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Domain combinations for CoA-transferase family III (CaiB/BaiF) superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a CoA-transferase family III (CaiB/BaiF) domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   12 12
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1 1
Gorilla_gorilla_76_3.1   (Western gorilla)   2 2
Pongo_abelii_76_2   (Sumatran orangutan)   2 2
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   2 2
Papio_anubis_76   (Olive baboon)   2 2
Macaca_mulatta_76_1   (Rhesus monkey)   5 5
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   4 4
Otolemur_garnettii_76_3   (Small-eared galago)   1 1
Microcebus_murinus_76_1   (Gray mouse lemur)   2 2
Rattus_norvegicus_76_5.0   (Norway rat)   4 3
Mus_musculus_76_38   (House mouse)   2 2
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   3 2
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   2 2
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   2 2
Cavia_porcellus_76_3   (Domestic guinea pig)   2 2
Oryctolagus_cuniculus_76_2   (Rabbit)   3 3
Ochotona_princeps_76   (American pika)   3 2
Tupaia_belangeri_76   (Northern tree shrew)   4 2
Sus_scrofa_76_10.2   (Pig)   3 3
Bos_taurus_76_3.1   (Cattle)   2 2
Ovis_aries_76_3.1   (Sheep)   2 2
Vicugna_pacos_76_1   (Alpaca)   2 2
Tursiops_truncatus_76_1   (Bottlenose dolphin)   2 2
Mustela_putorius_furo_76_1.0   (Domestic ferret)   2 2
Ailuropoda_melanoleuca_76_1   (Giant panda)   4 4
Canis_familiaris_76_3.1   (Dog)   2 2
Felis_catus_76_6.2   (Domestic cat)   3 3
Equus_caballus_76_2   (Horse)   3 3
Myotis_lucifugus_76_2.0   (Little brown bat)   3 3
Pteropus_vampyrus_76_1   (Large flying fox)   3 2
Sorex_araneus_76_1   (European shrew)   2 2
Erinaceus_europaeus_76   (Western European hedgehog)   3 2
Procavia_capensis_76_1   (Cape rock hyrax)   4 2
Loxodonta_africana_76_3   (African savanna elephant)   2 2
Echinops_telfairi_76   (Small Madagascar hedgehog)   3 2
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   4 4
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   3 2
Macropus_eugenii_76_1.0   (Tammar wallaby)   2 1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   2 2
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   2 2
Ornithorhynchus_anatinus_76_5   (Platypus)   3 3
Saccoglossus_kowalevskii_v3.0 3 3
Petromyzon_marinus_76_7.0   (Sea lamprey)   3 3
Meleagris_gallopavo_76_2   (Turkey)   2 2
Gallus_gallus_76_4   (Chicken)   4 4
Anas_platyrhynchos_76_1.0   (Mallard)   3 3
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   3 3
Ficedula_albicollis_76_1.0   (Collared flycatcher)   2 2
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   2 2
Anolis_carolinensis_76_2.0   (Green anole)   1 1
Xenopus_laevis_   (African clawed frog)   5 5
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   2 2
Latimeria_chalumnae_76_1   (Coelacanth)   1 1
Lepisosteus_oculatus_76   (Spotted gar)   2 2
Gadus_morhua_76_1   (Atlantic cod)   3 2
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   2 2
Takifugu_rubripes_76_4   (Torafugu)   1 1
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   5 5
Oryzias_latipes_76_1   (Japanese medaka)   3 2
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   2 2
Poecilia_formosa_76   (Amazon molly)   2 2
Oreochromis_niloticus_76_1.0   (Nile tilapia)   2 2
Astyanax_mexicanus_76   (Mexican tetra)   2 2
