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Domain combinations for Lamin A/C globular tail domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Lamin A/C globular tail domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   20 20
Pan_troglodytes_76_2.1.4   (Chimpanzee)   5 5
Gorilla_gorilla_76_3.1   (Western gorilla)   7 7
Pongo_abelii_76_2   (Sumatran orangutan)   6 6
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   4 4
Papio_anubis_76   (Olive baboon)   6 6
Macaca_mulatta_76_1   (Rhesus monkey)   8 8
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   10 10
Otolemur_garnettii_76_3   (Small-eared galago)   6 6
Microcebus_murinus_76_1   (Gray mouse lemur)   3 3
Rattus_norvegicus_76_5.0   (Norway rat)   6 6
Mus_musculus_76_38   (House mouse)   12 12
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   5 5
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   8 8
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   5 5
Cavia_porcellus_76_3   (Domestic guinea pig)   7 7
Oryctolagus_cuniculus_76_2   (Rabbit)   4 4
Ochotona_princeps_76   (American pika)   4 4
Tupaia_belangeri_76   (Northern tree shrew)   5 4
Sus_scrofa_76_10.2   (Pig)   5 5
Bos_taurus_76_3.1   (Cattle)   5 5
Ovis_aries_76_3.1   (Sheep)   6 6
Vicugna_pacos_76_1   (Alpaca)   2 2
Tursiops_truncatus_76_1   (Bottlenose dolphin)   5 5
Mustela_putorius_furo_76_1.0   (Domestic ferret)   5 5
Ailuropoda_melanoleuca_76_1   (Giant panda)   6 6
Canis_familiaris_76_3.1   (Dog)   8 8
Felis_catus_76_6.2   (Domestic cat)   5 5
Equus_caballus_76_2   (Horse)   5 5
Myotis_lucifugus_76_2.0   (Little brown bat)   4 4
Pteropus_vampyrus_76_1   (Large flying fox)   4 4
Sorex_araneus_76_1   (European shrew)   3 3
Erinaceus_europaeus_76   (Western European hedgehog)   3 3
Procavia_capensis_76_1   (Cape rock hyrax)   4 4
Loxodonta_africana_76_3   (African savanna elephant)   5 5
Echinops_telfairi_76   (Small Madagascar hedgehog)   3 3
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   4 4
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   3 3
Macropus_eugenii_76_1.0   (Tammar wallaby)   6 5
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   7 7
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   5 5
Ornithorhynchus_anatinus_76_5   (Platypus)   5 5
Saccoglossus_kowalevskii_v3.0 6 6
Petromyzon_marinus_76_7.0   (Sea lamprey)   3 3
Meleagris_gallopavo_76_2   (Turkey)   4 4
Gallus_gallus_76_4   (Chicken)   3 3
Anas_platyrhynchos_76_1.0   (Mallard)   5 5
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   4 4
Ficedula_albicollis_76_1.0   (Collared flycatcher)   4 4
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   7 7
Anolis_carolinensis_76_2.0   (Green anole)   6 6
Xenopus_laevis_   (African clawed frog)   24 24
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   6 6
Latimeria_chalumnae_76_1   (Coelacanth)   5 5
Lepisosteus_oculatus_76   (Spotted gar)   6 6
Gadus_morhua_76_1   (Atlantic cod)   5 5
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   6 6
Takifugu_rubripes_76_4   (Torafugu)   24 23
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   8 8
Oryzias_latipes_76_1   (Japanese medaka)   7 7
