SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain combinations for BEACH domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a BEACH domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   24 24
Pan_troglodytes_76_2.1.4   (Chimpanzee)   8 8
Gorilla_gorilla_76_3.1   (Western gorilla)   11 11
Pongo_abelii_76_2   (Sumatran orangutan)   8 8
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   11 11
Papio_anubis_76   (Olive baboon)   9 9
Macaca_mulatta_76_1   (Rhesus monkey)   17 17
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   23 23
Otolemur_garnettii_76_3   (Small-eared galago)   8 8
Microcebus_murinus_76_1   (Gray mouse lemur)   11 8
Rattus_norvegicus_76_5.0   (Norway rat)   13 13
Mus_musculus_76_38   (House mouse)   17 17
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   10 8
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   7 7
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   8 8
Cavia_porcellus_76_3   (Domestic guinea pig)   8 8
Oryctolagus_cuniculus_76_2   (Rabbit)   9 9
Ochotona_princeps_76   (American pika)   8 8
Tupaia_belangeri_76   (Northern tree shrew)   7 7
Sus_scrofa_76_10.2   (Pig)   12 12
Bos_taurus_76_3.1   (Cattle)   9 9
Ovis_aries_76_3.1   (Sheep)   11 11
Vicugna_pacos_76_1   (Alpaca)   7 7
Tursiops_truncatus_76_1   (Bottlenose dolphin)   9 8
Mustela_putorius_furo_76_1.0   (Domestic ferret)   8 8
Ailuropoda_melanoleuca_76_1   (Giant panda)   12 12
Canis_familiaris_76_3.1   (Dog)   13 13
Felis_catus_76_6.2   (Domestic cat)   9 9
Equus_caballus_76_2   (Horse)   12 12
Myotis_lucifugus_76_2.0   (Little brown bat)   9 9
Pteropus_vampyrus_76_1   (Large flying fox)   8 8
Sorex_araneus_76_1   (European shrew)   12 8
Erinaceus_europaeus_76   (Western European hedgehog)   8 8
Procavia_capensis_76_1   (Cape rock hyrax)   8 8
Loxodonta_africana_76_3   (African savanna elephant)   12 12
Echinops_telfairi_76   (Small Madagascar hedgehog)   8 8
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   15 15
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   7 7
Macropus_eugenii_76_1.0   (Tammar wallaby)   11 8
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   11 11
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   9 9
Ornithorhynchus_anatinus_76_5   (Platypus)   8 8
Saccoglossus_kowalevskii_v3.0 5 5
Petromyzon_marinus_76_7.0   (Sea lamprey)   8 8
Meleagris_gallopavo_76_2   (Turkey)   8 8
Gallus_gallus_76_4   (Chicken)   9 9
Anas_platyrhynchos_76_1.0   (Mallard)   11 11
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   8 8
Ficedula_albicollis_76_1.0   (Collared flycatcher)   9 9
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   9 9
Anolis_carolinensis_76_2.0   (Green anole)   7 7
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   9 9
Latimeria_chalumnae_76_1   (Coelacanth)   9 9
Lepisosteus_oculatus_76   (Spotted gar)   14 14
Gadus_morhua_76_1   (Atlantic cod)   11 11
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   15 15
Takifugu_rubripes_76_4   (Torafugu)   39 39
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   13 13
Oryzias_latipes_76_1   (Japanese medaka)   11 11
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   10 10
Poecilia_formosa_76   (Amazon molly)   10 10
