SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > SCOP hierarchy > Phase 1 flagellin > Domain combinations

Domain combinations for Phase 1 flagellin superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.

Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Phase 1 flagellin domain in that genome.

Complete genomes
Genome     Number   Proteins
Lepisosteus_oculatus_76   (Spotted gar)   1 1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   1 1
Oikopleura_dioica 2 2
Adineta_vaga 1 1
Octopus_bimaculoides_280 2 2
Lottia_gigantea_   (Owl limpet)   1 1
Helobdella_robusta_ 1 1
Drosophila_grimshawi_1.3 3 3
Drosophila_melanogaster_76_5   (Fruit fly)   1 1
Drosophila_ananassae_1.3 1 1
Drosophila_mojavensis_1.3 1 1
Anopheles_gambiae_49_3j   (African malaria mosquito)   1 1
Strigamia_maritima_22 1 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   1 1
Caenorhabditis_japonica_ 1 1
Caenorhabditis_brenneri_ 1 1
Caenorhabditis_remanei_ 6 6
Nematostella_vectensis_1.0   (Starlet sea anemone)   2 1
Hydra_vulgaris 1 1
Proterospongia_sp._ATCC_50818_ 4 4
Mucor_circinelloides_ 1 1
Sporisorium_reilianum_22 1 1
Schizophyllum_commune_ 1 1
Trichophyton_equinum_CBS_127.97_ 1 1
Aspergillus_zonatus_v1.0 1 1
Candida_lusitaniae_ATCC_42720_ 1 1
Schizosaccharomyces_pombe   (Fission yeast)   1 1
Allomyces_macrogynus_ATCC_38327_ 2 2
Dictyostelium_discoideum 1 1
Bigelowiella_natans_CCMP2755_22 1 1
Leishmania_major_strain_Friedlin_ 1 1
Phytophthora_capsici_ 3 2
Fragilariopsis_cylindrus 1 1
Symbiodinium_minutum_clade_B1_v1.2 1 1
Trichomonas_vaginalis_ 1 1
Guillardia_theta_CCMP2712_v1.0_ 1 1
Conexibacter_woesei_DSM_14684 8 8
Acidimicrobium_ferrooxidans_DSM_10331 3 3
Acidothermus_cellulolyticus_11B 3 3
Modestobacter_marinus 3 3
Blastococcus_saxobsidens_DD2 3 3
Geodermatophilus_obscurus_DSM_43160 3 3
Kineococcus_radiotolerans_SRS30216 4 3
Streptosporangium_roseum_DSM_43021 1 1
Streptomyces_sp._PAMC26508 1 1
Actinosynnema_mirum_DSM_43827 3 3
Nocardioides_sp._JS614 3 3
Actinoplanes_sp._N902-109 3 3
Actinoplanes_sp._SE50/110 3 3
Actinoplanes_missouriensis_431 3 3
Sanguibacter_keddieii_DSM_10542 3 3
Leifsonia_xyli_subsp._xyli_str._CTCB07 2 2
Jonesia_denitrificans_DSM_20603 6 6
Intrasporangium_calvum_DSM_43043 1 1
Cellulomonas_fimi_ATCC_484 3 3
[Cellvibrio]_gilvus_ATCC_13127 3 3
Arthrobacter_chlorophenolicus_A6 3 3
Mobiluncus_curtisii_ATCC_43063 5 5
Thermomicrobium_roseum_DSM_5159 3 3
Sphaerobacter_thermophilus_DSM_20745 3 3
Selenomonas_sputigena_ATCC_35185 5 5
Selenomonas_ruminantium_subsp._lactilytica_TAM6421 13 12
Natranaerobius_thermophilus_JW/NM-WN-LF 3 3
Symbiobacterium_thermophilum_IAM_14863 3 3
Clostridium_clariflavum_DSM_19732 5 5
Eubacterium_siraeum 3 3
Clostridium_cellulolyticum_H10 6 6
Clostridium_thermocellum_ATCC_27405 5 5
Ethanoligenens_harbinense_YUAN-3 4 3
Thermaerobacter_marianensis_DSM_12885 3 3
Sulfobacillus_acidophilus_DSM_10332 3 3
Oscillibacter_valericigenes_Sjm18-20 3 3
butyrate-producing_bacterium_SS3/4 4 4
Candidatus_Desulforudis_audaxviator_MP104C 3 3
Thermincola_potens_JR 3 3
Pelotomaculum_thermopropionicum_SI 3 3
Desulfosporosinus_acidiphilus_SJ4 3 3
Desulfosporosinus_orientis_DSM_765 8 8
Dehalobacter_sp._DCA 4 4
Dehalobacter_sp._CF 4 4
Syntrophobotulus_glycolicus_DSM_8271 7 7
Desulfitobacterium_hafniense_Y51 3 3
Desulfitobacterium_dehalogenans_ATCC_51507 3 3
Desulfotomaculum_reducens_MI-1 6 4
Desulfotomaculum_acetoxidans_DSM_771 4 3
Desulfotomaculum_kuznetsovii_DSM_6115 4 4
Desulfotomaculum_carboxydivorans_CO-1-SRB 3 3
Desulfotomaculum_ruminis_DSM_2154 4 4
Acetobacterium_woodii_DSM_1030 4 4
Eubacterium_eligens_ATCC_27750 7 7
Clostridium_difficile_630 3 3
Clostridium_sticklandii_DSM_519 4 4
Clostridium_saccharolyticum_WM1 2 2
Clostridium_phytofermentans_ISDg 5 5
Clostridium_lentocellum_DSM_5427 6 6
Eubacterium_rectale_M104/1 7 7
Eubacterium_rectale_ATCC_33656 6 6
Roseburia_hominis_A2-183 7 7
Roseburia_intestinalis 7 7
Butyrivibrio_proteoclasticus_B316 8 8
Butyrivibrio_fibrisolvens 7 7
Syntrophothermus_lipocalidus_DSM_12680 4 4
Syntrophomonas_wolfei_subsp._wolfei_str._Goettingen 6 3
Heliobacterium_modesticaldum_Ice1 4 4
Alkaliphilus_oremlandii_OhILAs 4 4
Alkaliphilus_metalliredigens_QYMF 4 4
Candidatus_Arthromitus_sp._SFB-mouse-Japan 7 7
Clostridium_sp._BNL1100 5 5
Clostridium_novyi_NT 6 6
Clostridium_ljungdahlii_DSM_13528 7 7
Clostridium_kluyveri_DSM_555 4 4
Clostridium_beijerinckii_NCIMB_8052 4 4
Clostridium_tetani_E88 5 5
Clostridium_cellulovorans_743B 8 8
Clostridium_botulinum_A_str._ATCC_3502 8 8
Clostridium_acetobutylicum_ATCC_824 6 6
Mahella_australiensis_50-1_BON 4 4
Thermosediminibacter_oceani_DSM_16646 3 3
Caldicellulosiruptor_obsidiansis_OB47 3 3
Caldicellulosiruptor_kronotskyensis_2002 3 3
Caldicellulosiruptor_hydrothermalis_108 3 3
Caldicellulosiruptor_owensensis_OL 3 3
Caldicellulosiruptor_lactoaceticus_6A 3 3
Caldicellulosiruptor_kristjanssonii_177R1B 3 3
Caldicellulosiruptor_saccharolyticus_DSM_8903 3 3
Caldicellulosiruptor_bescii_DSM_6725 3 3
Thermoanaerobacterium_xylanolyticum_LX-11 3 3
Thermoanaerobacterium_thermosaccharolyticum_DSM_571 3 3
Thermodesulfobium_narugense_DSM_14796 4 3
Coprothermobacter_proteolyticus_DSM_5265 3 3
Tepidanaerobacter_acetatoxydans_Re1 3 3
Thermoanaerobacter_tengcongensis_MB4 3 3
Carboxydothermus_hydrogenoformans_Z-2901 3 3
Moorella_thermoacetica_ATCC_39073 3 3
Ammonifex_degensii_KC4 3 3
Thermoanaerobacter_mathranii_subsp._mathranii_str._A3 3 3
Thermoanaerobacter_pseudethanolicus_ATCC_33223 3 3
Thermoanaerobacter_sp._X514 3 3
Thermoanaerobacter_italicus_Ab9 3 3
Thermoanaerobacter_wiegelii_Rt8.B1 4 4
Thermoanaerobacter_brockii_subsp._finnii_Ako-1 3 3
Acetohalobium_arabaticum_DSM_5501 6 4
Halothermothrix_orenii_H_168 3 3
Halanaerobium_hydrogeniformans 2 2
Halanaerobium_praevalens_DSM_2228 3 3
Carnobacterium_sp._17-4 3 3
Carnobacterium_sp._WN1359 3 3
Lactobacillus_ruminis_ATCC_27782 5 5
Exiguobacterium_sp._MH3 5 5
Exiguobacterium_sp._AT1b 4 4
Exiguobacterium_sibiricum_255-15 5 5
Kyrpidia_tusciae_DSM_2912 3 3
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_DSM_446 3 3
Brevibacillus_brevis_NBRC_100599 3 3
Paenibacillus_sp._JDR-2 3 3
Paenibacillus_terrae_HPL-003 3 3
Paenibacillus_mucilaginosus_3016 4 4
Paenibacillus_polymyxa_M1 4 4
Bacillus_selenitireducens_MLS10 6 6
