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Domain combinations for Cysteine-rich DNA binding domain, (DM domain) superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Cysteine-rich DNA binding domain, (DM domain) domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   17 17
Pan_troglodytes_76_2.1.4   (Chimpanzee)   8 8
Gorilla_gorilla_76_3.1   (Western gorilla)   12 12
Pongo_abelii_76_2   (Sumatran orangutan)   5 5
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   8 8
Papio_anubis_76   (Olive baboon)   4 4
Macaca_mulatta_76_1   (Rhesus monkey)   6 6
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   17 17
Otolemur_garnettii_76_3   (Small-eared galago)   7 7
Microcebus_murinus_76_1   (Gray mouse lemur)   4 4
Rattus_norvegicus_76_5.0   (Norway rat)   8 8
Mus_musculus_76_38   (House mouse)   8 8
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   5 5
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   7 7
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   5 5
Cavia_porcellus_76_3   (Domestic guinea pig)   6 6
Oryctolagus_cuniculus_76_2   (Rabbit)   10 10
Ochotona_princeps_76   (American pika)   4 4
Tupaia_belangeri_76   (Northern tree shrew)   4 4
Sus_scrofa_76_10.2   (Pig)   9 9
Bos_taurus_76_3.1   (Cattle)   9 9
Ovis_aries_76_3.1   (Sheep)   8 8
Vicugna_pacos_76_1   (Alpaca)   3 3
Tursiops_truncatus_76_1   (Bottlenose dolphin)   5 5
Mustela_putorius_furo_76_1.0   (Domestic ferret)   6 6
Ailuropoda_melanoleuca_76_1   (Giant panda)   8 8
Canis_familiaris_76_3.1   (Dog)   8 8
Felis_catus_76_6.2   (Domestic cat)   4 4
Equus_caballus_76_2   (Horse)   1 1
Myotis_lucifugus_76_2.0   (Little brown bat)   5 5
Pteropus_vampyrus_76_1   (Large flying fox)   3 3
Erinaceus_europaeus_76   (Western European hedgehog)   3 3
Procavia_capensis_76_1   (Cape rock hyrax)   4 4
Loxodonta_africana_76_3   (African savanna elephant)   7 7
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   7 7
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1 1
Macropus_eugenii_76_1.0   (Tammar wallaby)   3 3
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   4 4
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   7 7
Ornithorhynchus_anatinus_76_5   (Platypus)   5 5
Saccoglossus_kowalevskii_v3.0 5 5
Petromyzon_marinus_76_7.0   (Sea lamprey)   2 2
Meleagris_gallopavo_76_2   (Turkey)   1 1
Gallus_gallus_76_4   (Chicken)   5 5
Anas_platyrhynchos_76_1.0   (Mallard)   1 1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   3 3
Ficedula_albicollis_76_1.0   (Collared flycatcher)   5 5
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   3 3
Anolis_carolinensis_76_2.0   (Green anole)   8 8
Xenopus_laevis_   (African clawed frog)   22 22
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   5 5
Latimeria_chalumnae_76_1   (Coelacanth)   5 5
Lepisosteus_oculatus_76   (Spotted gar)   7 7
Gadus_morhua_76_1   (Atlantic cod)   5 5
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   9 9
Takifugu_rubripes_76_4   (Torafugu)   11 11
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   8 8
Oryzias_latipes_76_1   (Japanese medaka)   7 7
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   6 6
Poecilia_formosa_76   (Amazon molly)   6 6
Oreochromis_niloticus_76_1.0   (Nile tilapia)   6 6
Astyanax_mexicanus_76   (Mexican tetra)   5 5
Danio_rerio_76_9   (Zebrafish)   9 9
Oikopleura_dioica 2 2
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   1 1
Ciona_intestinalis_76   (Vase tunicate)   2 2
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   4 4
Adineta_vaga 7 7
Octopus_bimaculoides_280 2 2
Crassostrea_gigas_22   (Pacific oyster)   3 3
Lottia_gigantea_   (Owl limpet)   4 4
Helobdella_robusta_ 3 3
Capitella_sp._I_ 5 5
Danaus_plexippus_OGS1.0   (Monarch butterfly)   3 3
Heliconius_melpomene_   (Postman butterfly)   3 3
Bombyx_mori_   (Domestic silkworm)   3 3
Nasonia_vitripennis_   (Jewel wasp)   1 1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   2 2
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   4 4
Linepithema_humile_v1.1   (Argentine ant)   4 4
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   4 4
Solenopsis_invicta_v.2.2.3   (Red fire ant)   3 3
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   3 3
Atta_cephalotes_v1.1 1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   4 4
Lucilia_cuprina   (Australian sheep blowfly)   4 4
Drosophila_grimshawi_1.3 4 4
Drosophila_willistoni_1.3 4 4
Drosophila_pseudoobscura_2.13 4 4
Drosophila_persimilis_1.3 3 3
Drosophila_suzukii 3 3
Drosophila_yakuba_1.3 4 4
Drosophila_simulans_1.3 4 4
Drosophila_sechellia_1.3 4 4
Drosophila_melanogaster_76_5   (Fruit fly)   8 8
Drosophila_erecta_1.3 3 3
Drosophila_ananassae_1.3 4 4
Drosophila_virilis_1.2 4 4
Drosophila_mojavensis_1.3 4 4
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   2 2
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   3 3
Anopheles_gambiae_49_3j   (African malaria mosquito)   5 5
Tribolium_castaneum_3.0   (Red flour beetle)   3 3
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   3 3
Acyrthosiphon_pisum_   (Pea aphid)   2 2
Rhodnius_prolixus_22 1 1
Daphnia_pulex_   (Common water flea)   6 5
Strigamia_maritima_22 5 5
Sarcoptes_scabiei 3 3
Tetranychus_urticae_   (Two-spotted spider mite)   11 11
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   6 6
Pristionchus_pacificus_ 14 12
Meloidogyne_incognita_   (Southern root-knot nematode)   11 9
Meloidogyne_hapla_ 7 5
Onchocerca_volvulus_22 10 7
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   13 10
Caenorhabditis_japonica_ 14 11
Caenorhabditis_brenneri_ 13 9
Caenorhabditis_remanei_ 17 14
Caenorhabditis_elegans_76_235   (Roundworm)   19 16
Caenorhabditis_briggsae_2 15 12
Trichinella_spiralis_22 2 2
Hymenolepis_microstoma_ 4 2
Echinococcus_multilocularis_ 4 2
Echinococcus_granulosus_ 4 2
Taenia_solium_   (Pork tapeworm)   5 3
Schistosoma_mansoni_ 6 4
Mnemiopsis_leidyi   (Sea walnut)   5 5
Acropora_digitifera_v1.0 6 6
Nematostella_vectensis_1.0   (Starlet sea anemone)   12 12
Hydra_vulgaris 4 4
Trichoplax_adhaerens_ 3 3