Oreochromis_niloticus_76_1.0   (Nile tilapia)   15 15
Astyanax_mexicanus_76   (Mexican tetra)   10 10
Danio_rerio_76_9   (Zebrafish)   16 16
Oikopleura_dioica 6 6
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   15 15
Ciona_intestinalis_76   (Vase tunicate)   4 4
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   11 11
Adineta_vaga 17 17
Octopus_bimaculoides_280 10 10
Crassostrea_gigas_22   (Pacific oyster)   7 6
Lottia_gigantea_   (Owl limpet)   9 9
Helobdella_robusta_ 5 5
Capitella_sp._I_ 6 6
Danaus_plexippus_OGS1.0   (Monarch butterfly)   7 5
Heliconius_melpomene_   (Postman butterfly)   6 6
Bombyx_mori_   (Domestic silkworm)   5 5
Nasonia_vitripennis_   (Jewel wasp)   4 4
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   6 6
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   5 5
Linepithema_humile_v1.1   (Argentine ant)   5 5
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   6 5
Solenopsis_invicta_v.2.2.3   (Red fire ant)   7 7
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   5 5
Atta_cephalotes_v1.1 5 5
Camponotus_floridanus_v3.3   (Florida carpenter ant)   5 5
Lucilia_cuprina   (Australian sheep blowfly)   3 3
Drosophila_grimshawi_1.3 5 5
Drosophila_willistoni_1.3 5 5
Drosophila_pseudoobscura_2.13 5 5
Drosophila_persimilis_1.3 5 5
Drosophila_suzukii 4 4
Drosophila_yakuba_1.3 5 5
Drosophila_simulans_1.3 5 5
Drosophila_sechellia_1.3 6 6
Drosophila_melanogaster_76_5   (Fruit fly)   12 12
Drosophila_erecta_1.3 5 5
Drosophila_ananassae_1.3 5 5
Drosophila_virilis_1.2 5 5
Drosophila_mojavensis_1.3 6 6
Megaselia_scalaris_22 2 2
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   7 7
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   5 5
Anopheles_darlingi_22   (American malaria mosquito)   4 4
Anopheles_gambiae_49_3j   (African malaria mosquito)   6 6
Tribolium_castaneum_3.0   (Red flour beetle)   4 4
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   5 5
Acyrthosiphon_pisum_   (Pea aphid)   5 5
Rhodnius_prolixus_22 4 4
Daphnia_pulex_   (Common water flea)   7 7
Strigamia_maritima_22 6 6
Sarcoptes_scabiei 4 4
Tetranychus_urticae_   (Two-spotted spider mite)   3 3
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   5 5
Pristionchus_pacificus_ 5 4
Meloidogyne_hapla_ 1 1
Onchocerca_volvulus_22 3 3
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   3 3
Caenorhabditis_japonica_ 3 3
Caenorhabditis_brenneri_ 2 2
Caenorhabditis_remanei_ 5 5
Caenorhabditis_elegans_76_235   (Roundworm)   12 12
Caenorhabditis_briggsae_2 4 4
Trichinella_spiralis_22 8 8
Hymenolepis_microstoma_ 9 9
Echinococcus_multilocularis_ 5 5
Echinococcus_granulosus_ 5 5
Taenia_solium_   (Pork tapeworm)   5 5
Schistosoma_mansoni_ 6 6
Mnemiopsis_leidyi   (Sea walnut)   7 6
Thelohanellus_kitauei 1 1
Acropora_digitifera_v1.0 7 7
Nematostella_vectensis_1.0   (Starlet sea anemone)   9 9
Hydra_vulgaris 6 6
Amphimedon_queenslandica 13 13
Trichoplax_adhaerens_ 6 6
Proterospongia_sp._ATCC_50818_ 5 5
Monosiga_brevicollis_ 5 5
Sphaeroforma_arctica_JP610_ 8 8
Capsaspora_owczarzaki_ATCC_30864_ 6 6
Conidiobolus_coronatus_NRRL28638_v1.0 1 1
Mortierella_verticillata_NRRL_6337_ 2 2
Phycomyces_blakesleeanus_ 3 3
Rhizopus_oryzae_RA_99-880_ 2 2
