SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for Plakin repeat superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Plakin repeat domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   136 26
Pan_troglodytes_76_2.1.4   (Chimpanzee)   27 6
Gorilla_gorilla_76_3.1   (Western gorilla)   29 11
Pongo_abelii_76_2   (Sumatran orangutan)   10 4
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   5 2
Papio_anubis_76   (Olive baboon)   34 8
Macaca_mulatta_76_1   (Rhesus monkey)   49 12
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   45 14
Otolemur_garnettii_76_3   (Small-eared galago)   19 4
Microcebus_murinus_76_1   (Gray mouse lemur)   22 6
Rattus_norvegicus_76_5.0   (Norway rat)   36 10
Mus_musculus_76_38   (House mouse)   142 28
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   21 6
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   22 6
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   24 7
Cavia_porcellus_76_3   (Domestic guinea pig)   21 6
Oryctolagus_cuniculus_76_2   (Rabbit)   11 5
Ochotona_princeps_76   (American pika)   16 6
Tupaia_belangeri_76   (Northern tree shrew)   12 4
Sus_scrofa_76_10.2   (Pig)   15 5
Bos_taurus_76_3.1   (Cattle)   22 6
Ovis_aries_76_3.1   (Sheep)   31 8
Vicugna_pacos_76_1   (Alpaca)   5 3
Tursiops_truncatus_76_1   (Bottlenose dolphin)   21 6
Mustela_putorius_furo_76_1.0   (Domestic ferret)   20 5
Ailuropoda_melanoleuca_76_1   (Giant panda)   26 9
Canis_familiaris_76_3.1   (Dog)   33 10
Felis_catus_76_6.2   (Domestic cat)   16 5
Equus_caballus_76_2   (Horse)   60 13
Myotis_lucifugus_76_2.0   (Little brown bat)   22 6
Pteropus_vampyrus_76_1   (Large flying fox)   21 6
Sorex_araneus_76_1   (European shrew)   15 5
Erinaceus_europaeus_76   (Western European hedgehog)   19 6
Procavia_capensis_76_1   (Cape rock hyrax)   18 5
Loxodonta_africana_76_3   (African savanna elephant)   48 11
Echinops_telfairi_76   (Small Madagascar hedgehog)   16 5
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   29 7
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   9 3
Macropus_eugenii_76_1.0   (Tammar wallaby)   17 6
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   19 7
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   29 8
Ornithorhynchus_anatinus_76_5   (Platypus)   14 6
Saccoglossus_kowalevskii_v3.0 212 20
Petromyzon_marinus_76_7.0   (Sea lamprey)   14 6
Meleagris_gallopavo_76_2   (Turkey)   23 7
Gallus_gallus_76_4   (Chicken)   10 5
Anas_platyrhynchos_76_1.0   (Mallard)   21 6
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   20 6
Ficedula_albicollis_76_1.0   (Collared flycatcher)   23 7
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   9 4
Anolis_carolinensis_76_2.0   (Green anole)   33 7
Xenopus_laevis_   (African clawed frog)   7 5
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   20 7
Latimeria_chalumnae_76_1   (Coelacanth)   20 6
Lepisosteus_oculatus_76   (Spotted gar)   32 9
Gadus_morhua_76_1   (Atlantic cod)   36 9
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   31 9
Takifugu_rubripes_76_4   (Torafugu)   104 25
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   39 10
Oryzias_latipes_76_1   (Japanese medaka)   37 11
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   29 8
Poecilia_formosa_76   (Amazon molly)   40 10
Oreochromis_niloticus_76_1.0   (Nile tilapia)   43 11
Astyanax_mexicanus_76   (Mexican tetra)   40 10
Danio_rerio_76_9   (Zebrafish)   69 15
Oikopleura_dioica 13 7
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   19 12
Ciona_intestinalis_76   (Vase tunicate)   11 5
Adineta_vaga 21 7
Octopus_bimaculoides_280 125 7
Crassostrea_gigas_22   (Pacific oyster)   33 3
Lottia_gigantea_   (Owl limpet)   31 4
Helobdella_robusta_ 14 8
Capitella_sp._I_ 57 5
Danaus_plexippus_OGS1.0   (Monarch butterfly)   25 1
Heliconius_melpomene_   (Postman butterfly)   25 1
Bombyx_mori_   (Domestic silkworm)   16 2
Nasonia_vitripennis_   (Jewel wasp)   1 1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1 1
Linepithema_humile_v1.1   (Argentine ant)   22 2
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   20 1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   22 1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   21 1
Atta_cephalotes_v1.1 21 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   21 1
Lucilia_cuprina   (Australian sheep blowfly)   18 1
Drosophila_grimshawi_1.3 16 2
Drosophila_willistoni_1.3 16 1
Drosophila_pseudoobscura_2.13 16 1
Drosophila_persimilis_1.3 1 1
Drosophila_suzukii 15 1
Drosophila_yakuba_1.3 15 1
Drosophila_simulans_1.3 5 1
Drosophila_sechellia_1.3 16 1
Drosophila_melanogaster_76_5   (Fruit fly)   32 19
Drosophila_erecta_1.3 15 1
Drosophila_ananassae_1.3 14 1
Drosophila_virilis_1.2 9 1
Drosophila_mojavensis_1.3 15 1
Megaselia_scalaris_22 2 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   17 1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   15 1
Anopheles_gambiae_49_3j   (African malaria mosquito)   16 1
Tribolium_castaneum_3.0   (Red flour beetle)   20 1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   17 2
Acyrthosiphon_pisum_   (Pea aphid)   1 1
Tetranychus_urticae_   (Two-spotted spider mite)   3 2
Pristionchus_pacificus_ 8 1
Meloidogyne_incognita_   (Southern root-knot nematode)   21 2
Meloidogyne_hapla_ 16 4
Onchocerca_volvulus_22 10 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   9 1
Caenorhabditis_japonica_ 10 1
Caenorhabditis_remanei_ 11 1
Caenorhabditis_elegans_76_235   (Roundworm)   49 5
Caenorhabditis_briggsae_2 10 1
Trichinella_spiralis_22 10 1
Hymenolepis_microstoma_ 5 3
Echinococcus_multilocularis_ 4 2
Echinococcus_granulosus_ 4 2
Taenia_solium_   (Pork tapeworm)   3 2
Schistosoma_mansoni_ 10 8

