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Domain combinations for Photosystem I subunits PsaA/PsaB superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Photosystem I subunits PsaA/PsaB domain in that genome.

Complete genomes
Genome     Number   Proteins
Linepithema_humile_v1.1   (Argentine ant)   1 1
Trichoplax_adhaerens_ 2 2
Daldinia_eschscholzii_EC12_v1.0 1 1
Selaginella_moellendorffii_ 2 2
Pinus_taeda   (Loblolly pine)   20 19
Picea_abies   (Norway spruce)   1 1
Theobroma_cacao_B97-61/B2_v1   (Cacao)   4 3
Gossypium_raimondii_v221 20 19
Citrus_clementina_v165 4 4
Thellungiella_halophila_v173 3 2
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   1 1
Arabidopsis_lyrata_   (Lyrate rockcress)   9 9
Arabidopsis_thaliana_10   (Thale cress)   2 2
Carica_papaya_   (Papaya)   3 3
Medicago_truncatula_   (Barrel medic)   16 14
Phaseolus_vulgaris_v186   (French bean)   1 1
Glycine_max_v109   (Soybean)   2 2
Cucumis_sativus_v122   (Cucumber)   3 3
Fragaria_vesca_   (Wild strawberry)   12 12
Malus_domestica_v196   (Apple)   10 10
Manihot_esculenta_v147   (Cassava)   4 3
Populus_trichocarpa_v156   (Black cottonwood)   9 9
Vitis_vinifera_   (Wine grape)   4 4
Mimulus_guttatus_v140   (Spotted monkey flower)   6 6
Solanum_lycopersicum_v.2.3   (Tomato)   42 42
Solanum_tuberosum_   (Potato)   4 4
Actinidia_chinensis_Hongyang_ 2 1
Aquilegia_coerulea_v195 1 1
Triticum_urartu_22 11 11
Triticum_aestivum_22   (Bread wheat)   13 13
Brachypodium_distachyon_   (Stiff brome)   3 3
Oryza_meridionalis_22 4 2
Oryza_glaberrima   (African rice)   15 15
Oryza_punctata_22 4 4
Oryza_brachyantha_22   (Malo sina)   5 5
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   8 8
Oryza_sativa_v193   (Rice)   8 8
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   7 3
Setaria_italica_v164   (Foxtail millet)   3 3
Sorghum_bicolor_   (Sorghum)   2 2
Musa_balbisiana   (Balbis banana)   1 1
Musa_acuminata_22   (Wild Malaysian banana)   3 3
Amborella_trichopoda_22 5 5
Asterochloris_sp._Cgr/DA1pho_v1.0 2 2
Volvox_carteri_f._nagariensis_ 2 2
Volvox_carteri_v199 2 2
Cyanidioschyzon_merolae_strain_10D_22 2 2
Cyanidioschyzon_merolae 2 2
Thalassiosira_pseudonana_CCMP1335 1 1
Emiliania_huxleyi_CCMP1516_ 1 1
Leptolyngbya_sp._PCC_7376 2 2
Pseudanabaena_sp._PCC_7367 2 2
Acaryochloris_marina_MBIC11017 2 2
Synechocystis_sp._PCC_6803 2 2
Thermosynechococcus_sp._NK55 2 2
Thermosynechococcus_elongatus_BP-1 2 2
Synechococcus_sp._PCC_7502 2 2
Synechococcus_sp._PCC_6312 2 2
Synechococcus_sp._CC9311 2 2
Synechococcus_elongatus_PCC_7942 2 2
Prochlorococcus_marinus_str._MIT_9515 2 2
Microcoleus_sp._PCC_7113 2 2
Trichodesmium_erythraeum_IMS101 2 2
Geitlerinema_sp._PCC_7407 2 2
Cyanothece_sp._PCC_8802 2 2
Gloeocapsa_sp._PCC_7428 3 3
cyanobacterium_UCYN-A 2 2
Halothece_sp._PCC_7418 2 2
Microcystis_aeruginosa_NIES-843 2 2
Gloeobacter_violaceus_PCC_7421 2 2
Rivularia_sp._PCC_7116 2 2
Calothrix_sp._PCC_7507 4 4
Anabaena_variabilis_ATCC_29413 3 3
'Nostoc_azollae'_0708 3 3
Nostoc_sp._PCC_7107 2 2
Nostoc_punctiforme_PCC_73102 3 3
Nostoc_sp._PCC_7120 3 3
Nostoc_sp._PCC_7524 3 3
Anabaena_sp._90 2 2
Heliobacterium_modesticaldum_Ice1 1 1
Streptococcus_uberis_0140J 1 1
Pelodictyon_phaeoclathratiforme_BU-1 1 1
Chlorobium_luteolum_DSM_273 1 1
Chlorobium_chlorochromatii_CaD3 1 1
Chlorobium_phaeobacteroides_DSM_266 1 1
Chlorobium_phaeovibrioides_DSM_265 1 1
Chlorobium_limicola_DSM_245 1 1
Chlorobaculum_parvum_NCIB_8327 1 1
Chlorobium_tepidum_TLS 1 1
Chloroherpeton_thalassium_ATCC_35110 1 1
Prosthecochloris_aestuarii_DSM_271 1 1
Candidatus_Chloracidobacterium_thermophilum_B 1 1

