SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for SNARE-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a SNARE-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   169 168
Pan_troglodytes_76_2.1.4   (Chimpanzee)   29 29
Gorilla_gorilla_76_3.1   (Western gorilla)   32 32
Pongo_abelii_76_2   (Sumatran orangutan)   31 31
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   27 27
Papio_anubis_76   (Olive baboon)   28 28
Macaca_mulatta_76_1   (Rhesus monkey)   49 49
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   60 60
Otolemur_garnettii_76_3   (Small-eared galago)   30 30
Microcebus_murinus_76_1   (Gray mouse lemur)   22 22
Rattus_norvegicus_76_5.0   (Norway rat)   29 29
Mus_musculus_76_38   (House mouse)   54 54
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   23 23
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   27 27
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   38 37
Cavia_porcellus_76_3   (Domestic guinea pig)   29 29
Oryctolagus_cuniculus_76_2   (Rabbit)   33 33
Ochotona_princeps_76   (American pika)   24 23
Tupaia_belangeri_76   (Northern tree shrew)   20 20
Sus_scrofa_76_10.2   (Pig)   29 29
Bos_taurus_76_3.1   (Cattle)   25 25
Ovis_aries_76_3.1   (Sheep)   32 32
Vicugna_pacos_76_1   (Alpaca)   20 19
Tursiops_truncatus_76_1   (Bottlenose dolphin)   23 23
Mustela_putorius_furo_76_1.0   (Domestic ferret)   29 29
Ailuropoda_melanoleuca_76_1   (Giant panda)   28 28
Canis_familiaris_76_3.1   (Dog)   37 37
Felis_catus_76_6.2   (Domestic cat)   28 28
Equus_caballus_76_2   (Horse)   26 26
Myotis_lucifugus_76_2.0   (Little brown bat)   29 29
Pteropus_vampyrus_76_1   (Large flying fox)   24 24
Sorex_araneus_76_1   (European shrew)   22 21
Erinaceus_europaeus_76   (Western European hedgehog)   20 20
Procavia_capensis_76_1   (Cape rock hyrax)   24 23
Loxodonta_africana_76_3   (African savanna elephant)   30 30
Echinops_telfairi_76   (Small Madagascar hedgehog)   19 19
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   31 31
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   18 16
Macropus_eugenii_76_1.0   (Tammar wallaby)   24 23
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   28 28
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   29 29
Ornithorhynchus_anatinus_76_5   (Platypus)   19 19
Saccoglossus_kowalevskii_v3.0 22 22
Petromyzon_marinus_76_7.0   (Sea lamprey)   15 15
Meleagris_gallopavo_76_2   (Turkey)   24 24
Gallus_gallus_76_4   (Chicken)   21 20
Anas_platyrhynchos_76_1.0   (Mallard)   19 19
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   19 19
Ficedula_albicollis_76_1.0   (Collared flycatcher)   21 21
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   28 28
Anolis_carolinensis_76_2.0   (Green anole)   26 26
Xenopus_laevis_   (African clawed frog)   71 71
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   34 34
Latimeria_chalumnae_76_1   (Coelacanth)   32 32
Lepisosteus_oculatus_76   (Spotted gar)   34 34
Gadus_morhua_76_1   (Atlantic cod)   30 30
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   29 29
Takifugu_rubripes_76_4   (Torafugu)   44 44