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   4 4
Poecilia_formosa_76   (Amazon molly)   3 3
Oreochromis_niloticus_76_1.0   (Nile tilapia)   5 5
Astyanax_mexicanus_76   (Mexican tetra)   4 4
Danio_rerio_76_9   (Zebrafish)   6 6
Ciona_intestinalis_76   (Vase tunicate)   1 1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   6 6
Adineta_vaga 29 29
Octopus_bimaculoides_280 9 9
Crassostrea_gigas_22   (Pacific oyster)   4 4
Lottia_gigantea_   (Owl limpet)   2 2
Helobdella_robusta_ 13 13
Capitella_sp._I_ 3 3
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1 1
Heliconius_melpomene_   (Postman butterfly)   1 1
Bombyx_mori_   (Domestic silkworm)   1 1
Nasonia_vitripennis_   (Jewel wasp)   1 1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   3 3
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1 1
Linepithema_humile_v1.1   (Argentine ant)   1 1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1 1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1 1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1 1
Atta_cephalotes_v1.1 1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1 1
Lucilia_cuprina   (Australian sheep blowfly)   2 2
Drosophila_grimshawi_1.3 2 2
Drosophila_willistoni_1.3 2 2
Drosophila_pseudoobscura_2.13 2 2
Drosophila_persimilis_1.3 2 2
Drosophila_suzukii 2 2
Drosophila_yakuba_1.3 2 2
Drosophila_simulans_1.3 1 1
Drosophila_sechellia_1.3 2 2
Drosophila_melanogaster_76_5   (Fruit fly)   5 5
Drosophila_erecta_1.3 2 2
Drosophila_ananassae_1.3 2 2
Drosophila_virilis_1.2 2 2
Drosophila_mojavensis_1.3 2 2
Megaselia_scalaris_22 1 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   2 2
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   2 2
Anopheles_darlingi_22   (American malaria mosquito)   2 2
Anopheles_gambiae_49_3j   (African malaria mosquito)   2 2
Tribolium_castaneum_3.0   (Red flour beetle)   1 1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1 1
Acyrthosiphon_pisum_   (Pea aphid)   1 1
Rhodnius_prolixus_22 1 1
Daphnia_pulex_   (Common water flea)   2 2
Strigamia_maritima_22 1 1
Sarcoptes_scabiei 1 1
Tetranychus_urticae_   (Two-spotted spider mite)   1 1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1 1
Pristionchus_pacificus_ 5 5
Meloidogyne_incognita_   (Southern root-knot nematode)   7 7
Meloidogyne_hapla_ 2 2
Onchocerca_volvulus_22 5 5
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   9 9
Caenorhabditis_japonica_ 10 9
Caenorhabditis_brenneri_ 10 10
Caenorhabditis_remanei_ 11 11
Caenorhabditis_elegans_76_235   (Roundworm)   25 25
Caenorhabditis_briggsae_2 13 13
Trichinella_spiralis_22 3 3
Hymenolepis_microstoma_ 4 4
Echinococcus_multilocularis_ 4 4
Echinococcus_granulosus_ 4 4
Taenia_solium_   (Pork tapeworm)   4 4
Schistosoma_mansoni_ 5 5
Mnemiopsis_leidyi   (Sea walnut)   2 2
Acropora_digitifera_v1.0 2 2
Nematostella_vectensis_1.0   (Starlet sea anemone)   3 3
Hydra_vulgaris 1 1
Amphimedon_queenslandica 1 1
Trichoplax_adhaerens_ 1 1
Proterospongia_sp._ATCC_50818_ 3 3
Monosiga_brevicollis_ 3 3
Sphaeroforma_arctica_JP610_ 3 3
Capsaspora_owczarzaki_ATCC_30864_ 3 3