Listeria_welshimeri_serovar_6b_str._SLCC5334 3 3
Listeria_innocua_Clip11262 3 3
Listeria_seeligeri_serovar_1/2b_str._SLCC3954 3 3
Listeria_monocytogenes_serotype_4b_str._CLIP_80459 3 3
Listeria_ivanovii_subsp._ivanovii_PAM_55 3 3
Solibacillus_silvestris_StLB046 4 4
Geobacillus_thermoglucosidasius_C56-YS93 4 4
Lysinibacillus_sphaericus_C3-41 4 4
Oceanobacillus_iheyensis_HTE831 3 3
Anoxybacillus_flavithermus_WK1 3 3
Geobacillus_thermoleovorans_CCB_US3_UF5 5 5
Geobacillus_kaustophilus_HTA426 4 4
Geobacillus_sp._GHH01 4 4
Geobacillus_sp._WCH70 5 4
Geobacillus_thermodenitrificans_NG80-2 4 4
Halobacillus_halophilus_DSM_2266 3 3
Bacillus_sp._JS 4 4
Bacillus_sp._1NLA3E 3 3
Bacillus_amyloliquefaciens_FZB42 3 3
Bacillus_atrophaeus_1942 3 3
Bacillus_subtilis_subsp._subtilis_str._168 4 4
Bacillus_licheniformis_DSM_13_=_ATCC_14580 3 3
Bacillus_halodurans_C-125 4 4
Bacillus_weihenstephanensis_KBAB4 7 6
Bacillus_thuringiensis_str._Al_Hakam 4 4
Bacillus_cereus_03BB102 4 4
Bacillus_anthracis_str._A0248 2 2
Bacillus_pseudofirmus_OF4 5 5
Bacillus_clausii_KSM-K16 3 3
Bacillus_cellulosilyticus_DSM_2522 4 4
Bacillus_pumilus_SAFR-032 7 7
Bacillus_megaterium_DSM_319 4 4
Bacillus_coagulans_2-6 3 3
Gemmatimonas_aurantiaca_T-27 3 3
Melioribacter_roseus_P3M 3 3
Ignavibacterium_album_JCM_16511 3 3
Salinibacter_ruber_M8 3 3
Rhodothermus_marinus_DSM_4252 4 4
Robiginitalea_biformata_HTCC2501 1 1
Phycisphaera_mikurensis_NBRC_102666 6 5
Planctomyces_brasiliensis_DSM_5305 5 3
Planctomyces_limnophilus_DSM_3776 5 3
Rhodopirellula_baltica_SH_1 7 5
Pirellula_staleyi_DSM_6068 5 3
Opitutus_terrae_PB90-1 7 7
Fretibacterium_fastidiosum 6 4
Thermovirga_lienii_DSM_17291 5 3
Thermanaerovibrio_acidaminovorans_DSM_6589 4 3
Anaerobaculum_mobile_DSM_13181 5 3
Turneriella_parva_DSM_21527 8 8
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._L550 7 7
Leptospira_interrogans_serovar_Lai_str._IPAV 6 6
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 6 6
Brachyspira_murdochii_DSM_12563 6 6
Brachyspira_intermedia_PWS/A 6 5
Brachyspira_pilosicoli_95/1000 5 5
Brachyspira_hyodysenteriae_WA1 6 6
Borrelia_garinii_PBi 3 3
Borrelia_bissettii_DN127 3 3
Borrelia_afzelii_PKo 3 3
Borrelia_burgdorferi_B31 3 3
Borrelia_recurrentis_A1 3 3
Borrelia_duttonii_Ly 3 3
Borrelia_crocidurae_str._Achema 3 3
Borrelia_turicatae_91E135 3 3
Borrelia_hermsii_DAH 3 3
Spirochaeta_smaragdinae_DSM_11293 5 5
Spirochaeta_caldaria_DSM_7334 5 5
Treponema_azotonutricium_ZAS-9 5 5
Treponema_primitia_ZAS-2 5 5
Treponema_brennaborense_DSM_12168 5 5
Treponema_paraluiscuniculi_Cuniculi_A 5 5
Treponema_succinifaciens_DSM_2489 5 5
Treponema_pallidum_subsp._pallidum_SS14 10 10
Treponema_denticola_ATCC_35405 5 5
Spirochaeta_africana_DSM_8902 5 5
Spirochaeta_thermophila_DSM_6192 5 5
Thermodesulfatator_indicus_DSM_15286 4 3
Thermodesulfobacterium_sp._OPB45 3 3
Desulfurispirillum_indicum_S5 7 7
Calditerrivibrio_nitroreducens_DSM_19672 6 4
Denitrovibrio_acetiphilus_DSM_12809 8 6
Deferribacter_desulfuricans_SSM1 5 5
Marinitoga_piezophila_KA3 6 6
Petrotoga_mobilis_SJ95 3 3
Fervidobacterium_pennivorans_DSM_9078 5 5
Fervidobacterium_nodosum_Rt17-B1 6 6
Thermosipho_melanesiensis_BI429 5 5
Thermosipho_africanus_TCF52B 4 4
Thermotoga_lettingae_TMO 3 3
Thermotoga_thermarum_DSM_5069 4 4
Thermotoga_sp._RQ2 4 4
Thermotoga_naphthophila_RKU-10 4 4
Thermotoga_petrophila_RKU-1 4 4
Thermotoga_neapolitana_DSM_4359 4 4
Thermotoga_maritima_MSB8 4 4
Thermovibrio_ammonificans_HB-1 3 3
Desulfurobacterium_thermolithotrophum_DSM_11699 3 3
Sulfurihydrogenibium_sp._YO3AOP1 3 3
Sulfurihydrogenibium_azorense_Az-Fu1 3 3
Persephonella_marina_EX-H1 3 3
Hydrogenobaculum_sp._SN 4 3
Hydrogenobaculum_sp._HO 4 3
Hydrogenobaculum_sp._Y04AAS1 4 3
Thermocrinis_albus_DSM_14484 3 3
Aquifex_aeolicus_VF5 3 3
Candidatus_Solibacter_usitatus_Ellin6076 5 4
Granulicella_tundricola_MP5ACTX9 6 6
Candidatus_Koribacter_versatilis_Ellin345 3 3
Terriglobus_saanensis_SP1PR4 3 3
Terriglobus_roseus_DSM_18391 3 3
Acidobacterium_capsulatum_ATCC_51196 3 3
Thermodesulfovibrio_yellowstonii_DSM_11347 3 3
Candidatus_Nitrospira_defluvii 3 3
Leptospirillum_ferrooxidans_C2-3 4 4
Candidatus_Methylomirabilis_oxyfera 3 3
Acidithiobacillus_caldus_SM-1 4 3
Bacteriovorax_marinus_SJ 7 7
Bdellovibrio_bacteriovorus_HD100 8 8
Nautilia_profundicola_AmH 5 5
Sulfurospirillum_deleyianum_DSM_6946 4 4
Sulfurospirillum_barnesii_SES-3 4 4
Arcobacter_sp._L 7 7
Arcobacter_nitrofigilis_DSM_7299 5 5
Arcobacter_butzleri_RM4018 5 5
Campylobacter_lari_RM2100 5 4
Campylobacter_curvus_525.92 4 4
Campylobacter_concisus_13826 3 3
Campylobacter_jejuni_subsp._doylei_269.97 4 4
Campylobacter_sp._03-427 6 5
Campylobacter_fetus_subsp._fetus_82-40 6 5
uncultured_Sulfuricurvum_sp._RIFRC-1 4 4
Sulfuricurvum_kujiense_DSM_16994 7 5
Sulfurimonas_autotrophica_DSM_16294 4 3
Sulfurimonas_denitrificans_DSM_1251 4 4
Wolinella_succinogenes_DSM_1740 7 6
Helicobacter_cetorum_MIT_00-7128 3 3
Helicobacter_bizzozeronii_CIII-1 3 3
Helicobacter_hepaticus_ATCC_51449 7 7
Helicobacter_mustelae_12198 4 4
Helicobacter_felis_ATCC_49179 4 4
Helicobacter_cinaedi_PAGU611 5 5
Helicobacter_acinonychis_str._Sheeba 4 4
Helicobacter_pylori_B38 4 4
Nitratiruptor_sp._SB155-2 3 3
Desulfarculus_baarsii_DSM_2075 9 6
Syntrophus_aciditrophicus_SB 3 3
Desulfurivibrio_alkaliphilus_AHT2 6 4
Desulfotalea_psychrophila_LSv54 6 4
Desulfobulbus_propionicus_DSM_2032 6 6
Desulfatibacillum_alkenivorans_AK-01 4 4
Desulfobacterium_autotrophicum_HRM2 3 3
Desulfohalobium_retbaense_DSM_5692 4 4
Desulfomicrobium_baculatum_DSM_4028 5 5
Desulfovibrio_piezophilus 7 7
Desulfovibrio_aespoeensis_Aspo-2 8 8
Lawsonia_intracellularis_PHE/MN1-00 4 4
Desulfovibrio_magneticus_RS-1 9 8
Desulfovibrio_alaskensis_G20 7 7
Desulfovibrio_vulgaris_subsp._vulgaris_DP4 7 6
Desulfovibrio_salexigens_DSM_2638 10 10
Desulfovibrio_desulfuricans_subsp._desulfuricans_str._ATCC_27774 5 5
Desulfovibrio_africanus_str._Walvis_Bay 7 7
Hippea_maritima_DSM_10411 4 3
Geobacter_daltonii_FRC-32 4 4
Geobacter_sp._M21 6 6
Geobacter_uraniireducens_Rf4 3 3
Geobacter_lovleyi_SZ 4 4
Geobacter_bemidjiensis_Bem 5 5
Geobacter_sulfurreducens_KN400 3 3
Geobacter_metallireducens_GS-15 4 4
Pelobacter_propionicus_DSM_2379 3 3
Pelobacter_carbinolicus_DSM_2380 6 6
Anaeromyxobacter_dehalogenans_2CP-1 4 4
Dechloromonas_aromatica_RCB 4 3