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   48 48
Oryzias_latipes_76_1   (Japanese medaka)   35 35
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   30 30
Poecilia_formosa_76   (Amazon molly)   36 36
Oreochromis_niloticus_76_1.0   (Nile tilapia)   35 35
Astyanax_mexicanus_76   (Mexican tetra)   30 30
Danio_rerio_76_9   (Zebrafish)   62 62
Oikopleura_dioica 21 21
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   19 19
Ciona_intestinalis_76   (Vase tunicate)   16 16
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   23 23
Adineta_vaga 57 57
Octopus_bimaculoides_280 29 29
Crassostrea_gigas_22   (Pacific oyster)   23 22
Lottia_gigantea_   (Owl limpet)   16 16
Helobdella_robusta_ 23 23
Capitella_sp._I_ 24 24
Danaus_plexippus_OGS1.0   (Monarch butterfly)   18 18
Heliconius_melpomene_   (Postman butterfly)   16 16
Bombyx_mori_   (Domestic silkworm)   13 13
Nasonia_vitripennis_   (Jewel wasp)   15 15
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   34 34
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   16 16
Linepithema_humile_v1.1   (Argentine ant)   16 16
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   15 15
Solenopsis_invicta_v.2.2.3   (Red fire ant)   11 11
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   16 16
Atta_cephalotes_v1.1 16 16
Camponotus_floridanus_v3.3   (Florida carpenter ant)   16 16
Lucilia_cuprina   (Australian sheep blowfly)   16 16
Drosophila_grimshawi_1.3 17 17
Drosophila_willistoni_1.3 16 16
Drosophila_pseudoobscura_2.13 16 16
Drosophila_persimilis_1.3 16 16
Drosophila_suzukii 18 16
Drosophila_yakuba_1.3 17 17
Drosophila_simulans_1.3 14 14
Drosophila_sechellia_1.3 16 16
Drosophila_melanogaster_76_5   (Fruit fly)   25 25
Drosophila_erecta_1.3 16 16
Drosophila_ananassae_1.3 16 16
Drosophila_virilis_1.2 16 16
Drosophila_mojavensis_1.3 16 16
Megaselia_scalaris_22 6 6
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   25 25
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   16 16
Anopheles_darlingi_22   (American malaria mosquito)   13 13
Anopheles_gambiae_49_3j   (African malaria mosquito)   16 16
Tribolium_castaneum_3.0   (Red flour beetle)   17 17
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   16 16
Acyrthosiphon_pisum_   (Pea aphid)   22 22
Rhodnius_prolixus_22 16 16
Daphnia_pulex_   (Common water flea)   17 17
Strigamia_maritima_22 17 17
Sarcoptes_scabiei 14 14
Tetranychus_urticae_   (Two-spotted spider mite)   19 19
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   16 16
Pristionchus_pacificus_ 20 20
Meloidogyne_incognita_   (Southern root-knot nematode)   24 24
Meloidogyne_hapla_ 17 17
Onchocerca_volvulus_22 16 16
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   21 21
Caenorhabditis_japonica_ 17 16
Caenorhabditis_brenneri_ 21 21
Caenorhabditis_remanei_ 16 16
Caenorhabditis_elegans_76_235   (Roundworm)   19 19
Caenorhabditis_briggsae_2 16 16
Trichinella_spiralis_22 13 13
Hymenolepis_microstoma_ 15 15
Echinococcus_multilocularis_ 19 19
Echinococcus_granulosus_ 20 20
Taenia_solium_   (Pork tapeworm)   16 16
Schistosoma_mansoni_ 22 22