Mucor_circinelloides_ 2 2
Rhizomucor_miehei_CAU432_ 3 2
Malassezia_globosa_CBS_7966_ 2 2
Sporisorium_reilianum_22 1 1
Ustilago_maydis_ 1 1
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 1 1
Melampsora_laricis-populina_ 1 1
Rhodotorula_graminis_WP1_v1.0 1 1
Microbotryum_violaceum_22 1 1
Sphaerobolus_stellatus_v1.0 1 1
Piloderma_croceum_F_1598_v1.0 1 1
Serpula_lacrymans_var._lacrymans_S7.9_ 1 1
Coniophora_puteana 1 1
Hydnomerulius_pinastri_v2.0 1 1
Paxillus_rubicundulus_Ve08.2h10_v1.0 1 1
Pisolithus_microcarpus_441_v1.0 1 1
Pisolithus_tinctorius_Marx_270_v1.0 2 2
Scleroderma_citrinum_Foug_A_v1.0 1 1
Coprinopsis_cinerea_okayama7_130_v3 1 1
Pleurotus_ostreatus_   (Oyster mushroom)   1 1
Amanita_thiersii_Skay4041_v1.0 1 1
Amanita_muscaria_Koide_v1.0   (Fly agaric)   1 1
Galerina_marginata_v1.0 1 1
Hebeloma_cylindrosporum_h7_v2.0 1 1
Laccaria_bicolor_S238N-H82_ 1 1
Agaricus_bisporus_var._bisporus_ 1 1
Stereum_hirsutum_FP-91666_SS1__v1.0 1 1
Heterobasidion_annosum_ 1 1
Gloeophyllum_trabeumv1.0 1 1
Punctularia_strigosozonata_v1.0 1 1
Sebacina_vermifera_MAFF_305830_v1.0 1 1
Fomitiporia_mediterranea_v1.0 1 1
Tulasnella_calospora_AL13/4D_v1.0 1 1
Postia_placenta_ 1 1
Wolfiporia_cocos_MD-104_SS10__v1.0 1 1
Fomitopsis_pinicolav1.0 1 1
Fomitopsis_pinicola_FP-58527_SS1_v3.0 1 1
Phanerochaete_chrysosporium_RP-78_2.1 1 1
Dichomitus_squalens 1 1
Trametes_versicolor_v1.0 1 1
Tremella_mesenterica_   (Witches' butter)   1 1
Daldinia_eschscholzii_EC12_v1.0 1 1
Apiospora_montagnei_NRRL_25634_v1.0 1 1
Magnaporthe_poae_ATCC_64411_22 1 1
Magnaporthe_grisea_70-15_ 1 1
Podospora_anserina_ 1 1
Sporotrichum_thermophile_ATCC_42464_ 1 1
Thielavia_terrestris_NRRL_8126_ 1 1
Chaetomium_globosum_CBS_148.51_ 1 1
Neurospora_tetrasperma_ 1 1
Neurospora_discreta_FGSC_8579_ 1 1
Neurospora_crassa_OR74A_ 1 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   1 1
Verticillium_albo-atrum_VaMs.102_ 1 1
Verticillium_dahliae_VdLs.17_ 1 1
Acremonium_alcalophilumv_1.0 1 1
Glomerella_graminicola_22 1 1
Fusarium_graminearum_ 1 1
Nectria_haematococca_mpVI_ 1 1
Fusarium_oxysporum_f._sp._lycopersici_4286_ 1 1
Fusarium_verticillioides_7600_ 1 1
Trichoderma_asperellum_CBS_433.97_v1.0 1 1
Trichoderma_atroviride_ 1 1
Trichoderma_citrinoviride_v1.0 1 1
Trichoderma_reesei_1.2 1 1
Trichoderma_virens_Gv29-8_ 1 1
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1 1
Trichoderma_harzianum_CBS_226.95_v1.0 1 1
Amorphotheca_resinae_v1.0   (Creosote fungus)   1 1
Botrytis_cinerea_B05.10_ 1 1
Sclerotinia_sclerotiorum_ 1 1
Blumeria_graminis_22 1 1
Didymella_exigua_CBS_183.55_v1.0 1 1
Leptosphaeria_maculans_22 1 1
Setosphaeria_turcica_v1.0 1 1
Cochliobolus_miyabeanus_ATCC_44560_v1.0 1 1
Cochliobolus_victoriae_FI3_v1.0 1 1
Cochliobolus_carbonum_26-R-13_v1.0 1 1
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   1 1
Alternaria_brassicicola_ 1 1
Cochliobolus_lunatus_m118_v2.0 1 1
Pyrenophora_teres_f._teres_22 1 1
Pyrenophora_tritici-repentis_ 1 1
Stagonospora_nodorum_ 1 1
Mycosphaerella_graminicola_IPO323_ 1 1
Zasmidium_cellare_ATCC_36951_v1.0 1 1
Dothistroma_septosporum 1 1
Septoria_musiva_v1.0 1 1
Mycosphaerella_fijiensis_CIRAD86_ 1 1
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1 1
Paracoccidioides_brasiliensis_Pb18_ 1 1