Thauera_sp._MZ1T 3 3
Azoarcus_sp._KH32C 5 5
Azoarcus_sp._BH72 5 5
Aromatoleum_aromaticum_EbN1 1 1
Dechlorosoma_suillum_PS 6 5
Pseudogulbenkiania_sp._NH8B 6 6
Laribacter_hongkongensis_HLHK9 3 3
Chromobacterium_violaceum_ATCC_12472 8 8
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 4 3
Methylibium_petroleiphilum_PM1 4 4
Thiomonas_arsenitoxydans 4 3
Thiomonas_intermedia_K12 4 3
Rubrivivax_gelatinosus_IL144 9 8
Leptothrix_cholodnii_SP-6 4 4
Burkholderia_phytofirmans_PsJN 4 3
Burkholderia_phymatum_STM815 4 3
Burkholderia_xenovorans_LB400 4 3
Ralstonia_eutropha_JMP134 4 3
Cupriavidus_taiwanensis_LMG_19424 4 3
Cupriavidus_metallidurans_CH34 6 4
Cupriavidus_necator_N-1 4 3
Ralstonia_eutropha_H16 4 3
Ralstonia_pickettii_12D 6 5
Ralstonia_solanacearum_CFBP2957 4 3
Burkholderia_sp._RPE64 4 3
Burkholderia_sp._CCGE1002 4 3
Burkholderia_thailandensis_E264 7 6
Burkholderia_pseudomallei_1106a 4 3
Burkholderia_mallei_SAVP1 4 3
Burkholderia_ambifaria_AMMD 4 3
Burkholderia_cenocepacia_HI2424 4 3
Burkholderia_multivorans_ATCC_17616 4 3
Burkholderia_vietnamiensis_G4 5 3
Burkholderia_gladioli_BSR3 5 4
Burkholderia_glumae_BGR1 8 7
Verminephrobacter_eiseniae_EF01-2 5 5
Alicycliphilus_denitrificans_K601 4 4
Delftia_sp._Cs1-4 6 6
Delftia_acidovorans_SPH-1 4 4
Variovorax_paradoxus_S110 4 3
Rhodoferax_ferrireducens_T118 5 4
Acidovorax_ebreus_TPSY 4 4
Acidovorax_sp._KKS102 4 4
Acidovorax_sp._JS42 5 5
Acidovorax_citrulli_AAC00-1 4 4
Acidovorax_avenae_subsp._avenae_ATCC_19860 4 4
Comamonas_testosteroni_CNB-2 4 4
Herminiimonas_arsenicoxydans 5 3
Collimonas_fungivorans_Ter331 4 3
Janthinobacterium_sp._Marseille 4 3
Herbaspirillum_seropedicae_SmR1 4 3
Pusillimonas_sp._T7-7 3 3
Bordetella_petrii_DSM_12804 3 3
Bordetella_avium_197N 3 3
Bordetella_pertussis_Tohama_I 4 3
Bordetella_parapertussis_12822 4 3
Bordetella_bronchiseptica_RB50 4 3
Achromobacter_xylosoxidans_A8 3 3
Achromobacter_xylosoxidans 6 5
Thiobacillus_denitrificans_ATCC_25259 5 3
Nitrosospira_multiformis_ATCC_25196 4 3
Nitrosomonas_sp._Is79A3 4 3
Nitrosomonas_eutropha_C91 3 3
Nitrosomonas_europaea_ATCC_19718 3 3
Sideroxydans_lithotrophicus_ES-1 4 3
Gallionella_capsiferriformans_ES-2 4 3
Methylotenera_versatilis_301 4 3
Methylotenera_mobilis_JLW8 4 3
Methylovorus_sp._MP688 4 3
Methylovorus_glucosetrophus_SIP3-4 4 3
Methylobacillus_flagellatus_KT 4 3
Magnetococcus_marinus_MC-1 18 18
Parvularcula_bermudensis_HTCC2503 4 4
Asticcacaulis_excentricus_CB_48 5 5
Brevundimonas_subvibrioides_ATCC_15264 5 5
Caulobacter_sp._K31 8 8
Caulobacter_crescentus_NA1000 9 9
Caulobacter_segnis_ATCC_21756 9 9
Phenylobacterium_zucineum_HLK1 5 5
Sphingopyxis_alaskensis_RB2256 3 3
Novosphingobium_sp._PP1Y 4 4
Novosphingobium_aromaticivorans_DSM_12444 1 1
Sphingobium_sp._SYK-6 3 3
Sphingobium_japonicum_UT26S 3 3
Sphingobium_chlorophenolicum_L-1 3 3
Sphingomonas_sp._MM-1 9 9
Sphingomonas_wittichii_RW1 4 4
Zymomonas_mobilis_subsp._mobilis_NCIMB_11163 3 3
Maricaulis_maris_MCS10 8 8
Hirschia_baltica_ATCC_49814 8 8
Hyphomonas_neptunium_ATCC_15444 3 3
Dinoroseobacter_shibae_DFL_12 3 3
Phaeobacter_gallaeciensis_2.10 3 3
Pseudovibrio_sp._FO-BEG1 7 7
Jannaschia_sp._CCS1 3 3
Ruegeria_sp._TM1040 8 8
Ruegeria_pomeroyi_DSS-3 3 3
Ketogulonicigenium_vulgare_Y25 4 4
Ketogulonigenium_vulgarum_WSH-001 3 3
Roseobacter_litoralis_Och_149 3 3
Roseobacter_denitrificans_OCh_114 3 3
Rhodobacter_sphaeroides_ATCC_17029 6 5
Rhodobacter_capsulatus_SB_1003 2 2
Paracoccus_denitrificans_PD1222 3 3
Rhodospirillum_photometricum_DSM_122 4 4
Tistrella_mobilis_KA081020-065 4 4
Magnetospirillum_magneticum_AMB-1 3 3
Rhodospirillum_centenum_SW 5 5
Rhodospirillum_rubrum_F11 6 6
Azospirillum_lipoferum_4B 12 10
Azospirillum_sp._B510 10 9
Azospirillum_brasilense_Sp245 11 10
Gluconacetobacter_diazotrophicus_PAl_5 3 3
Acidiphilium_multivorum_AIU301 3 3
Acidiphilium_cryptum_JF-5 2 2
Gluconobacter_oxydans_621H 5 4
Polymorphum_gilvum_SL003B-26A1 13 13
Micavibrio_aeruginosavorus_ARL-13 5 5
Candidatus_Puniceispirillum_marinum_IMCC1322 4 3
Candidatus_Midichloria_mitochondrii_IricVA 2 1
Azorhizobium_caulinodans_ORS_571 5 5
Methylobacterium_chloromethanicum_CM4 11 9
Methylobacterium_extorquens_AM1 8 7
Methylobacterium_sp._4-46 14 11
Methylobacterium_populi_BJ001 10 8
Methylobacterium_nodulans_ORS_2060 4 3
Methylobacterium_radiotolerans_JCM_2831 10 10
Parvibaculum_lavamentivorans_DS-1 5 5
Ochrobactrum_anthropi_ATCC_49188 3 3
Brucella_microti_CCM_4915 3 3
Brucella_pinnipedialis_B2/94 2 2
Brucella_canis_ATCC_23365 3 3
Brucella_suis_ATCC_23445 3 3
Brucella_melitensis_ATCC_23457 3 3
Brucella_ovis_ATCC_25840 3 3
Brucella_abortus_S19 3 3
Sinorhizobium_fredii_NGR234 6 6
Sinorhizobium_medicae_WSM419 6 6
Sinorhizobium_meliloti_AK83 6 6
Genome_sequence_of_Rhizobium_sp._strain_IRBG74 6 6
Rhizobium_etli_CIAT_652 9 9
Rhizobium_leguminosarum_bv._viciae_3841 11 11
Agrobacterium_tumefaciens_str._C58 6 6
Agrobacterium_radiobacter_K84 7 7
Agrobacterium_sp._H13-3 5 5
Agrobacterium_vitis_S4 9 9
Candidatus_Liberibacter_asiaticus_str._psy62 3 3
Mesorhizobium_sp._BNC1 4 4
Mesorhizobium_opportunistum_WSM2075 4 4
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 4 4
Mesorhizobium_loti_MAFF303099 4 4
Methylocella_silvestris_BL2 3 3
Beijerinckia_indica_subsp._indica_ATCC_9039 3 3
Pelagibacterium_halotolerans_B2 5 4
Rhodomicrobium_vannielii_ATCC_17100 3 3
Hyphomicrobium_sp._MC1 3 3
Hyphomicrobium_denitrificans_ATCC_51888 3 3
Oligotropha_carboxidovorans_OM4 3 3
Rhodopseudomonas_palustris_BisA53 14 11
Nitrobacter_winogradskyi_Nb-255 6 4
Nitrobacter_hamburgensis_X14 7 4
Bradyrhizobium_japonicum_USDA_110 17 13
Bradyrhizobium_sp._ORS_278 10 9
Bartonella_clarridgeiae_73 3 3
Bartonella_bacilliformis_KC583 3 3
Saccharophagus_degradans_2-40 4 4
Teredinibacter_turnerae_T7901 6 4
Cellvibrio_japonicus_Ueda107 5 4
Oceanimonas_sp._GK1 7 6
Aeromonas_veronii_B565 6 5
Aeromonas_salmonicida_subsp._salmonicida_A449 6 5
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 5 5
Aliivibrio_salmonicida_LFI1238 8 8
Vibrio_fischeri_MJ11 8 8
Vibrio_sp._Ex25 12 12
Vibrio_harveyi_ATCC_BAA-1116 12 12
Vibrio_parahaemolyticus_RIMD_2210633 12 12
Vibrio_splendidus_LGP32 7 7
Vibrio_anguillarum_775 7 7
Vibrio_furnissii_NCTC_11218 15 15
Vibrio_vulnificus_MO6-24/O 8 8
Vibrio_cholerae_O395 7 7
Photobacterium_profundum_SS9 8 8