Mnemiopsis_leidyi   (Sea walnut)   19 19
Thelohanellus_kitauei 9 9
Acropora_digitifera_v1.0 18 18
Nematostella_vectensis_1.0   (Starlet sea anemone)   22 22
Hydra_vulgaris 20 20
Amphimedon_queenslandica 29 29
Trichoplax_adhaerens_ 19 19
Proterospongia_sp._ATCC_50818_ 18 18
Monosiga_brevicollis_ 16 16
Sphaeroforma_arctica_JP610_ 15 15
Capsaspora_owczarzaki_ATCC_30864_ 17 17
Conidiobolus_coronatus_NRRL28638_v1.0 16 16
Mortierella_verticillata_NRRL_6337_ 18 18
Phycomyces_blakesleeanus_ 18 18
Rhizopus_oryzae_RA_99-880_ 16 16
Mucor_circinelloides_ 18 18
Rhizomucor_miehei_CAU432_ 15 15
Malassezia_globosa_CBS_7966_ 26 24
Sporisorium_reilianum_22 16 16
Ustilago_maydis_ 13 13
Mixia_osmundae_IAM_14324_v1.0 16 16
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 15 15
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 17 16
Melampsora_laricis-populina_ 17 17
Rhodotorula_graminis_WP1_v1.0 16 16
Sporobolomyces_roseus_IAM_13481_ 17 17
Microbotryum_violaceum_22 16 16
Wallemia_sebi_v1.0 15 15
Sphaerobolus_stellatus_v1.0 16 16
Piloderma_croceum_F_1598_v1.0 16 16
Serpula_lacrymans_var._lacrymans_S7.9_ 14 14
Coniophora_puteana 14 14
Hydnomerulius_pinastri_v2.0 17 17
Paxillus_rubicundulus_Ve08.2h10_v1.0 16 16
Pisolithus_microcarpus_441_v1.0 14 14
Pisolithus_tinctorius_Marx_270_v1.0 15 15
Scleroderma_citrinum_Foug_A_v1.0 17 17
Coprinopsis_cinerea_okayama7_130_v3 17 17
Pleurotus_ostreatus_   (Oyster mushroom)   16 16
Amanita_thiersii_Skay4041_v1.0 17 17
Amanita_muscaria_Koide_v1.0   (Fly agaric)   17 17
Galerina_marginata_v1.0 17 17
Hebeloma_cylindrosporum_h7_v2.0 17 17
Laccaria_bicolor_S238N-H82_ 16 16
Agaricus_bisporus_var._bisporus_ 15 15
Schizophyllum_commune_ 24 24
Stereum_hirsutum_FP-91666_SS1__v1.0 16 16
Heterobasidion_annosum_ 18 18
Gloeophyllum_trabeumv1.0 16 16
Punctularia_strigosozonata_v1.0 17 17
Sebacina_vermifera_MAFF_305830_v1.0 16 16
Fomitiporia_mediterranea_v1.0 16 16
Tulasnella_calospora_AL13/4D_v1.0 17 17
Postia_placenta_ 21 21
Wolfiporia_cocos_MD-104_SS10__v1.0 17 17
Fomitopsis_pinicolav1.0 16 16
Fomitopsis_pinicola_FP-58527_SS1_v3.0 16 16
Phanerochaete_chrysosporium_RP-78_2.1 14 14
Dichomitus_squalens 16 16
Trametes_versicolor_v1.0 16 16
Tremella_mesenterica_   (Witches' butter)   16 16
Daldinia_eschscholzii_EC12_v1.0 16 16
Apiospora_montagnei_NRRL_25634_v1.0 16 16
Magnaporthe_poae_ATCC_64411_22 11 11
Magnaporthe_grisea_70-15_ 16 16
Podospora_anserina_ 16 16
Sporotrichum_thermophile_ATCC_42464_ 16 16
Thielavia_terrestris_NRRL_8126_ 14 14
Chaetomium_globosum_CBS_148.51_ 15 15
Neurospora_tetrasperma_ 15 15
Neurospora_discreta_FGSC_8579_ 15 15
Neurospora_crassa_OR74A_ 16 16
Cryphonectria_parasitica_   (Chestnut blight fungus)   16 16
Verticillium_albo-atrum_VaMs.102_ 13 13
Verticillium_dahliae_VdLs.17_ 16 16
Acremonium_alcalophilumv_1.0 16 16
Glomerella_graminicola_22 16 16
Fusarium_graminearum_ 16 16
Nectria_haematococca_mpVI_ 17 17
Fusarium_oxysporum_f._sp._lycopersici_4286_ 16 16
Fusarium_verticillioides_7600_ 14 14
Trichoderma_asperellum_CBS_433.97_v1.0 16 16
Trichoderma_atroviride_ 16 16
Trichoderma_citrinoviride_v1.0 13 13