Magnaporthe_poae_ATCC_64411_22 1 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   1 1
Fusarium_oxysporum_f._sp._lycopersici_4286_ 2 2
Fusarium_verticillioides_7600_ 1 1
Trichoderma_virens_Gv29-8_ 1 1
Aspergillus_brasiliensis_v1.0 1 1
Aspergillus_nidulans_FGSC_A4_ 2 2
Aspergillus_sydowii_v1.0 1 1
Aspergillus_versicolor_v1.0 1 1
Aspergillus_carbonarius_ITEM_5010_ 1 1
Aspergillus_tubingensis_v1.0 1 1
Aspergillus_wentii_v1.0 1 1
Aspergillus_oryzae_RIB40_ 1 1
Aspergillus_niger_22 1 1
Aspergillus_niger_ATCC_1015_ 1 1
Aspergillus_flavus_NRRL3357_ 1 1
Aspergillus_clavatus_NRRL_1_ 1 1
Dictyostelium_discoideum 1 1
Dictyostelium_purpureum_ 1 1
Volvox_carteri_f._nagariensis_ 2 2
Volvox_carteri_v199 2 2
Chlamydomonas_reinhardtii_4.0 2 1
Ostreococcus_sp._RCC809_ 2 2
Ostreococcus_lucimarinus_CCE9901_ 1 1
Ostreococcus_tauri_ 1 1
Bathycoccus_prasinos_ 9 6
Micromonas_sp._RCC299_ 3 1
Ectocarpus_siliculosus 1 1
Albugo_laibachii_22 2 2
Pythium_iwayamai_DAOM_BR242034_22 2 2
Pythium_arrhenomanes_ATCC_12531_22 1 1
Pythium_ultimum_v1.7-2 1 1
Pythium_aphanidermatum_DAOM_BR444_22 2 2
Pythium_irregulare_DAOM_BR486_22 2 2
Pythium_vexans_DAOM_BR484_22 2 2
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1 1
Phytophthora_sojae_1.1 2 2
Phytophthora_infestans_T30-4_ 2 2
Phytophthora_capsici_ 1 1
Hyaloperonospora_arabidopsidis_22 1 1
Fragilariopsis_cylindrus 2 2
Emiliania_huxleyi_CCMP1516_ 3 1
Acaryochloris_marina_MBIC11017 2 2
Synechocystis_sp._PCC_6803 1 1
Synechococcus_sp._PCC_7502 1 1
Microcoleus_sp._PCC_7113 2 2
Gloeobacter_violaceus_PCC_7421 1 1
Rivularia_sp._PCC_7116 3 3
Calothrix_sp._PCC_7507 1 1
Anabaena_variabilis_ATCC_29413 2 2
Nostoc_sp._PCC_7107 1 1
Nostoc_punctiforme_PCC_73102 1 1
Nostoc_sp._PCC_7120 2 2
Nostoc_sp._PCC_7524 1 1
Conexibacter_woesei_DSM_14684 5 2
Ilumatobacter_coccineus 7 2
Thermobispora_bispora_DSM_43833 1 1
Catenulispora_acidiphila_DSM_44928 1 1
Stackebrandtia_nassauensis_DSM_44728 4 4
Frankia_alni_ACN14a 1 1
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 1 1
Streptosporangium_roseum_DSM_43021 3 3
Kitasatospora_setae_KM-6054 2 1
Streptomyces_coelicolor_A3(2) 2 2
Streptomyces_sp._PAMC26508 2 2
Streptomyces_flavogriseus_ATCC_33331 2 2
Streptomyces_sp._SirexAA-E 1 1
Streptomyces_griseus_subsp._griseus_NBRC_13350 1 1
Streptomyces_bingchenggensis_BCW-1 3 3
Streptomyces_violaceusniger_Tu_4113 2 2
Streptomyces_avermitilis_MA-4680 3 3
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1 1
Streptomyces_scabiei_87.22 2 2
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 6 6
Saccharopolyspora_erythraea_NRRL_2338 2 2
Kribbella_flavida_DSM_17836 1 1
Microlunatus_phosphovorus_NM-1 1 1
Verrucosispora_maris_AB-18-032 1 1
Actinoplanes_sp._N902-109 4 4
Actinoplanes_sp._SE50/110 2 2
Actinoplanes_missouriensis_431 2 2
Corynebacterium_resistens_DSM_45100 1 1
Corynebacterium_aurimucosum_ATCC_700975 1 1
Corynebacterium_efficiens_YS-314 3 2
Corynebacterium_jeikeium_K411 1 1
Corynebacterium_glutamicum_R 2 2
Kytococcus_sedentarius_DSM_20547 2 2
Beutenbergia_cavernae_DSM_12333 2 2
Isoptericola_variabilis_225 1 1
Xylanimonas_cellulosilytica_DSM_15894 1 1
Cellulomonas_fimi_ATCC_484 1 1
[Cellvibrio]_gilvus_ATCC_13127 2 2