Psychromonas_ingrahamii_37 5 5
Psychromonas_sp._CNPT3 5 4
Idiomarina_loihiensis_L2TR 4 3
Ferrimonas_balearica_DSM_9799 8 7
Shewanella_piezotolerans_WP3 8 7
Shewanella_loihica_PV-4 5 4
Shewanella_halifaxensis_HAW-EB4 8 7
Shewanella_sediminis_HAW-EB3 9 8
Shewanella_denitrificans_OS217 8 7
Shewanella_pealeana_ATCC_700345 8 7
Shewanella_oneidensis_MR-1 5 4
Shewanella_baltica_OS185 7 6
Shewanella_woodyi_ATCC_51908 6 5
Shewanella_sp._MR-4 5 4
Shewanella_amazonensis_SB2B 5 4
Shewanella_violacea_DSS12 5 5
Shewanella_frigidimarina_NCIMB_400 5 4
Shewanella_putrefaciens_CN-32 9 8
Colwellia_psychrerythraea_34H 4 4
Pseudoalteromonas_sp._SM9913 8 7
Pseudoalteromonas_atlantica_T6c 6 6
Pseudoalteromonas_haloplanktis_TAC125 5 4
Glaciecola_sp._4H-3-7+YE-5 7 6
Glaciecola_nitratireducens_FR1064 8 7
Marinobacter_adhaerens_HP15 5 4
Marinobacter_sp._BSs20148 6 4
Marinobacter_hydrocarbonoclasticus_ATCC_49840 4 4
Marinobacter_aquaeolei_VT8 4 4
Alteromonas_sp._SN2 7 6
Alteromonas_macleodii_str._'Deep_ecotype' 7 7
Hahella_chejuensis_KCTC_2396 8 5
Marinomonas_posidonica_IVIA-Po-181 5 4
Marinomonas_sp._MWYL1 4 4
Marinomonas_mediterranea_MMB-1 6 5
Chromohalobacter_salexigens_DSM_3043 3 3
Halomonas_elongata_DSM_2581 4 4
Methylomicrobium_alcaliphilum 4 4
Methylomonas_methanica_MC09 4 4
Rhodanobacter_denitrificans 4 3
Frateuria_aurantia_DSM_6220 4 3
Pseudoxanthomonas_spadix_BD-a59 5 4
Pseudoxanthomonas_suwonensis_11-1 4 3
Stenotrophomonas_maltophilia_K279a 6 5
Xanthomonas_axonopodis_pv._citri_str._306 4 3
Xanthomonas_albilineans_GPE_PC73 4 3
Xanthomonas_oryzae_pv._oryzae_PXO99A 8 6
Xanthomonas_campestris_pv._campestris_str._B100 5 4
Halothiobacillus_neapolitanus_c2 3 3
Alkalilimnicola_ehrlichii_MLHE-1 4 4
Thioalkalivibrio_sulfidophilus_HL-EbGr7 3 3
Thioalkalivibrio_sp._K90mix 5 5
Halorhodospira_halophila_SL1 4 4
Allochromatium_vinosum_DSM_180 5 3
Thiocystis_violascens_DSM_198 8 5
Nitrosococcus_watsonii_C-113 3 3
Nitrosococcus_halophilus_Nc4 3 3
Nitrosococcus_oceani_ATCC_19707 3 3
Legionella_pneumophila_str._Corby 4 3
gamma_proteobacterium_HdN1 5 4
Photorhabdus_asymbiotica 3 3
Photorhabdus_luminescens_subsp._laumondii_TTO1 3 3
Xenorhabdus_bovienii_SS-2004 3 3
Xenorhabdus_nematophila_ATCC_19061 3 3
Providencia_stuartii_MRSN_2154 3 3
Proteus_mirabilis_HI4320 4 4
Edwardsiella_ictaluri_93-146 7 7
Edwardsiella_tarda_EIB202 4 4
Rahnella_sp._Y9602 3 3
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 3 3
Yersinia_pseudotuberculosis_IP_31758 7 7
Yersinia_pestis_Pestoides_F 7 7
Yersinia_enterocolitica_subsp._enterocolitica_8081 5 5
Serratia_sp._AS12 3 3
Serratia_sp._ATCC_39006 4 3
Serratia_plymuthica_AS9 3 3
Serratia_proteamaculans_568 3 3
Dickeya_dadantii_Ech703 3 3
Dickeya_zeae_Ech1591 4 3
Pectobacterium_wasabiae_WPP163 3 3
Pectobacterium_sp._SCC3193 3 3
Pectobacterium_atrosepticum_SCRI1043 4 4
Pectobacterium_carotovorum_subsp._carotovorum_PC1 3 3
Sodalis_glossinidius_str._'morsitans' 3 3
Pantoea_sp._At-9b 3 3
Pantoea_vagans_C9-1 4 4
Pantoea_ananatis_LMG_20103 10 9
Wigglesworthia_glossinidia_endosymbiont_of_Glossina_brevipalpis 3 3
Erwinia_tasmaniensis_Et1/99 3 3
Erwinia_sp._Ejp617 6 6
Erwinia_billingiae_Eb661 3 3
Erwinia_pyrifoliae_Ep1/96 6 6
Erwinia_amylovora_ATCC_49946 6 6
Cronobacter_turicensis_z3032 4 4
Cronobacter_sakazakii_ES15 4 4
Enterobacteriaceae_bacterium_strain_FGI_57 3 3
Shigella_sonnei_Ss046 3 3
Shigella_flexneri_5_str._8401 2 2
Shigella_dysenteriae_Sd197 1 1
Shigella_boydii_CDC_3083-94 4 3
Salmonella_bongori_NCTC_12419 3 3
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594 4 4
Enterobacter_aerogenes_KCTC_2190 3 3
Escherichia_fergusonii_ATCC_35469 3 3
Escherichia_coli_'BL21-Gold(DE3)pLysS_AG' 3 3
Enterobacter_sp._R4-368 10 10
Enterobacter_sp._638 3 3
Enterobacter_asburiae_LF7a 3 3
Enterobacter_cloacae_subsp._dissolvens_SDM 6 6
Citrobacter_rodentium_ICC168 5 5
Citrobacter_koseri_ATCC_BAA-895 7 7
Azotobacter_vinelandii_DJ 3 3
Pseudomonas_sp._TKP 4 3
Pseudomonas_sp._UW4 4 3
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 4 3
Pseudomonas_entomophila_L48 4 3
Pseudomonas_syringae_pv._tomato_str._DC3000 4 3
Pseudomonas_stutzeri_A1501 5 4
Pseudomonas_fulva_12-X 7 6
Pseudomonas_putida_F1 4 3
Pseudomonas_protegens_Pf-5 4 3
Pseudomonas_fluorescens_SBW25 4 3
Pseudomonas_mendocina_ymp 7 6
Pseudomonas_aeruginosa_UCBPP-PA14 4 3
Pseudomonas_sp._VLB120 4 3
Methylophaga_sp._JAM1 4 4
Cycloclasticus_sp._P1 4 3
Thiomicrospira_crunogena_XCL-2 5 5

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   2 2
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   1 1
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1 1
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   1 1
Paracoccidioides_brasiliensis_Pb03_ 1 1
Schizosaccharomyces_pombe_972h-_ 1 1
Batrachochytrium_dendrobatidis_JAM81_ 1 1
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   2 2
Mycoplasma_gallisepticum_NC08_2008.031-4-3P 1 1
Mycoplasma_gallisepticum_CA06_2006.052-5-2P 1 1
Mycoplasma_gallisepticum_NC06_2006.080-5-2P 1 1
Mycoplasma_gallisepticum_WI01_2001.043-13-2P 1 1
Mycoplasma_gallisepticum_NY01_2001.047-5-1P 1 1
Mycoplasma_gallisepticum_NC96_1596-4-2P 1 1
Mycoplasma_gallisepticum_NC95_13295-2-2P 1 1
Mycoplasma_gallisepticum_VA94_7994-1-7P 1 1
Streptomyces_fulvissimus_DSM_40593 1 1
Actinoplanes_friuliensis_DSM_7358 3 3
Rhodococcus_erythropolis_CCM2595 1 1
Leifsonia_xyli_subsp._cynodontis_DSM_46306 2 2
Chthonomonas_calidirosea_T49 4 4
Eubacterium_siraeum_V10Sc8a 3 3
Clostridium_thermocellum_DSM_1313 5 5
[Clostridium]_stercorarium_Clostridiu_subsp._stercorarium_DSM_8532 4 4
Sulfobacillus_acidophilus_TPY 3 3
Clostridium_acidurici_9a 4 4
Desulfosporosinus_meridiei_DSM_13257 4 3
Desulfitobacterium_dichloroeliminans_LMG_P-21439 4 4
Desulfitobacterium_hafniense_DCB-2 5 4
Desulfotomaculum_gibsoniae_DSM_7213 4 4
Clostridium_difficile_BI1 3 3
Clostridium_difficile_R20291 3 3
Clostridium_difficile_CD196 3 3
Roseburia_intestinalis_XB6B4 7 7
Candidatus_Arthromitus_sp._SFB-rat-Yit 7 7
Candidatus_Arthromitus_sp._SFB-mouse-Yit 6 6
Clostridium_saccharobutylicum_DSM_13864 6 5
Clostridium_autoethanogenum_DSM_10061 7 7
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 9 7
Clostridium_kluyveri_NBRC_12016 4 4
Clostridium_tetani_genome_12124569 5 5
Clostridium_pasteurianum_BC1 5 5
Clostridium_botulinum_H04402_065 7 7