Coccidioides_posadasii_RMSCC_3488_ 1 1
Coccidioides_immitis_RS_ 1 1
Ajellomyces_dermatitidis_SLH14081_ 1 1
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1 1
Microsporum_canis_CBS_113480_ 1 1
Trichophyton_equinum_CBS_127.97_ 1 1
Trichophyton_verrucosum_HKI_0517_ 1 1
Arthroderma_benhamiae_CBS_112371_ 1 1
Trichophyton_tonsurans_CBS_112818_ 1 1
Trichophyton_rubrum_CBS_118892_ 1 1
Uncinocarpus_reesii_1704_ 1 1
Aspergillus_zonatus_v1.0 1 1
Penicillium_chrysogenum_Wisconsin_54-1255_ 1 1
Penicillium_chrysogenum_v1.0 1 1
Aspergillus_acidus_v1.0 1 1
Aspergillus_fumigatus_Af293 1 1
Aspergillus_brasiliensis_v1.0 1 1
Aspergillus_nidulans_FGSC_A4_ 1 1
Aspergillus_sydowii_v1.0 1 1
Aspergillus_versicolor_v1.0 1 1
Aspergillus_glaucus 1 1
Aspergillus_carbonarius_ITEM_5010_ 1 1
Neosartorya_fischeri_NRRL_181_ 1 1
Aspergillus_terreus_NIH2624_ 1 1
Aspergillus_tubingensis_v1.0 1 1
Aspergillus_wentii_v1.0 1 1
Aspergillus_oryzae_RIB40_ 1 1
Aspergillus_niger_22 1 1
Aspergillus_flavus_NRRL3357_ 1 1
Aspergillus_clavatus_NRRL_1_ 1 1
Penicillium_marneffei_ATCC_18224_ 1 1
Tuber_melanosporum_Mel28_22 1 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   1 1
Hansenula_polymorpha_v2.0 1 1
Dekkera_bruxellensis_CBS_2499_v2.0 1 1
Pichia_membranifaciensv1.0 1 1
Candida_tanzawaensis_NRRL_Y-17324__v1.0 1 1
Candida_dubliniensis_CD36_ 1 1
Candida_tropicalis_MYA-3404_ 1 1
Candida_parapsilosis_ 1 1
Candida_albicans_SC5314 1 1
Lodderomyces_elongisporus_NRRL_YB-4239_ 1 1
Babjeviella_inositovora_NRRL_Y-12698_v1.0 1 1
Pichia_stipitis_CBS_6054_ 1 1
Candida_guilliermondii_ATCC_6260_ 1 1
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 1 1
Debaromyces_hansenii 1 1
Wickerhamomyces_anomalus 1 1
Pichia_pastoris_GS115_ 1 1
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1 1
Yarrowia_lipolytica_CLIB122 1 1
Candida_lusitaniae_ATCC_42720_ 1 1
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 1 1
Vanderwaltozyma_polyspora_DSM_70294_ 1 1
Candida_glabrata_CBS138 1 1
Kluyveromyces_thermotolerans_CBS_6340 1 1
Lachancea_kluyveri_ 1 1
Kluyveromyces_waltii 1 1
Ashbya_gossypii_ATCC_10895_ 1 1
Zygosaccharomyces_rouxii_ 1 1
Saccharomyces_mikatae_MIT 1 1
Saccharomyces_paradoxus_MIT 1 1
Saccharomyces_cerevisiae_76   (Baker's yeast)   1 1
Saccharomyces_bayanus_MIT 1 1
Kluyveromyces_lactis 1 1
Schizosaccharomyces_cryophilus_OY26_22 1 1
Schizosaccharomyces_octosporus_yFS286_ 1 1
Schizosaccharomyces_japonicus_yFS275_ 1 1
Schizosaccharomyces_pombe   (Fission yeast)   1 1
Catenaria_anguillulae_PL171_v1.0 1 1
Allomyces_macrogynus_ATCC_38327_ 2 2
Spizellomyces_punctatus_DAOM_BR117_ 1 1
Dictyostelium_discoideum 7 7
Dictyostelium_purpureum_ 7 7
Entamoeba_dispar_1.2 11 11
Entamoeba_invadens_1.2 11 10
Entamoeba_histolytica_1 11 11
Selaginella_moellendorffii_ 11 11
Pinus_taeda   (Loblolly pine)   5 5
Picea_abies   (Norway spruce)   3 3
Eucalyptus_grandis_v201   (Rose gum)   6 6
Theobroma_cacao_B97-61/B2_v1   (Cacao)   4 4
Gossypium_raimondii_v221 28 28
Citrus_clementina_v165 5 5
Citrus_sinensis_v154   (Sweet orange)   12 12
Thellungiella_halophila_v173 6 6
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   7 7
Capsella_rubella_v183 7 7
Arabidopsis_lyrata_   (Lyrate rockcress)   6 6