Trichoderma_reesei_1.2 16 16
Trichoderma_virens_Gv29-8_ 16 16
Trichoderma_longibrachiatum_ATCC_18648_v1.0 16 16
Trichoderma_harzianum_CBS_226.95_v1.0 16 16
Amorphotheca_resinae_v1.0   (Creosote fungus)   16 16
Botrytis_cinerea_B05.10_ 16 16
Sclerotinia_sclerotiorum_ 15 15
Blumeria_graminis_22 15 15
Didymella_exigua_CBS_183.55_v1.0 15 15
Leptosphaeria_maculans_22 16 16
Setosphaeria_turcica_v1.0 17 16
Cochliobolus_miyabeanus_ATCC_44560_v1.0 16 16
Cochliobolus_victoriae_FI3_v1.0 16 16
Cochliobolus_carbonum_26-R-13_v1.0 16 16
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   16 16
Alternaria_brassicicola_ 14 14
Cochliobolus_lunatus_m118_v2.0 16 16
Pyrenophora_teres_f._teres_22 16 16
Pyrenophora_tritici-repentis_ 16 16
Stagonospora_nodorum_ 16 16
Mycosphaerella_graminicola_IPO323_ 16 16
Zasmidium_cellare_ATCC_36951_v1.0 16 16
Dothistroma_septosporum 16 16
Septoria_musiva_v1.0 16 16
Mycosphaerella_fijiensis_CIRAD86_ 14 14
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 16 16
Paracoccidioides_brasiliensis_Pb18_ 15 15
Coccidioides_posadasii_RMSCC_3488_ 16 16
Coccidioides_immitis_RS_ 16 16
Ajellomyces_dermatitidis_SLH14081_ 15 15
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 14 14
Microsporum_canis_CBS_113480_ 16 16
Trichophyton_equinum_CBS_127.97_ 15 15
Trichophyton_verrucosum_HKI_0517_ 10 10
Arthroderma_benhamiae_CBS_112371_ 11 11
Trichophyton_tonsurans_CBS_112818_ 16 16
Trichophyton_rubrum_CBS_118892_ 16 16
Uncinocarpus_reesii_1704_ 14 14
Aspergillus_zonatus_v1.0 15 15
Penicillium_chrysogenum_Wisconsin_54-1255_ 16 16
Penicillium_chrysogenum_v1.0 16 16
Aspergillus_acidus_v1.0 15 15
Aspergillus_fumigatus_Af293 15 15
Aspergillus_brasiliensis_v1.0 16 16
Aspergillus_nidulans_FGSC_A4_ 14 14
Aspergillus_sydowii_v1.0 16 16
Aspergillus_versicolor_v1.0 16 16
Aspergillus_glaucus 16 16
Aspergillus_carbonarius_ITEM_5010_ 16 16
Neosartorya_fischeri_NRRL_181_ 15 15
Aspergillus_terreus_NIH2624_ 15 15
Aspergillus_tubingensis_v1.0 16 16
Aspergillus_wentii_v1.0 16 16
Aspergillus_oryzae_RIB40_ 11 11
Aspergillus_niger_22 15 15
Aspergillus_niger_ATCC_1015_ 10 10
Aspergillus_flavus_NRRL3357_ 15 15
Aspergillus_clavatus_NRRL_1_ 16 16
Penicillium_marneffei_ATCC_18224_ 19 19
Tuber_melanosporum_Mel28_22 15 15
Tuber_melanosporum_Vittad_   (Perigord truffle)   17 17
Hansenula_polymorpha_v2.0 15 15
Dekkera_bruxellensis_CBS_2499_v2.0 15 15
Pichia_membranifaciensv1.0 16 16
Candida_tanzawaensis_NRRL_Y-17324__v1.0 15 15
Candida_dubliniensis_CD36_ 15 15
Candida_tropicalis_MYA-3404_ 14 14
Candida_parapsilosis_ 14 14
Candida_albicans_SC5314 15 15
Lodderomyces_elongisporus_NRRL_YB-4239_ 15 15
Babjeviella_inositovora_NRRL_Y-12698_v1.0 15 15
Pichia_stipitis_CBS_6054_ 14 14
Candida_guilliermondii_ATCC_6260_ 15 15
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 15 15
Debaromyces_hansenii 15 15
Wickerhamomyces_anomalus 15 15
Pichia_pastoris_GS115_ 16 16
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 11 11
Yarrowia_lipolytica_CLIB122 16 16
Candida_lusitaniae_ATCC_42720_ 14 14
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 15 15
Vanderwaltozyma_polyspora_DSM_70294_ 15 15
