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Domain combinations for Cell wall binding repeat superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Cell wall binding repeat domain in that genome.

Complete genomes
Genome     Number   Proteins
Saccoglossus_kowalevskii_v3.0 9 9
Danio_rerio_76_9   (Zebrafish)   2 2
Octopus_bimaculoides_280 1 1
Lottia_gigantea_   (Owl limpet)   5 5
Capitella_sp._I_ 1 1
Daphnia_pulex_   (Common water flea)   1 1
Caenorhabditis_briggsae_2 1 1
Mnemiopsis_leidyi   (Sea walnut)   1 1
Thelohanellus_kitauei 3 3
Nematostella_vectensis_1.0   (Starlet sea anemone)   4 4
Capsaspora_owczarzaki_ATCC_30864_ 1 1
Paxillus_rubicundulus_Ve08.2h10_v1.0 1 1
Sclerotinia_sclerotiorum_ 1 1
Zygosaccharomyces_rouxii_ 1 1
Picea_abies   (Norway spruce)   1 1
Sorghum_bicolor_   (Sorghum)   2 2
Volvox_carteri_v199 1 1
Pythium_arrhenomanes_ATCC_12531_22 1 1
Fragilariopsis_cylindrus 1 1
Pseudanabaena_sp._PCC_7367 3 2
Acaryochloris_marina_MBIC11017 1 1
Synechococcus_sp._PCC_6312 1 1
Microcoleus_sp._PCC_7113 1 1
Trichodesmium_erythraeum_IMS101 2 1
Geitlerinema_sp._PCC_7407 1 1
Gloeobacter_violaceus_PCC_7421 2 2
Rivularia_sp._PCC_7116 1 1
Calothrix_sp._PCC_7507 4 3
Anabaena_variabilis_ATCC_29413 2 2
Nostoc_punctiforme_PCC_73102 1 1
Nostoc_sp._PCC_7120 1 1
Anabaena_sp._90 1 1
Cryptobacterium_curtum_DSM_15641 7 6
Eggerthella_lenta_DSM_2243 2 1
Slackia_heliotrinireducens_DSM_20476 32 22
Olsenella_uli_DSM_7084 2 1
Atopobium_parvulum_DSM_20469 5 3
Bifidobacterium_dentium_Bd1 6 5
Arcanobacterium_haemolyticum_DSM_20595 1 1
Actinomyces_sp._F0330 8 5
Anaerococcus_prevotii_DSM_20548 3 2
Acidaminococcus_intestini_RyC-MR95 1 1
Acidaminococcus_fermentans_DSM_20731 1 1
Selenomonas_ruminantium_subsp._lactilytica_TAM6421 2 1
Erysipelothrix_rhusiopathiae_str._Fujisawa 6 3
Natranaerobius_thermophilus_JW/NM-WN-LF 6 3
Clostridium_clariflavum_DSM_19732 3 2
Eubacterium_siraeum 1 1
Clostridium_thermocellum_ATCC_27405 2 1
Faecalibacterium_prausnitzii 1 1
Ruminococcus_sp. 5 5
Ruminococcus_bromii 4 3
Ruminococcus_albus_7 8 3
butyrate-producing_bacterium_SS3/4 35 31
butyrate-producing_bacterium_SM4/1 12 10
Syntrophobotulus_glycolicus_DSM_8271 4 4
Eubacterium_eligens_ATCC_27750 1 1
Clostridium_difficile_630 9 3
Clostridium_saccharolyticum_WM1 42 38
Clostridium_lentocellum_DSM_5427 2 1
[Ruminococcus]_obeum 13 12
[Ruminococcus]_torques 5 3
Eubacterium_rectale_ATCC_33656 6 3
Coprococcus_sp._ART55/1 4 2
Roseburia_hominis_A2-183 1 1
Butyrivibrio_proteoclasticus_B316 14 11
Butyrivibrio_fibrisolvens 4 3
Alkaliphilus_metalliredigens_QYMF 3 1
Clostridium_sp._BNL1100 1 1
Clostridium_novyi_NT 3 1
Clostridium_ljungdahlii_DSM_13528 5 2
Clostridium_kluyveri_DSM_555 2 2
Clostridium_beijerinckii_NCIMB_8052 73 66
Clostridium_perfringens_ATCC_13124 17 7
Clostridium_botulinum_A_str._ATCC_3502 3 1
Clostridium_acetobutylicum_ATCC_824 18 2
Mahella_australiensis_50-1_BON 1 1
Caldicellulosiruptor_obsidiansis_OB47 2 2
Caldicellulosiruptor_kronotskyensis_2002 3 2
Caldicellulosiruptor_hydrothermalis_108 3 2
Caldicellulosiruptor_owensensis_OL 2 2