Arabidopsis_thaliana_10   (Thale cress)   7 7
Carica_papaya_   (Papaya)   6 6
Medicago_truncatula_   (Barrel medic)   5 5
Phaseolus_vulgaris_v186   (French bean)   8 8
Glycine_max_v109   (Soybean)   6 6
Cucumis_sativus_v122   (Cucumber)   7 7
Fragaria_vesca_   (Wild strawberry)   5 4
Malus_domestica_v196   (Apple)   14 13
Prunus_persica_v139   (Peach)   4 4
Linum_usitatissimum_v200   (Flax)   6 6
Manihot_esculenta_v147   (Cassava)   4 4
Populus_trichocarpa_v156   (Black cottonwood)   9 9
Vitis_vinifera_   (Wine grape)   6 6
Mimulus_guttatus_v140   (Spotted monkey flower)   5 5
Solanum_lycopersicum_v.2.3   (Tomato)   4 4
Actinidia_chinensis_Hongyang_ 3 3
Aquilegia_coerulea_v195 12 12
Triticum_urartu_22 4 4
Triticum_aestivum_22   (Bread wheat)   19 19
Aegilops_tauschii_22 6 6
Brachypodium_distachyon_   (Stiff brome)   8 8
Oryza_barthii_22   (African wild rice)   13 12
Oryza_meridionalis_22 15 15
Oryza_glumaepatula_22 18 18
Oryza_glaberrima   (African rice)   4 4
Oryza_punctata_22 12 12
Oryza_nivara_22 14 14
Oryza_brachyantha_22   (Malo sina)   6 6
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   6 6
Oryza_sativa_v193   (Rice)   6 6
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   9 8
Panicum_virgatum_v202   (Switchgrass)   9 9
Setaria_italica_v164   (Foxtail millet)   6 6
Zea_mays_subsp._mays_   (Maize)   9 9
Zea_mays_v181   (Maize)   9 9
Sorghum_bicolor_   (Sorghum)   5 5
Musa_balbisiana   (Balbis banana)   7 6
Musa_acuminata_22   (Wild Malaysian banana)   6 6
Amborella_trichopoda_22 4 4
Physcomitrella_patens 8 8
Coccomyxa_subellipsoidea_sp._C-169_v2 4 4
Asterochloris_sp._Cgr/DA1pho_v1.0 4 4
Chlorella_variabilis_sp._NC64A_ 3 3
Chlorella_vulgaris_ 4 4
Volvox_carteri_f._nagariensis_ 2 2
Volvox_carteri_v199 1 1
Chlamydomonas_reinhardtii_4.0 3 2
Ostreococcus_sp._RCC809_ 3 3
Ostreococcus_lucimarinus_CCE9901_ 3 3
Ostreococcus_tauri_ 3 3
Bathycoccus_prasinos_ 4 4
Micromonas_sp._RCC299_ 3 3
Micromonas_pusilla_CCMP1545_v3.0 4 4
Porphyridium_purpureum_02_2012 2 2
Thecamonas_trahens_ATCC_50062_ 6 6
Bigelowiella_natans_CCMP2755_22 7 6
Giardia_lamblia_2.3 2 2
Cyanophora_paradoxa_ 1 1
Leishmania_mexicana_2.4 4 4
Leishmania_major_strain_Friedlin_ 4 4
Leishmania_infantum_JPCM5_2.4 4 4
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 4 4
Trypanosoma_vivax_ 4 4
Trypanosoma_cruzi_strain_CL_Brener 3 3
Trypanosoma_congolense_2.4 6 6
Trypanosoma_brucei_gambiense_v4.1 4 4
Trypanosoma_brucei_TREU927_v4.1 4 4
Ectocarpus_siliculosus 6 6
Aureococcus_anophagefferens_ 5 5
Albugo_laibachii_22 6 6
Pythium_iwayamai_DAOM_BR242034_22 5 5
Pythium_arrhenomanes_ATCC_12531_22 7 7
Pythium_ultimum_v1.7-2 7 7
Pythium_aphanidermatum_DAOM_BR444_22 8 8
Pythium_irregulare_DAOM_BR486_22 8 8
Pythium_vexans_DAOM_BR484_22 9 9
Phytophthora_ramorum_1.1   (Sudden oak death agent)   10 10
Phytophthora_sojae_1.1 8 8
Phytophthora_infestans_T30-4_ 8 8
Phytophthora_capsici_ 7 7
Hyaloperonospora_arabidopsidis_22 4 4
Phaeodactylum_tricornutumCCAP_1055/1 4 4
Fragilariopsis_cylindrus 8 8
Thalassiosira_pseudonana_CCMP1335 5 5
Paramecium_tetraurelia_ 22 22
Tetrahymena_thermophila_SB210_1_ 6 6
Ichthyophthirius_multifiliis_strain_G5_ 8 8
Cryptosporidium_hominis 1 1
Cryptosporidium_muris 1 1
Cryptosporidium_parvum_Iowa_II 1 1