Candida_glabrata_CBS138 15 15
Kluyveromyces_thermotolerans_CBS_6340 16 16
Lachancea_kluyveri_ 16 16
Kluyveromyces_waltii 15 15
Ashbya_gossypii_ATCC_10895_ 16 16
Zygosaccharomyces_rouxii_ 14 14
Saccharomyces_mikatae_MIT 13 13
Saccharomyces_paradoxus_MIT 14 14
Saccharomyces_cerevisiae_76   (Baker's yeast)   15 15
Saccharomyces_bayanus_MIT 15 15
Kluyveromyces_lactis 16 16
Schizosaccharomyces_cryophilus_OY26_22 15 15
Schizosaccharomyces_octosporus_yFS286_ 15 15
Schizosaccharomyces_japonicus_yFS275_ 15 15
Schizosaccharomyces_pombe   (Fission yeast)   15 15
Catenaria_anguillulae_PL171_v1.0 16 16
Allomyces_macrogynus_ATCC_38327_ 35 33
Spizellomyces_punctatus_DAOM_BR117_ 17 17
Dictyostelium_discoideum 26 26
Dictyostelium_purpureum_ 22 22
Entamoeba_dispar_1.2 23 23
Entamoeba_invadens_1.2 23 23
Entamoeba_histolytica_1 23 23
Selaginella_moellendorffii_ 52 52
Pinus_taeda   (Loblolly pine)   28 28
Picea_abies   (Norway spruce)   18 18
Eucalyptus_grandis_v201   (Rose gum)   62 62
Theobroma_cacao_B97-61/B2_v1   (Cacao)   38 38
Gossypium_raimondii_v221 182 182
Citrus_clementina_v165 42 42
Citrus_sinensis_v154   (Sweet orange)   76 76
Thellungiella_halophila_v173 54 54
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   69 69
Capsella_rubella_v183 42 42
Arabidopsis_lyrata_   (Lyrate rockcress)   39 39
Arabidopsis_thaliana_10   (Thale cress)   50 50
Carica_papaya_   (Papaya)   33 33
Medicago_truncatula_   (Barrel medic)   66 65
Phaseolus_vulgaris_v186   (French bean)   53 53
Glycine_max_v109   (Soybean)   127 127
Cucumis_sativus_v122   (Cucumber)   49 49
Fragaria_vesca_   (Wild strawberry)   34 34
Malus_domestica_v196   (Apple)   105 92
Prunus_persica_v139   (Peach)   37 37
Linum_usitatissimum_v200   (Flax)   67 66
Manihot_esculenta_v147   (Cassava)   65 65
Populus_trichocarpa_v156   (Black cottonwood)   57 57
Vitis_vinifera_   (Wine grape)   36 36
Mimulus_guttatus_v140   (Spotted monkey flower)   41 40
Solanum_lycopersicum_v.2.3   (Tomato)   41 41
Solanum_tuberosum_   (Potato)   57 56
Actinidia_chinensis_Hongyang_ 57 56
Aquilegia_coerulea_v195 70 69
Triticum_urartu_22 33 33
Triticum_aestivum_22   (Bread wheat)   91 91
Aegilops_tauschii_22 31 31
Brachypodium_distachyon_   (Stiff brome)   50 50
Oryza_barthii_22   (African wild rice)   67 63
Oryza_meridionalis_22 68 62
Oryza_glumaepatula_22 60 60
Oryza_glaberrima   (African rice)   39 39
Oryza_punctata_22 67 66
Oryza_nivara_22 61 59
Oryza_brachyantha_22   (Malo sina)   34 33
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   76 76
Oryza_sativa_v193   (Rice)   73 73
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   37 37
Panicum_virgatum_v202   (Switchgrass)   88 88
Setaria_italica_v164   (Foxtail millet)   57 57
Zea_mays_subsp._mays_   (Maize)   106 106
Zea_mays_v181   (Maize)   112 112
Sorghum_bicolor_   (Sorghum)   38 37
Musa_balbisiana   (Balbis banana)   50 48
Musa_acuminata_22   (Wild Malaysian banana)   52 52
Amborella_trichopoda_22 31 31
Physcomitrella_patens 44 44
Coccomyxa_subellipsoidea_sp._C-169_v2 19 19
Asterochloris_sp._Cgr/DA1pho_v1.0 18 18
Chlorella_variabilis_sp._NC64A_ 14 14