Clostridium_botulinum_BKT015925 5 5
Clostridium_botulinum_F_str._230613 5 5
Clostridium_botulinum_F_str._Langeland 6 6
Clostridium_botulinum_E3_str._Alaska_E43 6 6
Clostridium_botulinum_B1_str._Okra 6 6
Clostridium_botulinum_Ba4_str._657 7 7
Clostridium_botulinum_A2_str._Kyoto 6 6
Clostridium_botulinum_A3_str._Loch_Maree 8 8
Clostridium_botulinum_A_str._Hall 8 8
Clostridium_botulinum_A_str._ATCC_19397 8 8
Clostridium_acetobutylicum_DSM_1731 6 6
Clostridium_acetobutylicum_EA_2018 6 6
Thermoanaerobacterium_saccharolyticum_JW/SL-YS485 3 3
Thermoanaerobacterium_thermosaccharolyticum_M0795 3 3
Thermacetogenium_phaeum_DSM_12270 3 3
Thermoanaerobacter_sp._X513 3 3
Halobacteroides_halobius_DSM_5150 5 5
Enterococcus_casseliflavus_EC20 3 3
Exiguobacterium_antarcticum_B7 4 4
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_Tc-4-1 3 3
Thermobacillus_composti_KWC4 3 3
Paenibacillus_sp._Y412MC10 3 3
Paenibacillus_mucilaginosus_KNP414 6 6
Paenibacillus_mucilaginosus_K02 9 9
Paenibacillus_larvae_subsp._larvae_DSM_25430 3 3
Paenibacillus_polymyxa_CR1 3 3
Paenibacillus_polymyxa_SC2 4 4
Paenibacillus_polymyxa_E681 3 3
Listeria_monocytogenes_EGD_sequence 3 3
Listeria_monocytogenes_N53-1 3 3
Listeria_monocytogenes_La111 3 3
Listeria_monocytogenes_serotype_4b_str._LL195 3 3
Listeria_monocytogenes_07PF0776 3 3
Listeria_monocytogenes_M7 3 3
Listeria_monocytogenes_J1-220 3 3
Listeria_monocytogenes_J1816 3 3
Listeria_monocytogenes_SLCC2376 3 3
Listeria_monocytogenes_SLCC5850 3 3
Listeria_monocytogenes_ATCC_19117 3 3
Listeria_monocytogenes_L312 3 3
Listeria_monocytogenes_SLCC2479 3 3
Listeria_monocytogenes_SLCC7179 3 3
Listeria_monocytogenes_SLCC2540 3 3
Listeria_monocytogenes_SLCC2378 3 3
Listeria_monocytogenes_serotype_1/2b_str._SLCC2755 3 3
Listeria_monocytogenes_serotype_1/2c_str._SLCC2372 3 3
Listeria_monocytogenes_serotype_7_str._SLCC2482 3 3
Listeria_monocytogenes_08-5578 3 3
Listeria_monocytogenes_08-5923 3 3
Listeria_monocytogenes_L99 3 3
Listeria_monocytogenes_HCC23 3 3
Listeria_monocytogenes_10403S 3 3
Listeria_monocytogenes_J0161 3 3
Listeria_monocytogenes_Finland_1998 3 3
Listeria_monocytogenes_FSL_R2-561 3 3
Listeria_monocytogenes_serotype_4b_str._F2365 3 3
Listeria_monocytogenes_EGD-e 3 3
Geobacillus_sp._C56-T3 4 4
Geobacillus_sp._Y4.1MC1 4 4
Geobacillus_sp._Y412MC52 4 4
Geobacillus_sp._Y412MC61 4 4
Amphibacillus_xylanus_NBRC_15112 4 4
Bacillus_amyloliquefaciens_subsp._plantarum_sequencing 3 3
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5033 3 3
Bacillus_amyloliquefaciens_subsp._plantarum_AS43.3 3 3
Bacillus_amyloliquefaciens_subsp._plantarum_YAU_B9601-Y2 3 3
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5113 3 3
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5036 3 3
Bacillus_amyloliquefaciens_subsp._plantarum_CAU_B946 3 3
Bacillus_amyloliquefaciens_LFB112 3 3
Bacillus_amyloliquefaciens_CC178 3 3
Bacillus_amyloliquefaciens_Y2 3 3
Bacillus_amyloliquefaciens_IT-45 3 3
Bacillus_amyloliquefaciens_XH7 3 3
Bacillus_amyloliquefaciens_LL3 3 3
Bacillus_amyloliquefaciens_TA208 3 3
Bacillus_amyloliquefaciens_DSM_7 3 3
Bacillus_licheniformis_9945A 3 3
Bacillus_subtilis_PY79 4 4
Bacillus_subtilis_XF-1 3 3
Bacillus_subtilis_QB928 4 4
Bacillus_subtilis_BSn5 3 3
Bacillus_subtilis_subsp._subtilis_str._BAB-1 4 4
Bacillus_subtilis_subsp._subtilis_str._BSP1 4 4
Bacillus_subtilis_subsp._subtilis_str._RO-NN-1 4 4
Bacillus_subtilis_subsp._subtilis_6051-HGW 4 4
Bacillus_subtilis_subsp._spizizenii_TU-B-10 4 4
Bacillus_subtilis_subsp._spizizenii_str._W23 3 3
Bacillus_subtilis_subsp._natto_BEST195 4 4
Bacillus_licheniformis_DSM_13_=_ATCC_14580 3 3
Bacillus_infantis_NRRL_B-14911 4 4
Bacillus_cereus_subsp._cytotoxis_NVH_391-98 4 4
Bacillus_toyonensis_BCT-7112 4 4
Bacillus_thuringiensis_HD-771 4 4
Bacillus_thuringiensis_HD-789 3 3
Bacillus_thuringiensis_MC28 4 4
Bacillus_thuringiensis_serovar_chinensis_CT-43 4 4
Bacillus_thuringiensis_YBT-1518 3 3
Bacillus_thuringiensis_Bt407 4 4
Bacillus_thuringiensis_serovar_konkukian_str._97-27 4 4
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 4 4
Bacillus_thuringiensis_BMB171 6 6
Bacillus_thuringiensis_serovar_finitimus_YBT-020 4 4
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 4 4
Bacillus_cereus_FRI-35 4 4
Bacillus_cereus_biovar_anthracis_str._CI 4 4
Bacillus_cereus_AH820 4 4
Bacillus_cereus_AH187 4 4
Bacillus_cereus_B4264 4 4
Bacillus_cereus_G9842 3 3
Bacillus_cereus_Q1 4 4
Bacillus_cereus_F837/76 3 3
Bacillus_cereus_NC7401 4 4
Bacillus_cereus_E33L 4 4
Bacillus_cereus_ATCC_14579 6 6
Bacillus_cereus_ATCC_10987 4 4
Bacillus_anthracis_str._H9401 4 4
Bacillus_anthracis_str._CDC_684 4 4
Bacillus_anthracis_str._'Ames_Ancestor' 2 2
Bacillus_anthracis_str._Sterne 2 2
Bacillus_anthracis_str._Ames 2 2
Bacillus_megaterium_WSH-002 4 4
Bacillus_megaterium_QM_B1551 4 4
Bacillus_coagulans_36D1 3 3
Salinibacter_ruber_DSM_13855 4 4
Rhodothermus_marinus_SG0.5JP17-172 3 3
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 7 7
Leptospira_interrogans_serovar_Lai_str._56601 6 6
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 7 7
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 5 5
Brachyspira_pilosicoli_WesB 5 5
Brachyspira_pilosicoli_B2904 5 5
Brachyspira_pilosicoli_P43/6/78 5 5
Borrelia_garinii_NMJW1 3 3
Borrelia_garinii_BgVir 3 3
Borrelia_afzelii_HLJ01 3 3
Borrelia_afzelii_PKo 3 3
Borrelia_burgdorferi_CA382 3 3
Borrelia_burgdorferi_JD1 3 3
Borrelia_burgdorferi_N40 3 3
Borrelia_burgdorferi_ZS7 3 3
Borrelia_miyamotoi_LB-2001 3 3
Treponema_pedis_str._T_A4 5 5
Treponema_pallidum_str._Fribourg-Blanc 5 5
Treponema_pallidum_subsp._pertenue_str._Gauthier 5 5
Treponema_pallidum_subsp._pertenue_str._CDC2 5 5
Treponema_pallidum_subsp._pertenue_str._SamoaD 5 5
Treponema_pallidum_subsp._pallidum_str._Mexico_A 5 5
Treponema_pallidum_subsp._pallidum_str._Chicago 5 5
Treponema_pallidum_subsp._pallidum_DAL-1 5 5
Treponema_pallidum_subsp._pallidum_str._Nichols 5 5
Spirochaeta_thermophila_DSM_6578 5 5
Thermotoga_maritima_MSB8 4 4
Leptospirillum_ferriphilum_ML-04 4 4
Bdellovibrio_exovorus_JSS 7 7
Bdellovibrio_bacteriovorus_str._Tiberius 8 8
Arcobacter_butzleri_7h1h 5 5
Arcobacter_butzleri_ED-1 5 5
Campylobacter_jejuni_Waterborne_C.jejuni_Outbreak 6 5
Campylobacter_jejuni_RM1221 6 5
