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Domain combinations for Cloacin translocation domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Cloacin translocation domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Candidatus_Saccharimonas_aalborgensis 1 1
Vibrio_harveyi_ATCC_BAA-1116 1 1
Vibrio_parahaemolyticus_RIMD_2210633 1 1
Vibrio_anguillarum_775 1 1
Marinobacter_aquaeolei_VT8 1 1
Photorhabdus_asymbiotica 8 8
Photorhabdus_luminescens_subsp._laumondii_TTO1 3 3
Xenorhabdus_bovienii_SS-2004 1 1
Providencia_stuartii_MRSN_2154 2 2
Proteus_mirabilis_HI4320 2 2
Rahnella_sp._Y9602 1 1
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 2 2
Yersinia_pseudotuberculosis_IP_31758 2 2
Yersinia_pestis_Pestoides_F 1 1
Serratia_proteamaculans_568 1 1
Pectobacterium_wasabiae_WPP163 1 1
Pectobacterium_sp._SCC3193 1 1
Pectobacterium_atrosepticum_SCRI1043 1 1
Pantoea_sp._At-9b 1 1
Erwinia_tasmaniensis_Et1/99 1 1
Enterobacteriaceae_bacterium_strain_FGI_57 1 1
Enterobacter_aerogenes_KCTC_2190 1 1
Enterobacter_asburiae_LF7a 1 1
Enterobacter_cloacae_subsp._dissolvens_SDM 1 1
Citrobacter_koseri_ATCC_BAA-895 2 2
Pseudomonas_sp._TKP 1 1
Pseudomonas_sp._UW4 1 1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1 1
Pseudomonas_syringae_pv._tomato_str._DC3000 2 2
Pseudomonas_fluorescens_SBW25 1 1
Pseudomonas_aeruginosa_UCBPP-PA14 2 2

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Strains
Genome     Number   Proteins
Vibrio_anguillarum_Listonella_anguillarum_M3 1 1
Rahnella_aquatilis_HX2 2 2
Yersinia_pseudotuberculosis_PB1/+ 2 2
Yersinia_pseudotuberculosis_YPIII 2 2
Yersinia_pseudotuberculosis_IP_32953 1 1
Yersinia_pestis_biovar_Microtus_str._91001 1 1
Yersinia_pestis_A1122 1 1
Yersinia_pestis_Z176003 2 2
Yersinia_pestis_D182038 2 2
Yersinia_pestis_D106004 2 2
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 2 2
Yersinia_pestis_Nepal516 2 2
Yersinia_pestis_Antiqua 2 2
Yersinia_pestis_Angola 2 2
Yersinia_pestis_CO92 1 1
Yersinia_pestis_KIM10+ 2 2
Yersinia_enterocolitica_subsp._palearctica_105.5R(r) 2 1
Yersinia_enterocolitica_subsp._palearctica_Y11 2 1
Serratia_plymuthica_S13 3 3
Serratia_plymuthica_4Rx13 3 3
Serratia_marcescens_WW4 4 4
Serratia_liquefaciens_ATCC_27592 1 1
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 3 2
Shigella_flexneri_2002017 1 1
Salmonella_bongori_N268-08 1 1
Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 1 1
Klebsiella_pneumoniae_JM45 3 3
Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 1 1
Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 3 3
Klebsiella_pneumoniae_subsp._rhinoscleromatis_SB3432 1 1
Enterobacter_aerogenes_EA1509E 1 1
Escherichia_coli_E._coli_PMV-1 1 1
Escherichia_coli_JJ1886 1 1
Escherichia_coli_NA114 1 1
Escherichia_coli_str._'clone_D_i2' 1 1
Escherichia_coli_str._'clone_D_i14' 1 1
Escherichia_coli_UM146 1 1
Escherichia_coli_IHE3034 1 1
Escherichia_coli_O83:H1_str._NRG_857C 1 1
Escherichia_coli_ABU_83972 1 1
Escherichia_coli_LF82 1 1
Escherichia_coli_ED1a 1 1
Escherichia_coli_S88 1 1
Escherichia_coli_SMS-3-5 1 1
Escherichia_coli_SE15 1 1
Escherichia_coli_APEC_O1 1 1
Escherichia_coli_UTI89 1 1
Escherichia_coli_536 1 1
Escherichia_coli_O111:H-_str._11128 3 2
Enterobacter_cloacae_subsp._cloacae_ENHKU01 1 1
Enterobacter_cloacae_subsp._cloacae_NCTC_9394 1 1
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 3 3
Pseudomonas_syringae_pv._phaseolicola_1448A 1 1
Pseudomonas_syringae_pv._syringae_B728a 3 3
Pseudomonas_monteilii_SB3101 1 1
Pseudomonas_monteilii_SB3078 1 1
Pseudomonas_putida_HB3267 2 2
Pseudomonas_putida_S16 1 1
Pseudomonas_putida_BIRD-1 1 1
Pseudomonas_putida_ND6 1 1
Pseudomonas_putida_KT2440 1 1
Pseudomonas_putida_GB-1 3 3
Pseudomonas_poae_RE*1-1-14 1 1
Pseudomonas_fluorescens_F113 3 3
Pseudomonas_fluorescens_A506 1 1
Pseudomonas_fluorescens_R124 3 3
Pseudomonas_fluorescens_Pf0-1 6 6
Pseudomonas_aeruginosa_SCV20265 2 2
Pseudomonas_aeruginosa_MTB-1 1 1
Pseudomonas_aeruginosa_LES431 1 1
Pseudomonas_aeruginosa_RP73 1 1
Pseudomonas_aeruginosa_B136-33 1 1
Pseudomonas_aeruginosa_PA1R 1 1
Pseudomonas_aeruginosa_PA1 1 1
Pseudomonas_aeruginosa_DK2 1 1
Pseudomonas_aeruginosa_NCGM2.S1 1 1
Pseudomonas_aeruginosa_M18 1 1
Pseudomonas_aeruginosa_LESB58 1 1
Pseudomonas_aeruginosa_PA7 1 1
Pseudomonas_aeruginosa_PAO1 2 2

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Others
Genome     Number   Proteins
Nicotiana_benthamiana_0.4.4_(Early_draft) 1 1
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 1 1
NCBI_plasmid_sequences_(Plasmids) 35 33
PDB_chains_(SCOP_1.75)_(PDB) 3 3
Protein_Data_Bank_(all_PDB_sequenc) 16 16
TargetDB__(Targets) 18 18
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 19 19
STRING_v9.0.5_(STRING) 76 75
Uniprot_2018_03_genome 1638 1582
NCBI_2017_08_genome 12084 11516

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