Domain combinations for Positive stranded ssRNA viruses superfamily in groups of genomes

• All genomes
• All eukaryote genomes (domain E)
• All bacterial genomes (domain B+A)
• All eubacterial genomes (domain B)
• All archaeal genomes (domain A)

Groups of genomes may be slower than individual genomes.

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Click on a genome below to view all domain combinations containing a Positive stranded ssRNA viruses domain in that genome.

Complete genomes

Genome		Number	Proteins
Homo_sapiens_76_38	(Human)	5	5
Pan_troglodytes_76_2.1.4	(Chimpanzee)	1	1
Gorilla_gorilla_76_3.1	(Western gorilla)	2	2
Pongo_abelii_76_2	(Sumatran orangutan)	1	1
Nomascus_leucogenys_76_1.0	(Northern white-cheeked gibbon)	1	1
Papio_anubis_76	(Olive baboon)	1	1
Macaca_mulatta_76_1	(Rhesus monkey)	2	2
Callithrix_jacchus_76_3.2.1	(White-tufted-ear marmoset)	3	3
Otolemur_garnettii_76_3	(Small-eared galago)	1	1
Rattus_norvegicus_76_5.0	(Norway rat)	2	2
Mus_musculus_76_38	(House mouse)	4	4
Dipodomys_ordii_76_1	(Ord's kangaroo rat)	1	1
Ictidomys_tridecemlineatus_76_2	(Thirteen-lined ground squirrel)	1	1
Heterocephalus_glaber_v1.7-2	(Naked mole-rat)	1	1
Cavia_porcellus_76_3	(Domestic guinea pig)	2	2
Oryctolagus_cuniculus_76_2	(Rabbit)	1	1
Ochotona_princeps_76	(American pika)	1	1
Tupaia_belangeri_76	(Northern tree shrew)	2	2
Sus_scrofa_76_10.2	(Pig)	2	2
Bos_taurus_76_3.1	(Cattle)	1	1
Ovis_aries_76_3.1	(Sheep)	1	1
Vicugna_pacos_76_1	(Alpaca)	1	1
Mustela_putorius_furo_76_1.0	(Domestic ferret)	1	1
Ailuropoda_melanoleuca_76_1	(Giant panda)	1	1
Canis_familiaris_76_3.1	(Dog)	2	2
Felis_catus_76_6.2	(Domestic cat)	1	1
Equus_caballus_76_2	(Horse)	1	1
Myotis_lucifugus_76_2.0	(Little brown bat)	1	1
Pteropus_vampyrus_76_1	(Large flying fox)	1	1
Sorex_araneus_76_1	(European shrew)	1	1
Loxodonta_africana_76_3	(African savanna elephant)	1	1
Choloepus_hoffmanni_76_1	(Hoffmann's two-fingered sloth)	1	1
Gallus_gallus_76_4	(Chicken)	2	2
Tetraodon_nigroviridis_76_8	(Spotted green pufferfish)	1	1
Takifugu_rubripes_76_4	(Torafugu)	2	2
Neurospora_tetrasperma_		1	1
Neurospora_discreta_FGSC_8579_		1	1
Neurospora_crassa_OR74A_		1	1
Aspergillus_fumigatus_Af293		1	1
Neosartorya_fischeri_NRRL_181_		1	1
Schizosaccharomyces_pombe	(Fission yeast)	1	1
Thellungiella_halophila_v173		1	1
Brassica_rapa_Chiifu-401_1.2	(Field mustard)	2	2
Capsella_rubella_v183		3	3
Arabidopsis_lyrata_	(Lyrate rockcress)	2	2
Arabidopsis_thaliana_10	(Thale cress)	4	4
Cryptosporidium_parvum_Iowa_II		1	1
Bacillus_halodurans_C-125		1	1
Bacillus_cereus_03BB102		1	1
Bacillus_anthracis_str._A0248		1	1
Rhodopirellula_baltica_SH_1		2	2
Candidatus_Solibacter_usitatus_Ellin6076		1	1
Desulfotalea_psychrophila_LSv54		1	1
Cupriavidus_metallidurans_CH34		1	1
Burkholderia_cenocepacia_HI2424		1	1
Xanthomonas_axonopodis_pv._citri_str._306		1	1
Xanthomonas_oryzae_pv._oryzae_PXO99A		2	2
Xanthomonas_campestris_pv._campestris_str._B100		1	1
Azotobacter_vinelandii_DJ		1	1