Caldicellulosiruptor_lactoaceticus_6A 5 3
Caldicellulosiruptor_kristjanssonii_177R1B 5 3
Caldicellulosiruptor_saccharolyticus_DSM_8903 4 4
Caldicellulosiruptor_bescii_DSM_6725 8 5
Melissococcus_plutonius_DAT561 1 1
Weissella_koreensis_KACC_15510 1 1
Oenococcus_oeni_PSU-1 4 1
Leuconostoc_sp._C2 6 4
Leuconostoc_kimchii_IMSNU_11154 12 6
Leuconostoc_citreum_KM20 19 7
Leuconostoc_mesenteroides_subsp._mesenteroides_ATCC_8293 26 10
Leuconostoc_gasicomitatum_LMG_18811 14 7
Lactobacillus_salivarius_CECT_5713 15 5
Lactobacillus_ruminis_ATCC_27782 10 3
Lactobacillus_fermentum_IFO_3956 1 1
Lactobacillus_amylovorus_GRL1118 1 1
Lactobacillus_reuteri_DSM_20016 13 9
Lactobacillus_acidophilus_30SC 2 2
Pediococcus_claussenii_ATCC_BAA-344 6 2
Lactococcus_lactis_subsp._cremoris_MG1363 1 1
Streptococcus_intermedius_JTH08 1 1
Streptococcus_gallolyticus_UCN34 6 2
Streptococcus_pseudopneumoniae_IS7493 34 31
Streptococcus_dysgalactiae_subsp._equisimilis_GGS_124 1 1
Streptococcus_infantarius_subsp._infantarius_CJ18 3 1
Streptococcus_mitis_B6 25 22
Streptococcus_pneumoniae_P1031 16 12
Streptococcus_mutans_NN2025 12 5
Streptococcus_sanguinis_SK36 5 2
Streptococcus_salivarius_57.I 76 19
Streptococcus_oralis_Uo5 17 8
Streptococcus_gordonii_str._Challis_substr._CH1 9 4
Exiguobacterium_sp._AT1b 3 1
Paenibacillus_sp._JDR-2 2 2
Paenibacillus_terrae_HPL-003 1 1
Paenibacillus_polymyxa_M1 1 1
Bacillus_weihenstephanensis_KBAB4 2 1
Bacillus_cellulosilyticus_DSM_2522 1 1
Chloroherpeton_thalassium_ATCC_35110 4 3
Prosthecochloris_aestuarii_DSM_271 1 1
Haliscomenobacter_hydrossis_DSM_1100 4 3
Saprospira_grandis_str._Lewin 3 3
Niastella_koreensis_GR20-10 1 1
Chitinophaga_pinensis_DSM_2588 3 3
Rhodothermus_marinus_DSM_4252 1 1
Flexibacter_litoralis_DSM_6794 5 3
Dyadobacter_fermentans_DSM_18053 1 1
Cytophaga_hutchinsonii_ATCC_33406 4 3
Spirosoma_linguale_DSM_74 2 1
Paludibacter_propionicigenes_WB4 1 1
Prevotella_ruminicola_23 1 1
Alistipes_finegoldii_DSM_17242 1 1
Bacteroides_helcogenes_P_36-108 1 1
Solitalea_canadensis_DSM_3403 1 1
Sphingobacterium_sp._21 1 1
Fluviicola_taffensis_DSM_16823 2 1
Owenweeksia_hongkongensis_DSM_17368 6 3
Lacinutrix_sp._5H-3-7-4 4 2
Croceibacter_atlanticus_HTCC2559 1 1
Aequorivita_sublithincola_DSM_14238 2 1
Zobellia_galactanivorans 2 1
Flavobacteriaceae_bacterium_3519-10 2 2
Capnocytophaga_canimorsus_Cc5 3 2
Weeksella_virosa_DSM_16922 1 1
Flavobacterium_psychrophilum_JIP02/86 2 1
Flavobacterium_johnsoniae_UW101 2 1
Planctomyces_limnophilus_DSM_3776 1 1
Fretibacterium_fastidiosum 2 2
Leptospira_interrogans_serovar_Lai_str._IPAV 4 3
Treponema_azotonutricium_ZAS-9 2 1
Caldisericum_exile_AZM16c01 3 2
Candidatus_Chloracidobacterium_thermophilum_B 1 1
Candidatus_Solibacter_usitatus_Ellin6076 1 1
Candidatus_Koribacter_versatilis_Ellin345 1 1
Arcobacter_nitrofigilis_DSM_7299 1 1
Campylobacter_hominis_ATCC_BAA-381 1 1
Campylobacter_lari_RM2100 2 2
Campylobacter_curvus_525.92 1 1
Geobacter_daltonii_FRC-32 2 2
Neisseria_lactamica_020-06 1 1
Polaromonas_naphthalenivorans_CJ2 1 1
Achromobacter_xylosoxidans_A8 2 2
Achromobacter_xylosoxidans 2 2
Rhizobium_etli_CIAT_652 1 1
