   (Chimpanzee)   49 49
Gorilla_gorilla_69_3.1   (Western gorilla)   48 48
Pongo_abelii_69_2   (Sumatran orangutan)   50 50
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   50 50
Macaca_mulatta_69_1   (Rhesus monkey)   50 50
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   54 54
Otolemur_garnettii_69_3   (Small-eared galago)   51 51
Microcebus_murinus_69_1   (Gray mouse lemur)   48 48
Rattus_norvegicus_69_3.4   (Norway rat)   52 52
Mus_musculus_69_38   (House mouse)   52 52
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   40 40
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   39 39
Cavia_porcellus_69_3   (Domestic guinea pig)   47 47
Oryctolagus_cuniculus_69_2   (Rabbit)   50 50
Ochotona_princeps_69   (American pika)   40 40
Tupaia_belangeri_69   (Northern tree shrew)   35 35
Sus_scrofa_69_10.2   (Pig)   48 48
Bos_taurus_69_3.1   (Cattle)   46 46
Vicugna_pacos_69_1   (Alpaca)   33 33
Tursiops_truncatus_69_1   (Bottlenose dolphin)   45 45
Mustela_putorius_furo_69_1.0   (Domestic ferret)   50 50
Ailuropoda_melanoleuca_69_1   (Giant panda)   51 51
Canis_familiaris_69_3.1   (Dog)   53 53
Felis_catus_69   (Domestic cat)   33 33
Equus_caballus_69_2   (Horse)   51 51
Myotis_lucifugus_69_2.0   (Little brown bat)   50 50
Pteropus_vampyrus_69_1   (Large flying fox)   45 45
Sorex_araneus_69_1   (European shrew)   28 28
Erinaceus_europaeus_69   (Western European hedgehog)   38 38
Procavia_capensis_69_1   (Cape rock hyrax)   42 42
Loxodonta_africana_69_3   (African savanna elephant)   47 47
Echinops_telfairi_69   (Small Madagascar hedgehog)   38 38
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   42 42
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   28 28
Macropus_eugenii_69_1.0   (Tammar wallaby)   41 41
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   50 50
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   47 47
Ornithorhynchus_anatinus_69_5   (Platypus)   39 39
Petromyzon_marinus_69_7.0   (Sea lamprey)   23 23
Meleagris_gallopavo_69_2   (Turkey)   40 40
Gallus_gallus_69_2   (Chicken)   46 46
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   49 49
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   43 43
Anolis_carolinensis_69_2.0   (Green anole)   44 44
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   47 47
Latimeria_chalumnae_69_1   (Coelacanth)   47 47
Gadus_morhua_69_1   (Atlantic cod)   55 55
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   61 61
Takifugu_rubripes_69_4   (Torafugu)   56 56
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   55 55
Oryzias_latipes_69_1   (Japanese medaka)   51 51
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   55 55
Oreochromis_niloticus_69_1.0   (Nile tilapia)   58 58
Danio_rerio_69_9   (Zebrafish)   63 63
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   22 22
Ciona_intestinalis_69   (Vase tunicate)   20 20
Drosophila_melanogaster_69_5   (Fruit fly)   16 16
Caenorhabditis_elegans_69_215   (Roundworm)   13 12
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   15 15
Arabidopsis_thaliana_10   (Thale cress)   9 9

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   190 188
Homo_sapiens__(NCBI_version)   (Human)   76 76
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   52 52
Heliconius_numata__(Incomplete) 2 2
Loa_loa_v3.3_(Request)   (Eye worm)   13 13
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   15 15
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   13 13
Moniliophthora_perniciosa_FA553__(Genome_survey) 5 5
Encephalitozoon_intestinalis__(endoparasite) 1 1
Encephalitozoon_cuniculi_(endoparasite) 1 1
Picea_sitchensis__(Incomplete)   (Sitka spruce)   1 1
Lotus_japonicus__(Early_assembly) 6 6
Malus_x_domestica_(Duplicate)   (Apple)   17 17
Ricinus_communis__(Early_assembly)   (Castor bean)   7 7
Nicotiana_benthamiana_0.4.4_(Early_draft) 18 18
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   10 10
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   10 10
Phoenix_dactylifera__(Early_draft)   (Date palm)   3 3
TargetDB__(Targets) 119 117
Protozoadb_2010_08_(Protozoadb) 128 125
Protein_Data_Bank_(all_PDB_sequenc) 132 132
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 190 190
STRING_v9.0.5_(STRING) 2722 2697
NCBI_2017_08_genome 33215 33120
PDB_chains_(SCOP_1.75)_(PDB) 8 8
Uniprot_2018_03_genome 34954 34697

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