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   11 11
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   6 6
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   7 7
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   12 8
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   17 14

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   7 7
Pan_troglodytes_69_2.1.4   (Chimpanzee)   7 7
Gorilla_gorilla_69_3.1   (Western gorilla)   7 7
Pongo_abelii_69_2   (Sumatran orangutan)   5 5
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   6 6
Macaca_mulatta_69_1   (Rhesus monkey)   5 5
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   7 7
Otolemur_garnettii_69_3   (Small-eared galago)   7 7
Microcebus_murinus_69_1   (Gray mouse lemur)   4 4
Rattus_norvegicus_69_3.4   (Norway rat)   7 7
Mus_musculus_69_38   (House mouse)   7 7
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   5 5
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   7 7
Cavia_porcellus_69_3   (Domestic guinea pig)   6 6
Oryctolagus_cuniculus_69_2   (Rabbit)   8 8
Ochotona_princeps_69   (American pika)   4 4
Tupaia_belangeri_69   (Northern tree shrew)   4 4
Sus_scrofa_69_10.2   (Pig)   7 7
Bos_taurus_69_3.1   (Cattle)   8 8
Vicugna_pacos_69_1   (Alpaca)   3 3
Tursiops_truncatus_69_1   (Bottlenose dolphin)   5 5
Mustela_putorius_furo_69_1.0   (Domestic ferret)   6 6
Ailuropoda_melanoleuca_69_1   (Giant panda)   6 6
Canis_familiaris_69_3.1   (Dog)   6 6
Felis_catus_69   (Domestic cat)   2 2
Equus_caballus_69_2   (Horse)   1 1
Myotis_lucifugus_69_2.0   (Little brown bat)   4 4
Pteropus_vampyrus_69_1   (Large flying fox)   3 3
Erinaceus_europaeus_69   (Western European hedgehog)   3 3
Procavia_capensis_69_1   (Cape rock hyrax)   4 4
Loxodonta_africana_69_3   (African savanna elephant)   5 5
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   4 4
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1 1
Macropus_eugenii_69_1.0   (Tammar wallaby)   3 3
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   3 3
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   7 7
Ornithorhynchus_anatinus_69_5   (Platypus)   4 4
Petromyzon_marinus_69_7.0   (Sea lamprey)   2 2
Meleagris_gallopavo_69_2   (Turkey)   1 1
Gallus_gallus_69_2   (Chicken)   3 3
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   3 3
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   2 2
Anolis_carolinensis_69_2.0   (Green anole)   7 7
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   5 5
Latimeria_chalumnae_69_1   (Coelacanth)   5 5
Gadus_morhua_69_1   (Atlantic cod)   5 5
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   6 6
Takifugu_rubripes_69_4   (Torafugu)   6 6
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   7 7
Oryzias_latipes_69_1   (Japanese medaka)   4 4
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   6 6
Oreochromis_niloticus_69_1.0   (Nile tilapia)   6 6
Danio_rerio_69_9   (Zebrafish)   5 5
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1 1
Ciona_intestinalis_69   (Vase tunicate)   2 2
Drosophila_melanogaster_69_5   (Fruit fly)   4 4
Caenorhabditis_elegans_69_215   (Roundworm)   14 11

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   24 24
Homo_sapiens__(NCBI_version)   (Human)   9 9
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   7 7
Loa_loa_v3.3_(Request)   (Eye worm)   9 7
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   10 9
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   5 4
TargetDB__(Targets) 7 7
PDB_chains_(SCOP_1.75)_(PDB) 1 1
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 6 6
STRING_v9.0.5_(STRING) 293 278
NCBI_2017_08_genome 2499 2461
Uniprot_2018_03_genome 2791 2565
Protein_Data_Bank_(all_PDB_sequenc) 4 4

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