Gallibacterium_anatis_UMN179 1 1
Photorhabdus_asymbiotica 1 1
Rahnella_sp._Y9602 1 1
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 1 1
Psychrobacter_sp._PRwf-1 1 1
Moraxella_catarrhalis_RH4 1 1
Methylophaga_sp._JAM1 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   1 1
Chamaesiphon_minutus_PCC_6605 1 1
Crinalium_epipsammum_PCC_9333 7 4
Oscillatoria_nigro-viridis_PCC_7112 4 3
Arthrospira_platensis_NIES-39 1 1
Cyanothece_sp._PCC_7425 2 2
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 2 2
Calothrix_parietina_Calothrix_sp._PCC_6303 3 2
Cylindrospermum_stagnale_PCC_7417 9 5
Adlercreutzia_equolifaciens_DSM_19450 8 6
Bifidobacterium_longum_subsp._longum_JCM_1217 3 1
Actinomyces_graevenitzii_C83_ 3 2
Actinomyces_odontolyticus_ATCC_17982 25 22
Erysipelothrix_rhusiopathiae_SY1027 6 3
Clostridium_thermocellum_DSM_1313 2 1
Faecalibacterium_prausnitzii_L2-6 1 1
Desulfitobacterium_hafniense_DCB-2 1 1
Clostridium_difficile_BI1 11 3
Clostridium_difficile_R20291 11 3
Clostridium_difficile_CD196 11 3
Clostridium_saccharolyticum_Clostridium_cf._saccharolyticum_K10 26 23
Coprococcus_catus_GD/7 15 5
Clostridium_sp._SY8519 1 1
Clostridium_saccharobutylicum_DSM_13864 77 69
Clostridium_autoethanogenum_DSM_10061 5 2
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 92 83
Clostridium_kluyveri_NBRC_12016 2 2
Clostridium_perfringens_SM101 8 4
Clostridium_perfringens_str._13 8 6
Clostridium_pasteurianum_BC1 1 1
Clostridium_botulinum_H04402_065 1 1
Clostridium_botulinum_BKT015925 3 3
Clostridium_botulinum_F_str._230613 3 1
Clostridium_botulinum_F_str._Langeland 3 1
Clostridium_botulinum_E3_str._Alaska_E43 41 37
Clostridium_botulinum_B1_str._Okra 2 1
Clostridium_botulinum_Ba4_str._657 2 1
Clostridium_botulinum_A2_str._Kyoto 3 1
Clostridium_botulinum_A3_str._Loch_Maree 2 1
Clostridium_botulinum_A_str._Hall 3 1
Clostridium_botulinum_A_str._ATCC_19397 3 1
Clostridium_acetobutylicum_DSM_1731 18 2
Clostridium_acetobutylicum_EA_2018 18 2
Melissococcus_plutonius_ATCC_35311 1 1
Enterococcus_faecalis_V583 1 1
Leuconostoc_carnosum_JB16 12 4
Leuconostoc_mesenteroides_subsp._mesenteroides_J18 21 9
Leuconostoc_gelidum_JB7 15 7
Lactobacillus_salivarius_UCC118 14 5
Lactobacillus_fermentum_F-6 2 2
Lactobacillus_fermentum_CECT_5716 3 3
Lactobacillus_amylovorus_GRL_1112 1 1
Lactobacillus_reuteri_TD1 2 2
Lactobacillus_reuteri_I5007 3 2
Lactobacillus_reuteri_JCM_1112 13 9
Lactobacillus_reuteri_SD2112 2 2
Lactobacillus_plantarum_16 6 2
Lactobacillus_plantarum_subsp._plantarum_ST-III 3 1
Lactobacillus_helveticus_R0052 1 1
Lactobacillus_delbrueckii_subsp._bulgaricus_ND02 1 1
Lactobacillus_delbrueckii_subsp._bulgaricus_2038 1 1
Lactococcus_lactis_subsp._lactis_KLDS_4.0325 4 4
Lactococcus_lactis_subsp._lactis_IO-1 1 1
Lactococcus_lactis_subsp._lactis_CV56 1 1
Lactococcus_lactis_subsp._lactis_KF147 1 1
Lactococcus_lactis_subsp._lactis_Il1403 3 3
Lactococcus_lactis_subsp._cremoris_KW2 1 1
Lactococcus_lactis_subsp._cremoris_UC509.9 1 1
Lactococcus_lactis_subsp._cremoris_A76 1 1
Lactococcus_lactis_subsp._cremoris_NZ9000 1 1
Lactococcus_lactis_subsp._cremoris_SK11 1 1