Campylobacter_jejuni_subsp._jejuni_00-2544 3 3
Campylobacter_jejuni_subsp._jejuni_00-2538 3 3
Campylobacter_jejuni_subsp._jejuni_00-2426 3 3
Campylobacter_jejuni_subsp._jejuni_00-2425 5 5
Campylobacter_jejuni_subsp._jejuni_PT14 5 5
Campylobacter_jejuni_subsp._jejuni_ICDCCJ07001 6 5
Campylobacter_jejuni_subsp._jejuni_S3 6 5
Campylobacter_jejuni_subsp._jejuni_M1 8 7
Campylobacter_jejuni_subsp._jejuni_IA3902 6 5
Campylobacter_jejuni_subsp._jejuni_81116 6 5
Campylobacter_jejuni_subsp._jejuni_81-176 5 5
Campylobacter_jejuni_subsp._jejuni_NCTC_11168-BN148 5 5
Campylobacter_jejuni_subsp._jejuni_NCTC_11168_=_ATCC_700819 5 5
Campylobacter_coli_76339 6 6
Campylobacter_coli_15-537360 5 5
Campylobacter_coli_CVM_N29710 6 5
Helicobacter_cetorum_MIT_99-5656 3 3
Helicobacter_pylori_BM012S 4 4
Helicobacter_pylori_BM012A 4 4
Helicobacter_pylori_SouthAfrica20 5 5
Helicobacter_pylori_UM298 4 4
Helicobacter_pylori_UM066 4 4
Helicobacter_pylori_UM037 4 4
Helicobacter_pylori_UM299 4 4
Helicobacter_pylori_UM032 4 4
Helicobacter_pylori_OK310 4 4
Helicobacter_pylori_OK113 4 4
Helicobacter_pylori_Rif2 4 4
Helicobacter_pylori_Rif1 4 4
Helicobacter_pylori_HUP-B14 4 4
Helicobacter_pylori_PeCan18 4 4
Helicobacter_pylori_Shi169 4 4
Helicobacter_pylori_Shi112 4 4
Helicobacter_pylori_Shi417 4 4
Helicobacter_pylori_XZ274 4 4
Helicobacter_pylori_Aklavik86 4 4
Helicobacter_pylori_Aklavik117 4 4
Helicobacter_pylori_SNT49 4 4
Helicobacter_pylori_Puno135 4 4
Helicobacter_pylori_Puno120 4 4
Helicobacter_pylori_ELS37 4 4
Helicobacter_pylori_Gambia94/24 4 4
Helicobacter_pylori_SouthAfrica7 4 4
Helicobacter_pylori_India7 4 4
Helicobacter_pylori_Lithuania75 3 3
Helicobacter_pylori_2017 4 4
Helicobacter_pylori_2018 5 5
Helicobacter_pylori_908 4 4
Helicobacter_pylori_F57 4 4
Helicobacter_pylori_F30 4 4
Helicobacter_pylori_F16 4 4
Helicobacter_pylori_Sat464 4 4
Helicobacter_pylori_Cuz20 4 4
Helicobacter_pylori_PeCan4 4 4
Helicobacter_pylori_SJM180 4 4
Helicobacter_pylori_B8 4 4
Helicobacter_pylori_52 4 4
Helicobacter_pylori_v225d 4 4
Helicobacter_pylori_83 4 4
Helicobacter_pylori_35A 4 4
Helicobacter_pylori_P12 4 4
Helicobacter_pylori_G27 4 4
Helicobacter_pylori_Shi470 4 4
Helicobacter_pylori_HPAG1 4 4
Helicobacter_pylori_51 4 4
Helicobacter_pylori_F32 4 4
Helicobacter_pylori_J99 4 4
Helicobacter_pylori_26695 4 4
Helicobacter_pylori_26695 4 4
Desulfocapsa_sulfexigens_DSM_10523 5 4
Desulfobacula_toluolica_Tol2 4 3
Lawsonia_intracellularis_N343 4 4
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 10 10
Desulfovibrio_vulgaris_RCH1 6 6
Desulfovibrio_vulgaris_str._'Miyazaki_F' 9 9
Desulfovibrio_vulgaris_str._Hildenborough 6 6
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 7 7
Desulfovibrio_desulfuricans_ND132 8 8
Geobacter_sp._M18 5 5
Geobacter_sulfurreducens_PCA 3 3
Anaeromyxobacter_sp._K 4 4
Anaeromyxobacter_dehalogenans_2CP-C 4 4
Burkholderia_phenoliruptrix_BR3459a 4 3
Pandoraea_pnomenusa_3kgm 4 3
Ralstonia_pickettii_12J 3 3
Ralstonia_solanacearum_FQY_4 4 3
Ralstonia_solanacearum_Po82 4 3
Ralstonia_solanacearum_PSI07 4 3
Ralstonia_solanacearum_CMR15 4 3
Ralstonia_solanacearum_GMI1000 4 3
Burkholderia_sp._YI23 4 3
Burkholderia_sp._CCGE1003 4 3
Burkholderia_sp._CCGE1001 4 3
Burkholderia_sp._KJ006 4 3
Burkholderia_thailandensis_MSMB121 4 3
Burkholderia_pseudomallei_MSHR305 7 6
Burkholderia_pseudomallei_NCTC_13179 7 6
Burkholderia_pseudomallei_BPC006 4 3
Burkholderia_pseudomallei_1026b 4 3
Burkholderia_pseudomallei_MSHR346 4 3
Burkholderia_pseudomallei_668 7 6
Burkholderia_pseudomallei_1710b 4 3
Burkholderia_pseudomallei_K96243 4 3
Burkholderia_mallei_NCTC_10229 4 3
Burkholderia_mallei_NCTC_10247 4 3
Burkholderia_mallei_ATCC_23344 4 3
Burkholderia_lata 4 3
Burkholderia_ambifaria_MC40-6 4 3
Burkholderia_cenocepacia_MC0-3 7 6
Burkholderia_cenocepacia_AU_1054 4 3
Burkholderia_cenocepacia_J2315 4 3
Burkholderia_multivorans_ATCC_17616 4 3
Burkholderia_cepacia_GG4 4 3
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 4 4
Alicycliphilus_denitrificans_BC 4 4
Variovorax_paradoxus_B4 4 3
Bordetella_pertussis_CS 4 3
Bordetella_parapertussis_18323 4 3
Bordetella_parapertussis_Bpp5 1 1
Bordetella_bronchiseptica_MO149 4 3
Bordetella_bronchiseptica_253 4 3
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 6 5
Nitrosomonas_sp._AL212 4 2
Sulfuricella_denitrificans_skB26 5 3
Caulobacter_crescentus_CB15 8 8
Zymomonas_mobilis_subsp._mobilis_ATCC_29191 3 3
Zymomonas_mobilis_subsp._mobilis_CP4 3 3
Zymomonas_mobilis_subsp._mobilis_ATCC_10988 3 3
Zymomonas_mobilis_subsp._mobilis_ZM4 3 3
Zymomonas_mobilis_subsp._pomaceae_ATCC_29192 3 3
Phaeobacter_gallaeciensis_DSM_17395 3 3
Phaeobacter_gallaeciensis_DSM_26640 3 3
Leisingera_methylohalidivorans_DSM_14336 4 4
Octadecabacter_antarcticus_307 3 3
Octadecabacter_arcticus_238 4 4
Rhodobacter_sphaeroides_KD131 6 5
Rhodobacter_sphaeroides_ATCC_17025 6 5
Rhodobacter_sphaeroides_2.4.1 6 5
Paracoccus_aminophilus_JCM_7686 1 1
Magnetospirillum_gryphiswaldense_MSR-1_v2 9 9
Rhodospirillum_rubrum_ATCC_11170 6 6
Gluconacetobacter_diazotrophicus_PAl_5 3 3
Gluconobacter_oxydans_H24 3 3
Micavibrio_aeruginosavorus_EPB 6 5
Methylobacterium_extorquens_DM4 7 7
Methylobacterium_extorquens_PA1 10 8
Brucella_ceti_TE10759-12 3 3
Brucella_ceti_TE28753-12 3 3
Brucella_canis_HSK_A52141 3 3
Brucella_suis_VBI22 3 3
Brucella_suis_1330 3 3
Brucella_suis_1330 3 3
Brucella_melitensis_NI 3 3
Brucella_melitensis_M5-90 3 3
Brucella_melitensis_M28 3 3
Brucella_melitensis_bv._1_str._16M 3 3
Brucella_abortus_A13334 3 3
Brucella_melitensis_biovar_Abortus_2308 3 3
Brucella_abortus_bv._1_str._9-941 3 3
Sinorhizobium_fredii_USDA_257 7 7
Sinorhizobium_fredii_HH103 6 6
Sinorhizobium_meliloti_2011 6 6
Sinorhizobium_meliloti_GR4 6 6
Sinorhizobium_meliloti_Rm41 6 6
Sinorhizobium_meliloti_SM11 7 7
Sinorhizobium_meliloti_BL225C 6 6
Sinorhizobium_meliloti_1021 6 6
Rhizobium_etli_CFN_42 9 9
Rhizobium_etli_bv._mimosae_str._Mim1 8 8
Rhizobium_tropici_CIAT_899 7 7
Rhizobium_leguminosarum_bv._trifolii_WSM2304 11 11
Rhizobium_leguminosarum_bv._trifolii_WSM1325 11 11
Liberibacter_crescens_BT-1 3 3
Candidatus_Liberibacter_solanacearum_CLso-ZC1 2 2
Candidatus_Liberibacter_americanus_str._Sao_Paulo 2 2
Candidatus_Liberibacter_asiaticus_str._gxpsy 3 3
Mesorhizobium_australicum_WSM2073 4 4
