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Domain combinations for Subunit III of photosystem I reaction centre, PsaF superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Subunit III of photosystem I reaction centre, PsaF domain in that genome.

Complete genomes
Genome     Number   Proteins
Selaginella_moellendorffii_ 2 2
Pinus_taeda   (Loblolly pine)   2 2
Picea_abies   (Norway spruce)   1 1
Eucalyptus_grandis_v201   (Rose gum)   1 1
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1 1
Gossypium_raimondii_v221 2 2
Citrus_clementina_v165 3 3
Citrus_sinensis_v154   (Sweet orange)   2 2
Thellungiella_halophila_v173 1 1
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   3 3
Capsella_rubella_v183 1 1
Arabidopsis_lyrata_   (Lyrate rockcress)   1 1
Arabidopsis_thaliana_10   (Thale cress)   1 1
Carica_papaya_   (Papaya)   1 1
Medicago_truncatula_   (Barrel medic)   1 1
Phaseolus_vulgaris_v186   (French bean)   1 1
Glycine_max_v109   (Soybean)   1 1
Cucumis_sativus_v122   (Cucumber)   1 1
Fragaria_vesca_   (Wild strawberry)   1 1
Malus_domestica_v196   (Apple)   3 3
Prunus_persica_v139   (Peach)   1 1
Linum_usitatissimum_v200   (Flax)   2 2
Manihot_esculenta_v147   (Cassava)   2 2
Populus_trichocarpa_v156   (Black cottonwood)   2 2
Mimulus_guttatus_v140   (Spotted monkey flower)   1 1
Solanum_lycopersicum_v.2.3   (Tomato)   2 2
Solanum_tuberosum_   (Potato)   3 3
Actinidia_chinensis_Hongyang_ 1 1
Aquilegia_coerulea_v195 1 1
Triticum_urartu_22 1 1
Triticum_aestivum_22   (Bread wheat)   5 5
Aegilops_tauschii_22 1 1
Brachypodium_distachyon_   (Stiff brome)   1 1
Oryza_barthii_22   (African wild rice)   1 1
Oryza_meridionalis_22 1 1
Oryza_glumaepatula_22 1 1
Oryza_glaberrima   (African rice)   1 1
Oryza_punctata_22 1 1
Oryza_nivara_22 1 1
Oryza_brachyantha_22   (Malo sina)   1 1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   2 2
Oryza_sativa_v193   (Rice)   2 2
Panicum_virgatum_v202   (Switchgrass)   3 3
Setaria_italica_v164   (Foxtail millet)   3 3
Zea_mays_subsp._mays_   (Maize)   4 4
Zea_mays_v181   (Maize)   4 4
Sorghum_bicolor_   (Sorghum)   1 1
Musa_balbisiana   (Balbis banana)   3 3
Musa_acuminata_22   (Wild Malaysian banana)   1 1
Amborella_trichopoda_22 1 1
Physcomitrella_patens 4 4
Coccomyxa_subellipsoidea_sp._C-169_v2 1 1
Asterochloris_sp._Cgr/DA1pho_v1.0 1 1
Chlorella_variabilis_sp._NC64A_ 1 1
Chlorella_vulgaris_ 1 1
Volvox_carteri_f._nagariensis_ 1 1
Volvox_carteri_v199 1 1
Chlamydomonas_reinhardtii_4.0 1 1
Ostreococcus_sp._RCC809_ 1 1
Ostreococcus_lucimarinus_CCE9901_ 1 1
Ostreococcus_tauri_ 1 1
Bathycoccus_prasinos_ 1 1
Micromonas_sp._RCC299_ 1 1
Micromonas_pusilla_CCMP1545_v3.0 1 1
Cyanidioschyzon_merolae_strain_10D_22 1 1
Cyanidioschyzon_merolae 1 1
Bigelowiella_natans_CCMP2755_22 1 1
Aureococcus_anophagefferens_ 1 1
Thalassiosira_pseudonana_CCMP1335 1 1
Symbiodinium_minutum_clade_B1_v1.2 3 3
Leptolyngbya_sp._PCC_7376 1 1
Pseudanabaena_sp._PCC_7367 1 1
Acaryochloris_marina_MBIC11017 1 1
Synechocystis_sp._PCC_6803 1 1
Thermosynechococcus_sp._NK55 1 1
Thermosynechococcus_elongatus_BP-1 1 1
Synechococcus_sp._PCC_7502 1 1
Synechococcus_sp._PCC_6312 1 1
Synechococcus_sp._CC9311 1 1
Synechococcus_elongatus_PCC_7942 1 1
Prochlorococcus_marinus_str._MIT_9515 1 1
Microcoleus_sp._PCC_7113 1 1
Trichodesmium_erythraeum_IMS101 1 1
Geitlerinema_sp._PCC_7407 1 1
Cyanothece_sp._PCC_8802 1 1
Gloeocapsa_sp._PCC_7428 1 1
cyanobacterium_UCYN-A 1 1
Halothece_sp._PCC_7418 1 1
Microcystis_aeruginosa_NIES-843 1 1
Gloeobacter_violaceus_PCC_7421 1 1
Rivularia_sp._PCC_7116 1 1
Calothrix_sp._PCC_7507 2 2
Anabaena_variabilis_ATCC_29413 1 1
'Nostoc_azollae'_0708 1 1
Nostoc_sp._PCC_7107 1 1
Nostoc_punctiforme_PCC_73102 1 1
Nostoc_sp._PCC_7120 1 1
Nostoc_sp._PCC_7524 1 1
Anabaena_sp._90 1 1