Chlorella_vulgaris_ 19 19
Volvox_carteri_f._nagariensis_ 20 20
Volvox_carteri_v199 21 21
Chlamydomonas_reinhardtii_4.0 21 21
Ostreococcus_sp._RCC809_ 17 17
Ostreococcus_lucimarinus_CCE9901_ 16 16
Ostreococcus_tauri_ 17 17
Bathycoccus_prasinos_ 17 17
Micromonas_sp._RCC299_ 20 20
Micromonas_pusilla_CCMP1545_v3.0 18 18
Cyanidioschyzon_merolae_strain_10D_22 14 14
Cyanidioschyzon_merolae 14 14
Porphyridium_purpureum_02_2012 16 16
Thecamonas_trahens_ATCC_50062_ 20 20
Bigelowiella_natans_CCMP2755_22 22 22
Giardia_lamblia_2.3 11 11
Cyanophora_paradoxa_ 18 18
Leishmania_mexicana_2.4 15 15
Leishmania_major_strain_Friedlin_ 14 14
Leishmania_infantum_JPCM5_2.4 14 14
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 15 15
Trypanosoma_vivax_ 13 13
Trypanosoma_cruzi_strain_CL_Brener 19 18
Trypanosoma_congolense_2.4 15 15
Trypanosoma_brucei_gambiense_v4.1 17 17
Trypanosoma_brucei_TREU927_v4.1 17 17
Ectocarpus_siliculosus 22 22
Aureococcus_anophagefferens_ 23 23
Albugo_laibachii_22 21 21
Pythium_iwayamai_DAOM_BR242034_22 22 22
Pythium_arrhenomanes_ATCC_12531_22 19 19
Pythium_ultimum_v1.7-2 22 22
Pythium_aphanidermatum_DAOM_BR444_22 21 21
Pythium_irregulare_DAOM_BR486_22 22 22
Pythium_vexans_DAOM_BR484_22 25 24
Phytophthora_ramorum_1.1   (Sudden oak death agent)   23 23
Phytophthora_sojae_1.1 21 21
Phytophthora_infestans_T30-4_ 22 22
Phytophthora_capsici_ 19 19
Hyaloperonospora_arabidopsidis_22 21 21
Phaeodactylum_tricornutumCCAP_1055/1 21 21
Fragilariopsis_cylindrus 32 32
Thalassiosira_pseudonana_CCMP1335 19 19
Perkinsus_marinus_ATCC_50983_ 36 36
Paramecium_tetraurelia_ 47 47
Tetrahymena_thermophila_SB210_1_ 29 29
Ichthyophthirius_multifiliis_strain_G5_ 19 19
Cryptosporidium_hominis 8 8
Cryptosporidium_muris 14 14
Cryptosporidium_parvum_Iowa_II 14 14
Neospora_caninum 20 20
Toxoplasma_gondii_VEG 18 18
Toxoplasma_gondii_ME49 20 20
Toxoplasma_gondii_GT1 20 20
Babesia_bovis_T2Bo_ 34 34
Theileria_parva__ 13 13
Theileria_annulata 16 16
Plasmodium_falciparum_3D7_ 19 19
Plasmodium_vivax_SaI-1_7.0 19 19
Plasmodium_knowlesi_strain_H_ 19 19
Plasmodium_yoelii_ssp._yoelii_1_ 17 17
Plasmodium_chabaudi_ 19 19
Plasmodium_berghei_ANKA_ 19 19
Symbiodinium_minutum_clade_B1_v1.2 23 23
Naegleria_gruberi_ 26 26
Trichomonas_vaginalis_ 45 45
Guillardia_theta_CCMP2712_v1.0_ 19 19
Emiliania_huxleyi_CCMP1516_ 24 24

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   79 79
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   21 21
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   19 19
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   14 14
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   16 16
Cryptococcus_neoformans_var._grubii_H99_ 16 16
Cryptococcus_neoformans_B-3501A_ 17 17
Cryptococcus_neoformans_JEC21_ 15 15
Paracoccidioides_brasiliensis_Pb01_ 15 15
Paracoccidioides_brasiliensis_Pb03_ 14 14
Coccidioides_posadasii_str._Silveira_ 16 16
Coccidioides_immitis_RMSCC_3703_ 16 16
Coccidioides_immitis_RMSCC_2394_ 15 15
Coccidioides_immitis_H538.4_ 14 14
Ajellomyces_dermatitidis_ER-3_ 15 15
Histoplasma_capsulatum_H143 15 15