Hyphomicrobium_nitrativorans_NL23 5 5
Hyphomicrobium_denitrificans_1NES1 3 3
Oligotropha_carboxidovorans_OM5 3 3
Oligotropha_carboxidovorans_OM5 3 3
Rhodopseudomonas_palustris_DX-1 10 7
Rhodopseudomonas_palustris_TIE-1 11 8
Rhodopseudomonas_palustris_HaA2 9 7
Rhodopseudomonas_palustris_BisB5 6 4
Rhodopseudomonas_palustris_BisB18 17 14
Rhodopseudomonas_palustris_CGA009 11 8
Bradyrhizobium_sp._S23321 14 12
Bradyrhizobium_sp._BTAi1 13 12
Bradyrhizobium_oligotrophicum_S58 11 9
Bradyrhizobium_japonicum_USDA_6 10 9
Simiduia_agarivorans_SA1_=_DSM_21679 8 4
Aeromonas_hydrophila_ML09-119 6 5
Vibrio_fischeri_ES114 8 8
Vibrio_sp._EJY3 7 7
Vibrio_parahaemolyticus_BB22OP 12 12
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 12 12
Vibrio_anguillarum_Listonella_anguillarum_M3 7 7
Vibrio_nigripulchritudo_VibrioScope 10 10
Vibrio_vulnificus_CMCP6 8 8
Vibrio_vulnificus_YJ016 8 8
Vibrio_cholerae_LMA3984-4 5 5
Vibrio_cholerae_M66-2 7 7
Vibrio_cholerae_O395 7 7
Vibrio_cholerae_IEC224 7 7
Vibrio_cholerae_O1_str._2010EL-1786 7 7
Vibrio_cholerae_MJ-1236 7 7
Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 7 7
Idiomarina_loihiensis_GSL_199 4 3
Shewanella_sp._W3-18-1 9 8
Shewanella_sp._ANA-3 5 4
Shewanella_baltica_BA175 11 10
Shewanella_baltica_OS678 7 6
Shewanella_baltica_OS117 11 10
Shewanella_baltica_OS223 5 4
Shewanella_baltica_OS195 7 6
Shewanella_baltica_OS155 11 10
Shewanella_sp._MR-7 5 4
Shewanella_putrefaciens_200 5 4
Glaciecola_psychrophila_170 8 8
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 7 7
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 9 9
Alteromonas_macleodii_str._'Ionian_Sea_U8' 9 8
Alteromonas_macleodii_str._'Ionian_Sea_U7' 9 8
Alteromonas_macleodii_str._'Ionian_Sea_U4' 9 8
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 9 8
Alteromonas_macleodii_str._'English_Channel_615' 9 8
Alteromonas_macleodii_AltDE1 9 9
Alteromonas_macleodii_str._'English_Channel_673' 7 6
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 8 7
Alteromonas_macleodii_str._'Black_Sea_11' 8 7
Alteromonas_macleodii_ATCC_27126 7 6
Alcanivorax_dieselolei_B5 3 3
Thalassolituus_oleivorans_MIL-1 5 3
Stenotrophomonas_maltophilia_D457 6 5
Stenotrophomonas_maltophilia_JV3 6 5
Stenotrophomonas_maltophilia_R551-3 6 5
Xanthomonas_citri_subsp._citri_Aw12879 4 3
Xanthomonas_campestris_pv._vesicatoria_str._85-10 4 3
Xanthomonas_axonopodis_pv._citrumelo_F1 4 3
Xanthomonas_axonopodis_Xac29-1 4 3
Xanthomonas_oryzae_pv._oryzicola_BLS256 4 3
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 4 3
Xanthomonas_oryzae_pv._oryzae_KACC_10331 4 3
Xanthomonas_campestris_pv._raphani_756C 4 3
Xanthomonas_campestris_pv._campestris_str._8004 4 3
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 4 3
Thioflavicoccus_mobilis_8321 4 3
Legionella_pneumophila_str._Paris 3 3
Legionella_pneumophila_str._Lens 4 3
Legionella_pneumophila_subsp._pneumophila_LPE509 4 3
Legionella_pneumophila_subsp._pneumophila_str._Thunder_Bay 4 3
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 4 3
Legionella_pneumophila_subsp._pneumophila 4 3
Legionella_pneumophila_subsp._pneumophila 4 3
Legionella_pneumophila_subsp._pneumophila_ATCC_43290 4 3
Legionella_pneumophila_2300/99_Alcoy 4 3
Proteus_mirabilis_BB2000 4 4
Morganella_morganii_subsp._morganii_KT 4 4
Edwardsiella_tarda_C07-087 4 4
Edwardsiella_tarda_FL6-60 4 4
Rahnella_aquatilis_HX2 3 3
Yersinia_pseudotuberculosis_PB1/+ 7 7
Yersinia_pseudotuberculosis_YPIII 5 5
Yersinia_pseudotuberculosis_IP_32953 6 6
Yersinia_pestis_biovar_Microtus_str._91001 4 4
Yersinia_pestis_A1122 8 8
Yersinia_pestis_Z176003 8 8
Yersinia_pestis_D182038 8 8
Yersinia_pestis_D106004 8 8
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 6 6
Yersinia_pestis_Nepal516 6 6
Yersinia_pestis_Antiqua 8 8
Yersinia_pestis_Angola 10 10
Yersinia_pestis_CO92 8 8
Yersinia_pestis_KIM10+ 6 6
Yersinia_enterocolitica_subsp._palearctica_105.5R(r) 8 8
Yersinia_enterocolitica_subsp._palearctica_Y11 8 8
Serratia_sp._AS13 3 3
Serratia_plymuthica_S13 3 3
Serratia_plymuthica_4Rx13 3 3
Serratia_marcescens_FGI94 3 3
Serratia_marcescens_WW4 3 3
Serratia_liquefaciens_ATCC_27592 3 3
Dickeya_dadantii_Ech586 4 3
Dickeya_dadantii_3937 4 3
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 3 3
Pantoea_ananatis_LMG_5342 8 8
Pantoea_ananatis_PA13 9 9
Pantoea_ananatis_AJ13355 9 9
Wigglesworthia_glossinidia_endosymbiont_of_Glossina_morsitans_morsitans_(Yale_colony) 3 3
Buchnera_aphidicola_str._Ak_(Acyrthosiphon_kondoi) 1 1
Buchnera_aphidicola_str._Ua_(Uroleucon_ambrosiae) 1 1
Buchnera_aphidicola_str._LL01_(Acyrthosiphon_pisum) 1 1
Buchnera_aphidicola_str._TLW03_(Acyrthosiphon_pisum) 1 1
Buchnera_aphidicola_str._JF99_(Acyrthosiphon_pisum) 1 1
Buchnera_aphidicola_str._Tuc7_(Acyrthosiphon_pisum) 1 1
Buchnera_aphidicola_str._5A_(Acyrthosiphon_pisum) 1 1
Buchnera_aphidicola_str._APS_(Acyrthosiphon_pisum) 1 1
Buchnera_aphidicola_str._Sg_(Schizaphis_graminum) 2 2
Erwinia_pyrifoliae_DSM_12163 6 6
Erwinia_amylovora_CFBP1430 6 6
Cronobacter_sakazakii_CMCC_45402 4 4
Cronobacter_sakazakii_SP291 4 4
Cronobacter_sakazakii_ATCC_BAA-894 4 4
Shigella_sonnei_53G 3 3
Shigella_flexneri_2002017 1 1
Shigella_flexneri_2a_str._2457T 1 1
Shigella_flexneri_2a_str._301 1 1
Shigella_dysenteriae_1617 5 5
Shigella_boydii_Sb227 3 3
Salmonella_bongori_N268-08 3 3
Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 3 3
Salmonella_enterica_subsp._enterica_serovar_4,[5],12:i:-_str._08-1736 3 3
Salmonella_enterica_subsp._enterica_serovar_Javiana_str._CFSAN001992 4 4
Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 4 4
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 3 3
Salmonella_enterica_subsp._enterica_serovar_Enteritidis_str._P125109 3 3
Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 3 3
Salmonella_enterica_subsp._enterica_serovar_Newport_str._USMARC-S3124.1 4 4
Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL254 4 4
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853 3 3
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_var._5-_str._CFSAN001921 4 4
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 4 4
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 4 4
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._UK-1 4 4
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 4 4