Neospora_caninum 2 1
Toxoplasma_gondii_VEG 2 1
Toxoplasma_gondii_ME49 2 1
Toxoplasma_gondii_GT1 2 1
Babesia_bovis_T2Bo_ 2 2
Theileria_parva__ 1 1
Theileria_annulata 1 1
Plasmodium_falciparum_3D7_ 1 1
Plasmodium_vivax_SaI-1_7.0 1 1
Plasmodium_knowlesi_strain_H_ 1 1
Plasmodium_yoelii_ssp._yoelii_1_ 1 1
Plasmodium_chabaudi_ 1 1
Plasmodium_berghei_ANKA_ 1 1
Symbiodinium_minutum_clade_B1_v1.2 1 1
Naegleria_gruberi_ 6 6
Trichomonas_vaginalis_ 109 107
Guillardia_theta_CCMP2712_v1.0_ 7 7
Emiliania_huxleyi_CCMP1516_ 5 5

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   11 11
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   9 9
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   7 7
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   5 5
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   4 4
Cryptococcus_neoformans_var._grubii_H99_ 1 1
Cryptococcus_neoformans_B-3501A_ 1 1
Cryptococcus_neoformans_JEC21_ 1 1
Paracoccidioides_brasiliensis_Pb01_ 1 1
Paracoccidioides_brasiliensis_Pb03_ 1 1
Coccidioides_posadasii_str._Silveira_ 1 1
Coccidioides_immitis_RMSCC_3703_ 1 1
Coccidioides_immitis_RMSCC_2394_ 1 1
Coccidioides_immitis_H538.4_ 1 1
Ajellomyces_dermatitidis_ER-3_ 1 1
Histoplasma_capsulatum_H143 1 1
Histoplasma_capsulatum_H88 1 1
Histoplasma_capsulatum_G186AR 1 1
Aspergillus_fumigatus_A1163_ 1 1
Candida_albicans_WO-1_ 1 1
Saccharomyces_cerevisiae_UC5 1 1
Saccharomyces_cerevisiae_PW5 1 1
Saccharomyces_cerevisiae_T7 1 1
Saccharomyces_cerevisiae_FostersO 1 1
Saccharomyces_cerevisiae_LalvinQA23 1 1
Saccharomyces_cerevisiae_Sigma1278b 1 1
Saccharomyces_cerevisiae_W303 1 1
Saccharomyces_cerevisiae_JAY291 1 1
Saccharomyces_cerevisiae_YJM789_ 1 1
Saccharomyces_cerevisiae_YJM789 1 1
Saccharomyces_cerevisiae_RM11-1a 1 1
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   1 1
Schizosaccharomyces_pombe_972h-_ 1 1
Batrachochytrium_dendrobatidis_JEL423_ 2 2
Batrachochytrium_dendrobatidis_JAM81_ 3 3
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   4 4
Hordeum_vulgare_22   (Domesticated barley)   36 36
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   6 6
Trypanosoma_brucei_Lister_427_v4.1 4 4
Neospora_caninum_Nc-Liverpool_6.2 2 1
Plasmodium_falciparum_HB3_ 1 1
Plasmodium_falciparum_Dd2_ 1 1
Prochlorococcus_marinus_str._MIT_9211 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   10 10
Pan_troglodytes_69_2.1.4   (Chimpanzee)   8 8
Gorilla_gorilla_69_3.1   (Western gorilla)   9 9
Pongo_abelii_69_2   (Sumatran orangutan)   8 8
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   9 9
Macaca_mulatta_69_1   (Rhesus monkey)   8 8
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   8 8
Otolemur_garnettii_69_3   (Small-eared galago)   8 8
Microcebus_murinus_69_1   (Gray mouse lemur)   11 8
Rattus_norvegicus_69_3.4   (Norway rat)   9 9
Mus_musculus_69_38   (House mouse)   10 10
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   10 8
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   7 7
Cavia_porcellus_69_3   (Domestic guinea pig)   8 8
Oryctolagus_cuniculus_69_2   (Rabbit)   9 9
Ochotona_princeps_69   (American pika)   8 8
Tupaia_belangeri_69   (Northern tree shrew)   7 7
Sus_scrofa_69_10.2   (Pig)   9 9