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   23 8
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   25 12
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   16 1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   49 5
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 1 1
Xanthomonas_oryzae_pv._oryzae_KACC_10331 1 1

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   50 9
Pan_troglodytes_69_2.1.4   (Chimpanzee)   22 5
Gorilla_gorilla_69_3.1   (Western gorilla)   16 5
Pongo_abelii_69_2   (Sumatran orangutan)   10 4
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   10 3
Macaca_mulatta_69_1   (Rhesus monkey)   16 5
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   22 7
Otolemur_garnettii_69_3   (Small-eared galago)   19 4
Microcebus_murinus_69_1   (Gray mouse lemur)   22 6
Rattus_norvegicus_69_3.4   (Norway rat)   25 7
Mus_musculus_69_38   (House mouse)   22 6
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   21 6
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   22 6
Cavia_porcellus_69_3   (Domestic guinea pig)   21 6
Oryctolagus_cuniculus_69_2   (Rabbit)   17 7
Ochotona_princeps_69   (American pika)   16 6
Tupaia_belangeri_69   (Northern tree shrew)   12 4
Sus_scrofa_69_10.2   (Pig)   15 5
Bos_taurus_69_3.1   (Cattle)   22 6
Vicugna_pacos_69_1   (Alpaca)   5 3
Tursiops_truncatus_69_1   (Bottlenose dolphin)   21 6
Mustela_putorius_furo_69_1.0   (Domestic ferret)   20 5
Ailuropoda_melanoleuca_69_1   (Giant panda)   23 7
Canis_familiaris_69_3.1   (Dog)   21 6
Felis_catus_69   (Domestic cat)   12 5
Equus_caballus_69_2   (Horse)   20 6
Myotis_lucifugus_69_2.0   (Little brown bat)   22 6
Pteropus_vampyrus_69_1   (Large flying fox)   21 6
Sorex_araneus_69_1   (European shrew)   15 5
Erinaceus_europaeus_69   (Western European hedgehog)   19 6
Procavia_capensis_69_1   (Cape rock hyrax)   18 5
Loxodonta_africana_69_3   (African savanna elephant)   33 7
Echinops_telfairi_69   (Small Madagascar hedgehog)   16 5
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   13 4
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   9 3
Macropus_eugenii_69_1.0   (Tammar wallaby)   17 6
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   18 6
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   29 8
Ornithorhynchus_anatinus_69_5   (Platypus)   14 6
Petromyzon_marinus_69_7.0   (Sea lamprey)   13 5
Meleagris_gallopavo_69_2   (Turkey)   21 6
Gallus_gallus_69_2   (Chicken)   9 4
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   20 6
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   9 4
Anolis_carolinensis_69_2.0   (Green anole)   32 7
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   20 7
Latimeria_chalumnae_69_1   (Coelacanth)   20 6
Gadus_morhua_69_1   (Atlantic cod)   36 9
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   26 8
Takifugu_rubripes_69_4   (Torafugu)   33 9
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   38 9
Oryzias_latipes_69_1   (Japanese medaka)   37 11
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   29 8
Oreochromis_niloticus_69_1.0   (Nile tilapia)   34 9
Danio_rerio_69_9   (Zebrafish)   47 10
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   16 11
Ciona_intestinalis_69   (Vase tunicate)   11 5
Drosophila_melanogaster_69_5   (Fruit fly)   14 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   202 39
Homo_sapiens__(NCBI_version)   (Human)   89 15
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   22 6
Heliconius_numata__(Incomplete) 3 3
Loa_loa_v3.3_(Request)   (Eye worm)   9 1
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   11 3
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   11 2
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 26 26
STRING_v9.0.5_(STRING) 775 197
Uniprot_2018_03_genome 17727 3096
NCBI_2017_08_genome 49554 7301
TargetDB__(Targets) 53 31
Protein_Data_Bank_(all_PDB_sequenc) 13 12
PDB_chains_(SCOP_1.75)_(PDB) 2 2

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]