Histoplasma_capsulatum_H88 15 15
Histoplasma_capsulatum_G186AR 15 15
Aspergillus_fumigatus_A1163_ 16 16
Candida_albicans_WO-1_ 15 15
Saccharomyces_cerevisiae_UC5 15 15
Saccharomyces_cerevisiae_PW5 14 14
Saccharomyces_cerevisiae_FL100 11 11
Saccharomyces_cerevisiae_CLIB382 2 2
Saccharomyces_cerevisiae_CLIB324 10 10
Saccharomyces_cerevisiae_CBS7960 12 12
Saccharomyces_cerevisiae_YJM269 12 12
Saccharomyces_cerevisiae_T7 15 15
Saccharomyces_cerevisiae_FostersB 14 14
Saccharomyces_cerevisiae_FostersO 12 12
Saccharomyces_cerevisiae_VL3 12 12
Saccharomyces_cerevisiae_Vin13 13 13
Saccharomyces_cerevisiae_LalvinQA23 13 13
Saccharomyces_cerevisiae_AWRI796 15 15
Saccharomyces_cerevisiae_Sigma1278b 15 15
Saccharomyces_cerevisiae_W303 15 15
Saccharomyces_cerevisiae_JAY291 15 15
Saccharomyces_cerevisiae_AWRI1631 13 13
Saccharomyces_cerevisiae_YPS163 5 5
Saccharomyces_cerevisiae_M22 8 8
Saccharomyces_cerevisiae_T73 9 9
Saccharomyces_cerevisiae_CLIB215 14 14
Saccharomyces_cerevisiae_Y10 5 5
Saccharomyces_cerevisiae_YJM789_ 15 15
Saccharomyces_cerevisiae_YJM789 15 15
Saccharomyces_cerevisiae_RM11-1a 15 15
Saccharomyces_cerevisiae_RM11-1a_ 15 15
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   15 15
Schizosaccharomyces_pombe_972h-_ 15 15
Batrachochytrium_dendrobatidis_JEL423_ 20 20
Batrachochytrium_dendrobatidis_JAM81_ 22 22
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   38 37
Hordeum_vulgare_22   (Domesticated barley)   52 52
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   42 40
Trypanosoma_brucei_Lister_427_v4.1 17 17
Neospora_caninum_Nc-Liverpool_6.2 20 20
Plasmodium_falciparum_HB3_ 19 19
Plasmodium_falciparum_Dd2_ 12 12

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   29 29
Pan_troglodytes_69_2.1.4   (Chimpanzee)   26 26
Gorilla_gorilla_69_3.1   (Western gorilla)   27 27
Pongo_abelii_69_2   (Sumatran orangutan)   28 28
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   25 25
Macaca_mulatta_69_1   (Rhesus monkey)   31 31
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   29 29
Otolemur_garnettii_69_3   (Small-eared galago)   29 29
Microcebus_murinus_69_1   (Gray mouse lemur)   22 22
Rattus_norvegicus_69_3.4   (Norway rat)   29 29
Mus_musculus_69_38   (House mouse)   28 28
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   23 23
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   27 27
Cavia_porcellus_69_3   (Domestic guinea pig)   28 28
Oryctolagus_cuniculus_69_2   (Rabbit)   30 30
Ochotona_princeps_69   (American pika)   24 23
Tupaia_belangeri_69   (Northern tree shrew)   20 20
Sus_scrofa_69_10.2   (Pig)   24 24
Bos_taurus_69_3.1   (Cattle)   25 25
Vicugna_pacos_69_1   (Alpaca)   20 19
Tursiops_truncatus_69_1   (Bottlenose dolphin)   23 23
Mustela_putorius_furo_69_1.0   (Domestic ferret)   29 29
Ailuropoda_melanoleuca_69_1   (Giant panda)   26 26
Canis_familiaris_69_3.1   (Dog)   28 28
Felis_catus_69   (Domestic cat)   19 19
Equus_caballus_69_2   (Horse)   26 26
Myotis_lucifugus_69_2.0   (Little brown bat)   29 29
Pteropus_vampyrus_69_1   (Large flying fox)   24 24
Sorex_araneus_69_1   (European shrew)   22 21