Arthrobacter_phenanthrenivorans_Sphe3 1 1
Arthrobacter_chlorophenolicus_A6 1 1
Arthrobacter_aurescens_TC1 1 1
Kocuria_rhizophila_DC2201 1 1
Arthrobacter_sp._Rue61a 1 1
Arthrobacter_sp._FB24 1 1
Micrococcus_luteus_NCTC_2665 1 1
Bifidobacterium_longum_subsp._longum_JDM301 1 1
Bifidobacterium_bifidum_S17 1 1
Arcanobacterium_haemolyticum_DSM_20595 1 1
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 12 6
Anaerolinea_thermophila_UNI-1 1 1
Herpetosiphon_aurantiacus_DSM_785 2 2
Roseiflexus_sp._RS-1 3 3
Roseiflexus_castenholzii_DSM_13941 2 2
Chloroflexus_sp._MS-G 5 4
Chloroflexus_sp._Y-400-fl 6 3
Chloroflexus_aggregans_DSM_9485 8 4
Chloroflexus_aurantiacus_J-10-fl 6 3
Deinococcus_maricopensis_DSM_21211 2 2
Deinococcus_geothermalis_DSM_11300 1 1
Deinococcus_proteolyticus_MRP 1 1
Thermus_sp._CCB_US3_UF1 2 2
Thermus_thermophilus_HB27 1 1
Clostridium_clariflavum_DSM_19732 2 2
Eubacterium_siraeum 1 1
Clostridium_cellulolyticum_H10 1 1
Clostridium_thermocellum_ATCC_27405 3 2
Ethanoligenens_harbinense_YUAN-3 1 1
Ruminococcus_albus_7 2 2
Desulfosporosinus_orientis_DSM_765 1 1
Acetobacterium_woodii_DSM_1030 1 1
Clostridium_saccharolyticum_WM1 1 1
Roseburia_hominis_A2-183 1 1
Butyrivibrio_proteoclasticus_B316 1 1
Syntrophothermus_lipocalidus_DSM_12680 1 1
Alkaliphilus_metalliredigens_QYMF 1 1
Clostridium_sp._BNL1100 1 1
Clostridium_ljungdahlii_DSM_13528 1 1
Clostridium_kluyveri_DSM_555 1 1
Coprothermobacter_proteolyticus_DSM_5265 1 1
Halothermothrix_orenii_H_168 1 1
Exiguobacterium_sp._AT1b 1 1
Exiguobacterium_sibiricum_255-15 1 1
Kyrpidia_tusciae_DSM_2912 1 1
Brevibacillus_brevis_NBRC_100599 1 1
Paenibacillus_sp._JDR-2 2 2
Paenibacillus_mucilaginosus_3016 2 2
Geobacillus_thermoglucosidasius_C56-YS93 2 1
Lysinibacillus_sphaericus_C3-41 1 1
Bacillus_sp._JS 1 1
Bacillus_subtilis_subsp._subtilis_str._168 1 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1 1
Bacillus_clausii_KSM-K16 2 1
Bacillus_pumilus_SAFR-032 1 1
Candidatus_Cloacamonas_acidaminovorans 1 1
Gemmatimonas_aurantiaca_T-27 4 1
Melioribacter_roseus_P3M 5 1
Ignavibacterium_album_JCM_16511 6 1
Chlorobaculum_parvum_NCIB_8327 1 1
Chloroherpeton_thalassium_ATCC_35110 5 3
Prosthecochloris_aestuarii_DSM_271 1 1
Haliscomenobacter_hydrossis_DSM_1100 4 4
Saprospira_grandis_str._Lewin 5 3
Niastella_koreensis_GR20-10 2 2
Chitinophaga_pinensis_DSM_2588 1 1
Flexibacter_litoralis_DSM_6794 4 1
Belliella_baltica_DSM_15883 2 1
Cyclobacterium_marinum_DSM_745 5 2
Marivirga_tractuosa_DSM_4126 2 1
Dyadobacter_fermentans_DSM_18053 1 1
Cytophaga_hutchinsonii_ATCC_33406 1 1
Parabacteroides_distasonis_ATCC_8503 2 2
Tannerella_forsythia_ATCC_43037 2 2
Paludibacter_propionicigenes_WB4 1 1
Candidatus_Azobacteroides_pseudotrichonymphae_genomovar._CFP2 1 1
Bacteroides_sp._CF50 2 2
Prevotella_melaninogenica_ATCC_25845 1 1
Porphyromonas_asaccharolytica_DSM_20707 1 1
Porphyromonas_gingivalis_ATCC_33277 1 1
Bacteroides_salanitronis_DSM_18170 1 1
Bacteroides_helcogenes_P_36-108 1 1
Bacteroides_vulgatus_ATCC_8482 1 1
Bacteroides_thetaiotaomicron_VPI-5482 1 1
Bacteroides_fragilis_YCH46 1 1
Pedobacter_saltans_DSM_12145 2 1
Solitalea_canadensis_DSM_3403 2 1
Sphingobacterium_sp._21 1 1