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Strains
Genome     Number   Proteins
Hordeum_vulgare_22   (Domesticated barley)   4 4
Chroococcidiopsis_thermalis_PCC_7203 6 6
Chamaesiphon_minutus_PCC_6605 2 2
Synechocystis_sp._PCC_6803_substr._PCC-P 2 2
Synechocystis_sp._PCC_6803_substr._PCC-N 2 2
Synechocystis_sp._PCC_6803_substr._GT-I 2 2
Synechocystis_sp._PCC_6803 2 2
Cyanobium_gracile_PCC_6307 2 2
Dactylococcopsis_salina_PCC_8305 2 2
Synechococcus_sp._JA-2-3B'a(2-13) 2 2
Synechococcus_sp._JA-3-3Ab 2 2
Synechococcus_sp._CC9902 2 2
Synechococcus_sp._RCC307 2 2
Synechococcus_sp._CC9605 2 2
Synechococcus_sp._WH_8102 2 2
Synechococcus_sp._WH_7803 2 2
Synechococcus_sp._PCC_7002 2 2
Synechococcus_elongatus_PCC_6301 2 2
Prochlorococcus_marinus_str._NATL1A 2 2
Prochlorococcus_marinus_str._MIT_9301 2 2
Prochlorococcus_marinus_str._AS9601 2 2
Prochlorococcus_marinus_subsp._marinus_str._CCMP1375 2 2
Prochlorococcus_marinus_subsp._pastoris_str._CCMP1986 2 2
Prochlorococcus_marinus_str._MIT_9215 2 2
Prochlorococcus_marinus_str._MIT_9211 2 2
Prochlorococcus_marinus_str._MIT_9313 2 2
Prochlorococcus_marinus_str._MIT_9312 2 2
Prochlorococcus_marinus_str._MIT_9303 2 2
Prochlorococcus_marinus_str._NATL2A 2 2
Crinalium_epipsammum_PCC_9333 2 2
Oscillatoria_nigro-viridis_PCC_7112 2 2
Oscillatoria_acuminata_PCC_6304 3 3
Arthrospira_platensis_NIES-39 2 2
Cyanothece_sp._PCC_7822 3 3
Cyanothece_sp._PCC_7425 3 3
Cyanothece_sp._PCC_7424 3 3
Cyanothece_sp._ATCC_51142 2 2
Cyanothece_sp._PCC_8801 2 2
Cyanobacterium_aponinum_PCC_10605 2 2
Cyanobacterium_stanieri_PCC_7202 2 2
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 2 2
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 4 4
Stanieria_cyanosphaera_PCC_7437 2 2
Calothrix_parietina_Calothrix_sp._PCC_6303 2 2
Cylindrospermum_stagnale_PCC_7417 2 2
Anabaena_cylindrica_PCC_7122 2 2
Chlorobium_phaeobacteroides_BS1 1 1

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Longest transcript per gene
Genome     Number   Proteins
Arabidopsis_thaliana_10   (Thale cress)   2 2

Others
Genome     Number   Proteins
Picea_sitchensis__(Incomplete)   (Sitka spruce)   1 1
Lotus_japonicus__(Early_assembly) 44 44
Malus_x_domestica_(Duplicate)   (Apple)   10 10
Ricinus_communis__(Early_assembly)   (Castor bean)   11 11
Nicotiana_benthamiana_0.4.4_(Early_draft) 35 28
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   41 41
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   42 42
Guillardia_theta_(nucleomorph) 2 2
PDB_chains_(SCOP_1.75)_(PDB) 2 2
UniProt__viral_sequences_(Viral) 11 11
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 80 80
Protein_Data_Bank_(all_PDB_sequenc) 132 61
STRING_v9.0.5_(STRING) 152 149
NCBI_2017_08_genome 1001 996
Uniprot_2018_03_genome 14722 14539

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