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Strains

Genome		Number	Proteins
Cryptococcus_neoformans_var._grubii_H99_		1	1
Cryptococcus_neoformans_B-3501A_		1	1
Cryptococcus_neoformans_JEC21_		1	1
Aspergillus_fumigatus_A1163_		1	1
Schizosaccharomyces_pombe_972h-_		1	1
Lactobacillus_acidophilus_La-14		1	1
Lactobacillus_acidophilus_NCFM		1	1
Bacillus_toyonensis_BCT-7112		1	1
Bacillus_thuringiensis_HD-771		1	1
Bacillus_thuringiensis_HD-789		1	1
Bacillus_thuringiensis_serovar_konkukian_str._97-27		1	1
Bacillus_cereus_biovar_anthracis_str._CI		1	1
Bacillus_cereus_AH820		1	1
Bacillus_cereus_G9842		1	1
Bacillus_cereus_Q1		1	1
Bacillus_cereus_F837/76		1	1
Bacillus_cereus_E33L		1	1
Bacillus_anthracis_str._H9401		1	1
Bacillus_anthracis_str._CDC_684		1	1
Bacillus_anthracis_str._'Ames_Ancestor'		1	1
Bacillus_anthracis_str._Sterne		1	1
Bacillus_anthracis_str._Ames		1	1
Desulfovibrio_vulgaris_RCH1		1	1
Desulfovibrio_vulgaris_str._Hildenborough		1	1
Burkholderia_cenocepacia_MC0-3		1	1
Burkholderia_cenocepacia_AU_1054		1	1
Xanthomonas_citri_subsp._citri_Aw12879		1	1
Xanthomonas_campestris_pv._vesicatoria_str._85-10		1	1
Xanthomonas_axonopodis_pv._citrumelo_F1		1	1
Xanthomonas_oryzae_pv._oryzae_MAFF_311018		2	2
Xanthomonas_oryzae_pv._oryzae_KACC_10331		2	2
Xanthomonas_campestris_pv._raphani_756C		1	1
Xanthomonas_campestris_pv._campestris_str._8004		1	1
Xanthomonas_campestris_pv._campestris_str._ATCC_33913		1	1
Escherichia_coli_str._'clone_D_i2'		1	1
Escherichia_coli_str._'clone_D_i14'		1	1
Escherichia_coli_ABU_83972		1	1
Escherichia_coli_IAI39		1	1
Escherichia_coli_SMS-3-5		1	1
Escherichia_coli_CFT073		1	1
Azotobacter_vinelandii_CA6		1	1
Azotobacter_vinelandii_CA		1	1

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Longest transcript per gene

Genome		Number	Proteins
Homo_sapiens_69_37	(Human)	1	1
Pan_troglodytes_69_2.1.4	(Chimpanzee)	1	1
Gorilla_gorilla_69_3.1	(Western gorilla)	1	1
Pongo_abelii_69_2	(Sumatran orangutan)	1	1
Nomascus_leucogenys_69_1.0	(Northern white-cheeked gibbon)	1	1
Macaca_mulatta_69_1	(Rhesus monkey)	1	1
Callithrix_jacchus_69_3.2.1	(White-tufted-ear marmoset)	1	1
Otolemur_garnettii_69_3	(Small-eared galago)	1	1
Rattus_norvegicus_69_3.4	(Norway rat)	1	1
Mus_musculus_69_38	(House mouse)	1	1
Dipodomys_ordii_69_1	(Ord's kangaroo rat)	1	1
Ictidomys_tridecemlineatus_69_2	(Thirteen-lined ground squirrel)	1	1
Cavia_porcellus_69_3	(Domestic guinea pig)	1	1
Oryctolagus_cuniculus_69_2	(Rabbit)	1	1
Ochotona_princeps_69	(American pika)	1	1
Tupaia_belangeri_69	(Northern tree shrew)	2	2
Sus_scrofa_69_10.2	(Pig)	1	1
Bos_taurus_69_3.1	(Cattle)	1	1
Vicugna_pacos_69_1	(Alpaca)	1	1
Mustela_putorius_furo_69_1.0	(Domestic ferret)	1	1
Ailuropoda_melanoleuca_69_1	(Giant panda)	1	1
Canis_familiaris_69_3.1	(Dog)	1	1
Felis_catus_69	(Domestic cat)	1	1
Equus_caballus_69_2	(Horse)	1	1
Myotis_lucifugus_69_2.0	(Little brown bat)	1	1
Pteropus_vampyrus_69_1	(Large flying fox)	1	1
Sorex_araneus_69_1	(European shrew)	1	1
Loxodonta_africana_69_3	(African savanna elephant)	1	1
Choloepus_hoffmanni_69_1	(Hoffmann's two-fingered sloth)	1	1
Gallus_gallus_69_2	(Chicken)	1	1
Tetraodon_nigroviridis_69_8	(Spotted green pufferfish)	1	1
Takifugu_rubripes_69_4	(Torafugu)	1	1
Arabidopsis_thaliana_10	(Thale cress)	2	2

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Others

Genome		Number	Proteins
Homo_sapiens_75_37_(old_version_GRC)	(Human)	5	5
Homo_sapiens__(NCBI_version)	(Human)	3	3
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)	(House mouse)	1	1
NCBI_plasmid_sequences_(Plasmids)		4	4
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ)		6634	6441
UniProt__viral_sequences_(Viral)		35200	31852
Uniprot_2018_03_genome		130788	118151
Protozoadb_2010_08_(Protozoadb)		2	2
TargetDB__(Targets)		13	10
STRING_v9.0.5_(STRING)		65	65
PDB_chains_(SCOP_1.75)_(PDB)		163	157
NCBI_viral_sequences_(Viral)		569	336
Protein_Data_Bank_(all_PDB_sequenc)		3183	2887
NCBI_2017_08_genome		3631	2665

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