Fluviicola_taffensis_DSM_16823 3 2
Owenweeksia_hongkongensis_DSM_17368 4 3
Zunongwangia_profunda_SM-A87 1 1
Lacinutrix_sp._5H-3-7-4 1 1
Maribacter_sp._HTCC2170 4 1
Robiginitalea_biformata_HTCC2501 1 1
Croceibacter_atlanticus_HTCC2559 2 2
Zobellia_galactanivorans 1 1
Muricauda_ruestringensis_DSM_13258 1 1
Cellulophaga_algicola_DSM_14237 1 1
Cellulophaga_lytica_DSM_7489 1 1
Flavobacteriaceae_bacterium_3519-10 1 1
Polaribacter_sp._MED152 2 2
Capnocytophaga_ochracea_DSM_7271 1 1
Flavobacterium_indicum_GPTSA100-9 1 1
Flavobacterium_psychrophilum_JIP02/86 1 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 3 3
Coraliomargarita_akajimensis_DSM_45221 6 2
Opitutus_terrae_PB90-1 1 1
Turneriella_parva_DSM_21527 8 4
Treponema_azotonutricium_ZAS-9 3 2
Spirochaeta_africana_DSM_8902 1 1
Petrotoga_mobilis_SJ95 1 1
Kosmotoga_olearia_TBF_19.5.1 1 1
Thermotoga_lettingae_TMO 1 1
Dictyoglomus_turgidum_DSM_6724 2 2
Dictyoglomus_thermophilum_H-6-12 3 2
Caldisericum_exile_AZM16c01 1 1
Candidatus_Solibacter_usitatus_Ellin6076 2 2
Granulicella_mallensis_MP5ACTX8 2 2
Terriglobus_saanensis_SP1PR4 1 1
Acidobacterium_capsulatum_ATCC_51196 1 1
Candidatus_Methylomirabilis_oxyfera 1 1
Desulfatibacillum_alkenivorans_AK-01 7 4
Desulfovibrio_piezophilus 1 1
Haliangium_ochraceum_DSM_14365 3 3
Sorangium_cellulosum_'So_ce_56' 9 9
Anaeromyxobacter_sp._Fw109-5 1 1
Anaeromyxobacter_dehalogenans_2CP-1 1 1
Stigmatella_aurantiaca_DW4/3-1 5 5
Corallococcus_coralloides_DSM_2259 7 7
Myxococcus_xanthus_DK_1622 7 7
Myxococcus_fulvus_HW-1 5 5
Rubrivivax_gelatinosus_IL144 1 1
Burkholderia_xenovorans_LB400 1 1
Nitrosospira_multiformis_ATCC_25196 1 1
Methylotenera_versatilis_301 1 1
Methylobacillus_flagellatus_KT 1 1
Sphingobium_japonicum_UT26S 1 1
Dinoroseobacter_shibae_DFL_12 1 1
Rhizobium_leguminosarum_bv._viciae_3841 1 1
Saccharophagus_degradans_2-40 1 1
Aliivibrio_salmonicida_LFI1238 1 1
Vibrio_fischeri_MJ11 1 1
Vibrio_splendidus_LGP32 1 1
Vibrio_anguillarum_775 1 1
Vibrio_furnissii_NCTC_11218 1 1
Vibrio_cholerae_O395 1 1
Psychromonas_ingrahamii_37 1 1
Shewanella_loihica_PV-4 2 2
Shewanella_sediminis_HAW-EB3 2 2
Shewanella_denitrificans_OS217 3 3
Shewanella_oneidensis_MR-1 2 2
Shewanella_baltica_OS185 1 1
Shewanella_woodyi_ATCC_51908 1 1
Shewanella_sp._MR-4 2 2
Shewanella_amazonensis_SB2B 1 1
Shewanella_violacea_DSS12 1 1
Shewanella_frigidimarina_NCIMB_400 2 2
Shewanella_putrefaciens_CN-32 1 1
Colwellia_psychrerythraea_34H 1 1
Pseudoalteromonas_sp._SM9913 1 1
Pseudoalteromonas_atlantica_T6c 1 1
Pseudoalteromonas_haloplanktis_TAC125 1 1
Marinobacter_hydrocarbonoclasticus_ATCC_49840 1 1
Hahella_chejuensis_KCTC_2396 1 1
Marinomonas_mediterranea_MMB-1 4 3
Halomonas_elongata_DSM_2581 1 1
Nitrosococcus_watsonii_C-113 1 1
Nitrosococcus_halophilus_Nc4 1 1
Nitrosococcus_oceani_ATCC_19707 1 1
Cenarchaeum_symbiosum_A 1 1
Candidatus_Nitrosopumilus_sp._AR2 1 1
Nitrosopumilus_maritimus_SCM1 1 1
Vulcanisaeta_moutnovskia_768-28 1 1
Vulcanisaeta_distributa_DSM_14429 1 1
Caldivirga_maquilingensis_IC-167 1 1
halophilic_archaeon_DL31 1 1
Methanosaeta_harundinacea_6Ac 7 7
Methanosaeta_thermophila_PT 4 4
Methanosaeta_concilii_GP6 9 9