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Strains
Genome     Number   Proteins
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1 1
Hordeum_vulgare_22   (Domesticated barley)   4 4
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1 1
Chroococcidiopsis_thermalis_PCC_7203 2 2
Chamaesiphon_minutus_PCC_6605 1 1
Synechocystis_sp._PCC_6803_substr._PCC-P 1 1
Synechocystis_sp._PCC_6803_substr._PCC-N 1 1
Synechocystis_sp._PCC_6803_substr._GT-I 1 1
Synechocystis_sp._PCC_6803 1 1
Cyanobium_gracile_PCC_6307 1 1
Dactylococcopsis_salina_PCC_8305 1 1
Synechococcus_sp._JA-2-3B'a(2-13) 1 1
Synechococcus_sp._JA-3-3Ab 1 1
Synechococcus_sp._CC9902 1 1
Synechococcus_sp._RCC307 1 1
Synechococcus_sp._CC9605 1 1
Synechococcus_sp._WH_8102 1 1
Synechococcus_sp._WH_7803 1 1
Synechococcus_sp._PCC_7002 1 1
Synechococcus_elongatus_PCC_6301 1 1
Prochlorococcus_marinus_str._NATL1A 1 1
Prochlorococcus_marinus_str._MIT_9301 1 1
Prochlorococcus_marinus_str._AS9601 1 1
Prochlorococcus_marinus_subsp._marinus_str._CCMP1375 1 1
Prochlorococcus_marinus_subsp._pastoris_str._CCMP1986 1 1
Prochlorococcus_marinus_str._MIT_9215 1 1
Prochlorococcus_marinus_str._MIT_9211 1 1
Prochlorococcus_marinus_str._MIT_9313 1 1
Prochlorococcus_marinus_str._MIT_9312 1 1
Prochlorococcus_marinus_str._MIT_9303 1 1
Prochlorococcus_marinus_str._NATL2A 1 1
Crinalium_epipsammum_PCC_9333 1 1
Oscillatoria_nigro-viridis_PCC_7112 1 1
Oscillatoria_acuminata_PCC_6304 1 1
Arthrospira_platensis_NIES-39 1 1
Cyanothece_sp._PCC_7822 1 1
Cyanothece_sp._PCC_7425 1 1
Cyanothece_sp._PCC_7424 1 1
Cyanothece_sp._ATCC_51142 1 1
Cyanothece_sp._PCC_8801 1 1
Cyanobacterium_aponinum_PCC_10605 1 1
Cyanobacterium_stanieri_PCC_7202 1 1
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 1 1
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 2 2
Stanieria_cyanosphaera_PCC_7437 1 1
Calothrix_parietina_Calothrix_sp._PCC_6303 1 1
Cylindrospermum_stagnale_PCC_7417 1 1
Anabaena_cylindrica_PCC_7122 1 1

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Longest transcript per gene
Genome     Number   Proteins
Arabidopsis_thaliana_10   (Thale cress)   1 1

Others
Genome     Number   Proteins
Picea_sitchensis__(Incomplete)   (Sitka spruce)   1 1
Malus_x_domestica_(Duplicate)   (Apple)   3 3
Ricinus_communis__(Early_assembly)   (Castor bean)   1 1
Nicotiana_benthamiana_0.4.4_(Early_draft) 5 4
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   2 2
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   2 2
Guillardia_theta_(nucleomorph) 1 1
NCBI_2017_08_genome 518 518
Uniprot_2018_03_genome 786 785
UniProt__viral_sequences_(Viral) 5 5
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 29 29
Protein_Data_Bank_(all_PDB_sequenc) 32 32
STRING_v9.0.5_(STRING) 54 54
PDB_chains_(SCOP_1.75)_(PDB) 1 1

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