Erinaceus_europaeus_69   (Western European hedgehog)   20 20
Procavia_capensis_69_1   (Cape rock hyrax)   24 23
Loxodonta_africana_69_3   (African savanna elephant)   29 29
Echinops_telfairi_69   (Small Madagascar hedgehog)   19 19
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   18 17
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   18 16
Macropus_eugenii_69_1.0   (Tammar wallaby)   24 23
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   24 24
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   26 26
Ornithorhynchus_anatinus_69_5   (Platypus)   18 18
Petromyzon_marinus_69_7.0   (Sea lamprey)   15 15
Meleagris_gallopavo_69_2   (Turkey)   21 21
Gallus_gallus_69_2   (Chicken)   21 21
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   19 19
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   23 23
Anolis_carolinensis_69_2.0   (Green anole)   26 26
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   27 27
Latimeria_chalumnae_69_1   (Coelacanth)   24 24
Gadus_morhua_69_1   (Atlantic cod)   30 30
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   28 28
Takifugu_rubripes_69_4   (Torafugu)   31 31
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   31 31
Oryzias_latipes_69_1   (Japanese medaka)   29 29
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   30 30
Oreochromis_niloticus_69_1.0   (Nile tilapia)   31 31
Danio_rerio_69_9   (Zebrafish)   33 33
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   13 13
Ciona_intestinalis_69   (Vase tunicate)   15 15
Drosophila_melanogaster_69_5   (Fruit fly)   17 17
Caenorhabditis_elegans_69_215   (Roundworm)   16 16
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   15 15
Arabidopsis_thaliana_10   (Thale cress)   38 38

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   180 179
Homo_sapiens__(NCBI_version)   (Human)   43 43
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   28 28
Heliconius_numata__(Incomplete) 16 16
Loa_loa_v3.3_(Request)   (Eye worm)   16 16
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   19 19
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   16 16
Moniliophthora_perniciosa_FA553__(Genome_survey) 7 7
Encephalitozoon_intestinalis__(endoparasite) 6 6
Encephalitozoon_cuniculi_(endoparasite) 6 6
Picea_sitchensis__(Incomplete)   (Sitka spruce)   9 9
Lotus_japonicus__(Early_assembly) 37 37
Malus_x_domestica_(Duplicate)   (Apple)   105 92
Ricinus_communis__(Early_assembly)   (Castor bean)   30 30
Nicotiana_benthamiana_0.4.4_(Early_draft) 84 80
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   41 41
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   41 41
Phoenix_dactylifera__(Early_draft)   (Date palm)   26 26
Protein_Data_Bank_(all_PDB_sequenc) 151 151
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 217 217
Protozoadb_2010_08_(Protozoadb) 646 644
PDB_chains_(SCOP_1.75)_(PDB) 11 11
STRING_v9.0.5_(STRING) 2478 2475
NCBI_2017_08_genome 24895 24847
Uniprot_2018_03_genome 32381 32260
Core_Eukaryotic_Genes_458_(CEGMA) 42 42
TargetDB__(Targets) 122 122

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