Methanohalobium_evestigatum_Z-7303 2 2
Methanosarcina_mazei_Go1 1 1
Methanosphaerula_palustris_E1-9c 4 4
Methanoplanus_petrolearius_DSM_11571 1 1
Methanoculleus_bourgensis_MS2 1 1
Methanoculleus_marisnigri_JR1 1 1
Ferroglobus_placidus_DSM_10642 1 1
Archaeoglobus_profundus_DSM_5631 1 1
Thermococcus_sp._4557 1 1
Thermococcus_onnurineus_NA1 1 1
Thermococcus_kodakarensis_KOD1 1 1
Thermoplasmatales_archaeon_BRNA1 2 2
Halopiger_xanaduensis_SH-6 2 2
Halorubrum_lacusprofundi_ATCC_49239 1 1
Haloquadratum_walsbyi_DSM_16790 1 1
Halogeometricum_borinquense_DSM_11551 1 1
Haloferax_mediterranei_ATCC_33500 2 2
Haloferax_volcanii_DS2 1 1
Halomicrobium_mukohataei_DSM_12286 1 1
Haloarcula_hispanica_ATCC_33960 1 1
Haloarcula_marismortui_ATCC_43049 2 2
Halalkalicoccus_jeotgali_B3 1 1
Halobacterium_salinarum_R1 1 1
Halobacterium_sp._NRC-1 1 1
Aciduliprofundum_boonei_T469 1 1
Acholeplasma_laidlawii_PG-8A 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   9 9
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   2 2
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   2 2
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   7 6
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   17 17
Chamaesiphon_minutus_PCC_6605 1 1
Synechocystis_sp._PCC_6803_substr._PCC-P 1 1
Synechocystis_sp._PCC_6803_substr._PCC-N 1 1
Synechocystis_sp._PCC_6803_substr._GT-I 1 1
Synechocystis_sp._PCC_6803 1 1
Cyanothece_sp._ATCC_51142 1 1
Calothrix_parietina_Calothrix_sp._PCC_6303 1 1
Anabaena_cylindrica_PCC_7122 1 1
Frankia_sp._EuI1c 2 1
Frankia_sp._CcI3 1 1
Streptomyces_albus_J1074 1 1
Streptomyces_rapamycinicus_NRRL_5491 1 1
Streptomyces_davawensis_JCM_4913 3 3
Streptomyces_fulvissimus_DSM_40593 1 1
Streptomyces_venezuelae_ATCC_10712 1 1
Streptomyces_collinus_Tu_365 3 3
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 6 6
Saccharothrix_espanaensis_DSM_44229 2 2
Amycolatopsis_orientalis_HCCB10007 2 2
Propionibacterium_avidum_44067 1 1
Actinoplanes_friuliensis_DSM_7358 4 4
Corynebacterium_maris_DSM_45190 1 1
Corynebacterium_halotolerans_YIM_70093_=_DSM_44683 1 1
Corynebacterium_terpenotabidum_Y-11 1 1
Corynebacterium_callunae_DSM_20147 2 2
Corynebacterium_glutamicum_MB001 2 2
Corynebacterium_glutamicum_SCgG2 2 2
Corynebacterium_glutamicum_SCgG1 2 2
Corynebacterium_glutamicum_ATCC_13032 2 2
Corynebacterium_glutamicum_ATCC_13032 2 2
Corynebacterium_glutamicum_ATCC_13032 2 2
Clavibacter_michiganensis_subsp._sepedonicus 1 1
Bifidobacterium_longum_DJO10A 1 1
Bifidobacterium_longum_subsp._infantis_157F 1 1
Bifidobacterium_longum_subsp._longum_KACC_91563 1 1
Bifidobacterium_longum_subsp._longum_JCM_1217 1 1
Bifidobacterium_bifidum_PRL2010 1 1
Bifidobacterium_bifidum_BGN4 1 1
Chthonomonas_calidirosea_T49 1 1
Deinococcus_peraridilitoris_DSM_19664 1 1
Thermus_thermophilus_JL-18 2 2
Eubacterium_siraeum_V10Sc8a 1 1
Clostridium_thermocellum_DSM_1313 3 2
Ruminococcus_champanellensis_18P13 1 1
Desulfosporosinus_meridiei_DSM_13257 2 2
Clostridium_autoethanogenum_DSM_10061 1 1
Clostridium_kluyveri_NBRC_12016 1 1
Halobacteroides_halobius_DSM_5150 1 1
Exiguobacterium_antarcticum_B7 1 1
Thermobacillus_composti_KWC4 1 1