Streptococcus_intermedius_B196 1 1
Streptococcus_intermedius_C270 1 1
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_BAA-2069 8 2
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_43143 7 2
Streptococcus_lutetiensis_033 1 1
Streptococcus_dysgalactiae_subsp._equisimilis_167 1 1
Streptococcus_dysgalactiae_subsp._equisimilis_AC-2713 1 1
Streptococcus_dysgalactiae_subsp._equisimilis_ATCC_12394 1 1
Streptococcus_dysgalactiae_subsp._equisimilis_RE378 1 1
Streptococcus_pneumoniae_A026 17 13
Streptococcus_pneumoniae_ST556 18 15
Streptococcus_pneumoniae_SPNA45 13 11
Streptococcus_pneumoniae_SPN994039 16 11
Streptococcus_pneumoniae_SPN994038 16 11
Streptococcus_pneumoniae_SPN034183 16 11
Streptococcus_pneumoniae_SPN034156 18 12
Streptococcus_pneumoniae_INV104 14 12
Streptococcus_pneumoniae_INV200 19 15
Streptococcus_pneumoniae_OXC141 17 11
Streptococcus_pneumoniae_gamPNI0373 17 12
Streptococcus_pneumoniae_AP200 19 15
Streptococcus_pneumoniae_ATCC_700669 18 14
Streptococcus_pneumoniae_TCH8431/19A 17 14
Streptococcus_pneumoniae_CGSP14 21 17
Streptococcus_pneumoniae_G54 19 16
Streptococcus_pneumoniae_JJA 21 18
Streptococcus_pneumoniae_70585 19 15
Streptococcus_pneumoniae_Hungary19A-6 18 14
Streptococcus_pneumoniae_Taiwan19F-14 18 14
Streptococcus_pneumoniae_D39 19 13
Streptococcus_pneumoniae_670-6B 21 17
Streptococcus_pneumoniae_R6 17 11
Streptococcus_pneumoniae_TIGR4 19 14
Streptococcus_mutans_GS-5 12 5
Streptococcus_mutans_LJ23 10 4
Streptococcus_mutans_UA159 12 5
Streptococcus_salivarius_CCHSS3 80 20
Streptococcus_salivarius_JIM8777 69 18
Paenibacillus_polymyxa_CR1 1 1
Paenibacillus_polymyxa_SC2 1 1
Paenibacillus_polymyxa_E681 1 1
Bacillus_toyonensis_BCT-7112 16 8
Bacillus_thuringiensis_MC28 22 10
Bacillus_thuringiensis_YBT-1518 1 1
Bacillus_cereus_AH820 2 1
Bacillus_cereus_AH187 2 1
Bacillus_cereus_NC7401 2 1
Bacillus_cereus_E33L 2 1
Chlorobium_phaeobacteroides_BS1 2 2
Rhodothermus_marinus_SG0.5JP17-172 1 1
Echinicola_vietnamensis_DSM_17526 1 1
Alistipes_shahii_WAL_8301 1 1
Bacteroides_xylanisolvens_XB1A 1 1
Nonlabens_dokdonensis_DSW-6 3 1
Psychroflexus_torquis_ATCC_700755 1 1
Leptospira_interrogans_serovar_Lai_str._56601 4 3
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 4 3
Campylobacter_coli_15-537360 1 1
Campylobacter_coli_CVM_N29710 1 1
Variovorax_paradoxus_EPS 1 1
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 2 2
Rahnella_aquatilis_HX2 1 1
Methanobacterium_sp._SWAN-1 1 1

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Longest transcript per gene
Genome     Number   Proteins
Danio_rerio_69_9   (Zebrafish)   1 1

Others
Genome     Number   Proteins
NCBI_plasmid_sequences_(Plasmids) 56 36
TargetDB__(Targets) 61 27
PDB_chains_(SCOP_1.75)_(PDB) 9 9
UniProt__viral_sequences_(Viral) 13 13
NCBI_viral_sequences_(Viral) 13 13
Protein_Data_Bank_(all_PDB_sequenc) 87 70
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 124 120
STRING_v9.0.5_(STRING) 759 525
Uniprot_2018_03_genome 25934 18052
NCBI_2017_08_genome 182285 141432

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