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 5 5
Salmonella_enterica_The_genome_of__subsp._enterica_serovar_Typhimurium_str._DT2 4 4
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 4 4
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 4 4
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 4 4
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 4 4
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 4 4
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._P-stx-12 3 3
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty21a 3 3
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18 3 3
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2 3 3
Salmonella_enterica_serovar_Bovismorbificans_genomics 2 2
Salmonella_enterica_subsp._enterica_serovar_Bareilly_str._CFSAN000189 4 4
Salmonella_enterica_subsp._enterica_serovar_Agona_str._24249 3 3
Salmonella_enterica_subsp._enterica_serovar_Agona_str._SL483 3 3
Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._2007-60-3289-1 4 4
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_B_str._SPB7 4 4
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._AKU_12601 4 4
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._ATCC_9150 4 4
Salmonella_enterica_subsp._enterica_Serovar_Heidelberg_str._CFSAN002069 4 4
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._B182 3 3
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578 4 4
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._SL476 4 4
Salmonella_enterica_subsp._enterica_serovar_Pullorum_str._S06004 2 2
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._CDC1983-67 2 2
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._RKS5078 2 2
Salmonella_enterica_subsp._enterica_serovar_Thompson_str._RM6836 4 4
Salmonella_enterica_subsp._enterica_serovar_Gallinarum_str._287/91 2 2
Enterobacter_aerogenes_EA1509E 3 3
Escherichia_coli_E24377A 3 3
Escherichia_coli_E._coli_PMV-1 4 3
Escherichia_coli_JJ1886 6 6
Escherichia_coli_LY180 7 6
Escherichia_coli_APEC_O78 3 3
Escherichia_coli_O7:K1_str._CE10 4 3
Escherichia_coli_O104:H4_str._2009EL-2050 3 3
Escherichia_coli_O104:H4_str._2009EL-2071 3 3
Escherichia_coli_O104:H4_str._2011C-3493 3 3
Escherichia_coli_NA114 6 6
Escherichia_coli_P12b 7 7
Escherichia_coli_str._'clone_D_i2' 3 3
Escherichia_coli_str._'clone_D_i14' 3 3
Escherichia_coli_UM146 4 3
Escherichia_coli_042 6 6
Escherichia_coli_Xuzhou21 4 3
Escherichia_coli_IHE3034 4 3
Escherichia_coli_UMNK88 3 3
Escherichia_coli_O83:H1_str._NRG_857C 3 3
Escherichia_coli_ABU_83972 3 3
Escherichia_coli_KO11FL 7 6
Escherichia_coli_KO11FL 7 6
Escherichia_coli_LF82 3 3
Escherichia_coli_ED1a 3 3
Escherichia_coli_IAI39 4 3
Escherichia_coli_UMN026 6 6
Escherichia_coli_55989 3 3
Escherichia_coli_S88 4 3
Escherichia_coli_IAI1 4 3
Escherichia_coli_W 7 6
Escherichia_coli_W 7 6
Escherichia_coli_DH1 3 3
Escherichia_coli_DH1 3 3
Escherichia_coli_ATCC_8739 6 6
Escherichia_coli_BL21(DE3) 2 2
Escherichia_coli_BL21(DE3) 2 2
Escherichia_coli_SMS-3-5 6 6
Escherichia_coli_SE15 3 3
Escherichia_coli_SE11 3 3
Escherichia_coli_APEC_O1 4 3
Escherichia_coli_O103:H2_str._12009 3 3
Escherichia_coli_UTI89 4 3
Escherichia_coli_536 3 3
Escherichia_coli_HS 3 3
Escherichia_coli_ETEC_H10407 3 3
Escherichia_coli_O55:H7_str._RM12579 4 3
Escherichia_coli_O55:H7_str._CB9615 4 3
Escherichia_coli_O26:H11_str._11368 6 6
Escherichia_coli_CFT073 3 3
Escherichia_coli_O111:H-_str._11128 5 5
Escherichia_coli_O127:H6_str._E2348/69 3 3
Escherichia_coli_O157:H7_str._TW14359 4 3
Escherichia_coli_O157:H7_str._EC4115 4 3
Escherichia_coli_O157:H7_str._Sakai 4 3
Escherichia_coli_O157:H7_str._EDL933 4 3
Escherichia_coli_BW2952 3 3
Escherichia_coli_str._K-12_substr._MG1655 3 3
Escherichia_coli_str._K-12_substr._W3110 3 3
Escherichia_coli_str._K-12_substr._DH10B 2 2
Escherichia_coli_B_str._REL606 2 2
Enterobacter_cloacae_SCF1 3 3
Enterobacter_cloacae_EcWSU1 3 3
Enterobacter_cloacae_subsp._cloacae_ENHKU01 3 3
Enterobacter_cloacae_subsp._cloacae_NCTC_9394 4 4
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 6 6
Azotobacter_vinelandii_CA6 3 3
Azotobacter_vinelandii_CA 3 3
Pseudomonas_denitrificans_ATCC_13867 4 3
Pseudomonas_syringae_pv._phaseolicola_1448A 4 3
Pseudomonas_syringae_pv._syringae_B728a 4 3
Pseudomonas_stutzeri_CCUG_29243 4 3
Pseudomonas_stutzeri_DSM_10701 6 6
Pseudomonas_stutzeri_DSM_4166 7 6
Pseudomonas_stutzeri_RCH2 6 6
Pseudomonas_stutzeri_ATCC_17588_=_LMG_11199 3 3
Pseudomonas_monteilii_SB3101 5 3
Pseudomonas_monteilii_SB3078 5 3
Pseudomonas_putida_H8234 4 3
Pseudomonas_putida_HB3267 4 3
Pseudomonas_putida_NBRC_14164 4 3
Pseudomonas_putida_DOT-T1E 4 3
Pseudomonas_putida_S16 4 3
Pseudomonas_putida_BIRD-1 4 3
Pseudomonas_putida_W619 4 3
Pseudomonas_putida_ND6 4 3
Pseudomonas_putida_KT2440 5 3
Pseudomonas_putida_GB-1 4 3
Pseudomonas_protegens_CHA0 4 3
Pseudomonas_poae_RE*1-1-14 4 3
Pseudomonas_fluorescens_F113 7 6
Pseudomonas_fluorescens_A506 4 3
Pseudomonas_fluorescens_R124 4 3
Pseudomonas_fluorescens_Pf0-1 4 3
Pseudomonas_resinovorans_NBRC_106553 8 8
Pseudomonas_mendocina_NK-01 7 6
Pseudomonas_aeruginosa_SCV20265 4 3
Pseudomonas_aeruginosa_MTB-1 4 3
Pseudomonas_aeruginosa_LES431 4 3
Pseudomonas_aeruginosa_RP73 4 3
Pseudomonas_aeruginosa_B136-33 4 3
Pseudomonas_aeruginosa_PA1R 4 3
Pseudomonas_aeruginosa_PA1 4 3
Pseudomonas_aeruginosa_DK2 4 3
Pseudomonas_aeruginosa_NCGM2.S1 3 2
Pseudomonas_aeruginosa_M18 4 3
Pseudomonas_aeruginosa_LESB58 4 3
Pseudomonas_aeruginosa_PA7 4 3
Pseudomonas_aeruginosa_PAO1 4 3
Methylophaga_sp._JAM7 5 4
Cycloclasticus_zancles_7-ME 5 3

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number   Proteins
Oreochromis_niloticus_69_1.0   (Nile tilapia)   1 1

Others
Genome     Number   Proteins
Ricinus_communis__(Early_assembly)   (Castor bean)   7 7
Nicotiana_benthamiana_0.4.4_(Early_draft) 1 1
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 12 12
NCBI_plasmid_sequences_(Plasmids) 108 95
NCBI_2017_08_genome 193615 179964
NCBI_viral_sequences_(Viral) 3 3
TargetDB__(Targets) 82 78
Protein_Data_Bank_(all_PDB_sequenc) 429 427
STRING_v9.0.5_(STRING) 2460 2274
PDB_chains_(SCOP_1.75)_(PDB) 2 2
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 46 46
Uniprot_2018_03_genome 53281 49585

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.