Paenibacillus_sp._Y412MC10 4 4
Paenibacillus_mucilaginosus_KNP414 2 2
Paenibacillus_mucilaginosus_K02 2 2
Bacillus_licheniformis_9945A 1 1
Bacillus_subtilis_PY79 1 1
Bacillus_subtilis_XF-1 1 1
Bacillus_subtilis_QB928 1 1
Bacillus_subtilis_BSn5 1 1
Bacillus_subtilis_subsp._subtilis_str._BAB-1 1 1
Bacillus_subtilis_subsp._subtilis_str._RO-NN-1 1 1
Bacillus_subtilis_subsp._subtilis_6051-HGW 1 1
Bacillus_subtilis_subsp._spizizenii_TU-B-10 1 1
Bacillus_subtilis_subsp._spizizenii_str._W23 1 1
Bacillus_subtilis_subsp._natto_BEST195 1 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1 1
Bacillus_infantis_NRRL_B-14911 4 2
Chlorobium_phaeobacteroides_BS1 2 2
Echinicola_vietnamensis_DSM_17526 3 2
Emticicia_oligotrophica_DSM_17448 2 1
Porphyromonas_gingivalis_TDC60 1 1
Porphyromonas_gingivalis_W83 1 1
Bacteroides_xylanisolvens_XB1A 1 1
Bacteroides_fragilis_638R 1 1
Bacteroides_fragilis_NCTC_9343 1 1
Nonlabens_dokdonensis_DSW-6 7 4
Psychroflexus_torquis_ATCC_700755 3 3
Fibrobacter_succinogenes_subsp._succinogenes_S85 3 3
Desulfocapsa_sulfexigens_DSM_10523 1 1
Sorangium_cellulosum_So0157-2 5 5
Anaeromyxobacter_sp._K 1 1
Anaeromyxobacter_dehalogenans_2CP-C 1 1
Myxococcus_stipitatus_DSM_14675 2 2
Rhizobium_etli_bv._mimosae_str._Mim1 1 1
Rhizobium_leguminosarum_bv._trifolii_WSM2304 1 1
Bradyrhizobium_japonicum_USDA_6 1 1
Vibrio_fischeri_ES114 1 1
Vibrio_sp._EJY3 1 1
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 1 1
Vibrio_anguillarum_Listonella_anguillarum_M3 1 1
Vibrio_nigripulchritudo_VibrioScope 4 3
Vibrio_cholerae_LMA3984-4 1 1
Vibrio_cholerae_M66-2 1 1
Vibrio_cholerae_O395 1 1
Vibrio_cholerae_IEC224 1 1
Vibrio_cholerae_O1_str._2010EL-1786 1 1
Vibrio_cholerae_MJ-1236 1 1
Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 1 1
Shewanella_sp._W3-18-1 1 1
Shewanella_sp._ANA-3 2 2
Shewanella_baltica_BA175 2 2
Shewanella_baltica_OS678 2 2
Shewanella_baltica_OS117 2 2
Shewanella_baltica_OS223 1 1
Shewanella_baltica_OS195 2 2
Shewanella_baltica_OS155 2 2
Shewanella_sp._MR-7 2 2
Shewanella_putrefaciens_200 1 1
Alcanivorax_dieselolei_B5 1 1
Candidatus_Nitrososphaera_gargensis_Ga9.2 1 1
Candidatus_Nitrosoarchaeum_koreensis_Candidatus_Nitrosopumilus_koreensis_AR1 1 1
Methanomethylovorans_hollandica_DSM_15978 3 3
Methanosarcina_mazei_Tuc01 1 1
Methanoregula_formicica_Methanoregula_formicicum_SMSP 1 1
Archaeoglobus_sulfaticallidus_PM70-1 2 2
Candidatus_Methanomethylophilus_alvus_Mx1201 2 2
Natrinema_pellirubrum_DSM_15624 1 1
Natronococcus_occultus_SP4 1 1
Haloquadratum_walsbyi_C23 1 1
Halorhabdus_tiamatea_SARL4B 2 2
Haloarcula_hispanica_N601 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   5 5
Pan_troglodytes_69_2.1.4   (Chimpanzee)   5 5
Gorilla_gorilla_69_3.1   (Western gorilla)   5 5
Pongo_abelii_69_2   (Sumatran orangutan)   5 5
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   4 4
Macaca_mulatta_69_1   (Rhesus monkey)   5 5
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   4 4
Otolemur_garnettii_69_3   (Small-eared galago)   5 5
Microcebus_murinus_69_1   (Gray mouse lemur)   3 3
Rattus_norvegicus_69_3.4   (Norway rat)   6 6
Mus_musculus_69_38   (House mouse)   5 5