Bos_taurus_69_3.1   (Cattle)   7 7
Vicugna_pacos_69_1   (Alpaca)   7 7
Tursiops_truncatus_69_1   (Bottlenose dolphin)   9 8
Mustela_putorius_furo_69_1.0   (Domestic ferret)   8 8
Ailuropoda_melanoleuca_69_1   (Giant panda)   9 9
Canis_familiaris_69_3.1   (Dog)   10 10
Felis_catus_69   (Domestic cat)   9 7
Equus_caballus_69_2   (Horse)   8 8
Myotis_lucifugus_69_2.0   (Little brown bat)   8 8
Pteropus_vampyrus_69_1   (Large flying fox)   8 8
Sorex_araneus_69_1   (European shrew)   12 8
Erinaceus_europaeus_69   (Western European hedgehog)   8 8
Procavia_capensis_69_1   (Cape rock hyrax)   8 8
Loxodonta_africana_69_3   (African savanna elephant)   9 9
Echinops_telfairi_69   (Small Madagascar hedgehog)   8 8
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   11 8
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   7 7
Macropus_eugenii_69_1.0   (Tammar wallaby)   11 8
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   8 8
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   9 9
Ornithorhynchus_anatinus_69_5   (Platypus)   8 8
Petromyzon_marinus_69_7.0   (Sea lamprey)   6 6
Meleagris_gallopavo_69_2   (Turkey)   8 8
Gallus_gallus_69_2   (Chicken)   7 7
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   8 8
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   7 7
Anolis_carolinensis_69_2.0   (Green anole)   7 7
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   8 8
Latimeria_chalumnae_69_1   (Coelacanth)   7 7
Gadus_morhua_69_1   (Atlantic cod)   10 10
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   10 10
Takifugu_rubripes_69_4   (Torafugu)   10 10
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   9 9
Oryzias_latipes_69_1   (Japanese medaka)   9 9
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   10 10
Oreochromis_niloticus_69_1.0   (Nile tilapia)   9 9
Danio_rerio_69_9   (Zebrafish)   9 9
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   4 4
Ciona_intestinalis_69   (Vase tunicate)   4 4
Drosophila_melanogaster_69_5   (Fruit fly)   5 5
Caenorhabditis_elegans_69_215   (Roundworm)   4 4
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   1 1
Arabidopsis_thaliana_10   (Thale cress)   6 6

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   30 30
Homo_sapiens__(NCBI_version)   (Human)   12 12
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   9 9
Loa_loa_v3.3_(Request)   (Eye worm)   3 3
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   4 4
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   3 3
Lotus_japonicus__(Early_assembly) 11 11
Malus_x_domestica_(Duplicate)   (Apple)   14 13
Ricinus_communis__(Early_assembly)   (Castor bean)   4 4
Nicotiana_benthamiana_0.4.4_(Early_draft) 5 5
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   4 4
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   4 4
Phoenix_dactylifera__(Early_draft)   (Date palm)   5 5
Uniprot_2018_03_genome 6492 6414
Protein_Data_Bank_(all_PDB_sequenc) 6 6
NCBI_2017_08_genome 8445 8389
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 18 18
PDB_chains_(SCOP_1.75)_(PDB) 2 2
TargetDB__(Targets) 21 21
Protozoadb_2010_08_(Protozoadb) 313 307
STRING_v9.0.5_(STRING) 628 620

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]