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   5 5
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   5 5
Cavia_porcellus_69_3   (Domestic guinea pig)   6 6
Oryctolagus_cuniculus_69_2   (Rabbit)   3 3
Ochotona_princeps_69   (American pika)   4 4
Tupaia_belangeri_69   (Northern tree shrew)   5 4
Sus_scrofa_69_10.2   (Pig)   5 5
Bos_taurus_69_3.1   (Cattle)   5 5
Vicugna_pacos_69_1   (Alpaca)   2 2
Tursiops_truncatus_69_1   (Bottlenose dolphin)   5 5
Mustela_putorius_furo_69_1.0   (Domestic ferret)   5 5
Ailuropoda_melanoleuca_69_1   (Giant panda)   5 5
Canis_familiaris_69_3.1   (Dog)   5 5
Felis_catus_69   (Domestic cat)   5 4
Equus_caballus_69_2   (Horse)   5 5
Myotis_lucifugus_69_2.0   (Little brown bat)   4 4
Pteropus_vampyrus_69_1   (Large flying fox)   4 4
Sorex_araneus_69_1   (European shrew)   3 3
Erinaceus_europaeus_69   (Western European hedgehog)   3 3
Procavia_capensis_69_1   (Cape rock hyrax)   4 4
Loxodonta_africana_69_3   (African savanna elephant)   5 5
Echinops_telfairi_69   (Small Madagascar hedgehog)   3 3
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1 1
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   3 3
Macropus_eugenii_69_1.0   (Tammar wallaby)   6 5
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   5 5
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   5 5
Ornithorhynchus_anatinus_69_5   (Platypus)   4 4
Petromyzon_marinus_69_7.0   (Sea lamprey)   2 2
Meleagris_gallopavo_69_2   (Turkey)   3 3
Gallus_gallus_69_2   (Chicken)   3 3
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   4 4
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   6 6
Anolis_carolinensis_69_2.0   (Green anole)   6 6
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   4 4
Latimeria_chalumnae_69_1   (Coelacanth)   5 5
Gadus_morhua_69_1   (Atlantic cod)   5 5
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   5 5
Takifugu_rubripes_69_4   (Torafugu)   6 5
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   5 5
Oryzias_latipes_69_1   (Japanese medaka)   4 4
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   4 4
Oreochromis_niloticus_69_1.0   (Nile tilapia)   4 4
Danio_rerio_69_9   (Zebrafish)   4 4
Ciona_intestinalis_69   (Vase tunicate)   1 1
Drosophila_melanogaster_69_5   (Fruit fly)   2 2
Caenorhabditis_elegans_69_215   (Roundworm)   12 12

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   22 22
Homo_sapiens__(NCBI_version)   (Human)   11 11
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   5 5
Heliconius_numata__(Incomplete) 1 1
Loa_loa_v3.3_(Request)   (Eye worm)   6 6
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   5 5
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   4 4
Ricinus_communis__(Early_assembly)   (Castor bean)   1 1
Acholeplasma_laidlawii_PG-8A_(duplicate) 1 1
NCBI_plasmid_sequences_(Plasmids) 22 22
STRING_v9.0.5_(STRING) 469 435
PDB_chains_(SCOP_1.75)_(PDB) 3 3
NCBI_2017_08_genome 12831 11570
Uniprot_2018_03_genome 16752 13089
TargetDB__(Targets) 34 34
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 48 48
Protein_Data_Bank_(all_PDB_sequenc) 16 16

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