Danio_rerio_76_9   (Zebrafish)   4 4
Oikopleura_dioica 2 2
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   2 2
Ciona_intestinalis_76   (Vase tunicate)   2 2
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   3 3
Adineta_vaga 6 6
Octopus_bimaculoides_280 2 2
Crassostrea_gigas_22   (Pacific oyster)   2 2
Lottia_gigantea_   (Owl limpet)   2 2
Helobdella_robusta_ 1 1
Capitella_sp._I_ 2 2
Danaus_plexippus_OGS1.0   (Monarch butterfly)   2 2
Heliconius_melpomene_   (Postman butterfly)   3 3
Bombyx_mori_   (Domestic silkworm)   2 2
Nasonia_vitripennis_   (Jewel wasp)   2 2
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   14 14
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   2 2
Linepithema_humile_v1.1   (Argentine ant)   3 3
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   2 2
Solenopsis_invicta_v.2.2.3   (Red fire ant)   4 2
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   2 2
Atta_cephalotes_v1.1 3 3
Camponotus_floridanus_v3.3   (Florida carpenter ant)   2 2
Lucilia_cuprina   (Australian sheep blowfly)   2 2
Drosophila_grimshawi_1.3 2 2
Drosophila_willistoni_1.3 2 2
Drosophila_pseudoobscura_2.13 2 2
Drosophila_persimilis_1.3 2 2
Drosophila_suzukii 4 4
Drosophila_yakuba_1.3 2 2
Drosophila_simulans_1.3 2 2
Drosophila_sechellia_1.3 2 2
Drosophila_melanogaster_76_5   (Fruit fly)   2 2
Drosophila_erecta_1.3 2 2
Drosophila_ananassae_1.3 2 2
Drosophila_virilis_1.2 2 2
Drosophila_mojavensis_1.3 2 2
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   3 3
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   2 2
Anopheles_darlingi_22   (American malaria mosquito)   2 2
Anopheles_gambiae_49_3j   (African malaria mosquito)   3 3
Tribolium_castaneum_3.0   (Red flour beetle)   2 2
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   2 2
Acyrthosiphon_pisum_   (Pea aphid)   4 4
Rhodnius_prolixus_22 2 2
Daphnia_pulex_   (Common water flea)   2 2
Strigamia_maritima_22 1 1
Sarcoptes_scabiei 1 1
Tetranychus_urticae_   (Two-spotted spider mite)   2 2
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   2 2
Pristionchus_pacificus_ 3 3
Meloidogyne_incognita_   (Southern root-knot nematode)   3 3
Meloidogyne_hapla_ 1 1
Caenorhabditis_japonica_ 5 5
Caenorhabditis_brenneri_ 2 2
Caenorhabditis_remanei_ 2 2
Caenorhabditis_elegans_76_235   (Roundworm)   3 3
Caenorhabditis_briggsae_2 1 1
Hymenolepis_microstoma_ 1 1
Taenia_solium_   (Pork tapeworm)   1 1
Mnemiopsis_leidyi   (Sea walnut)   2 2
Acropora_digitifera_v1.0 2 2
Nematostella_vectensis_1.0   (Starlet sea anemone)   2 2
Hydra_vulgaris 2 2
Amphimedon_queenslandica 4 4
Trichoplax_adhaerens_ 2 2
Proterospongia_sp._ATCC_50818_ 2 1
Monosiga_brevicollis_ 1 1
Sphaeroforma_arctica_JP610_ 7 6
Capsaspora_owczarzaki_ATCC_30864_ 2 2
Conidiobolus_coronatus_NRRL28638_v1.0 2 2
Mortierella_verticillata_NRRL_6337_ 3 3
Phycomyces_blakesleeanus_ 3 3
Rhizopus_oryzae_RA_99-880_ 3 3
Mucor_circinelloides_ 5 4
Rhizomucor_miehei_CAU432_ 5 4
Sporisorium_reilianum_22 4 3
Ustilago_maydis_ 4 3
Mixia_osmundae_IAM_14324_v1.0 5 4
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 1 1
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 1 1
Melampsora_laricis-populina_ 1 1
Rhodotorula_graminis_WP1_v1.0 5 4
Sporobolomyces_roseus_IAM_13481_ 2 2
Microbotryum_violaceum_22 5 3
Wallemia_sebi_v1.0 1 1
Sphaerobolus_stellatus_v1.0 5 4
Piloderma_croceum_F_1598_v1.0 6 5
Serpula_lacrymans_var._lacrymans_S7.9_ 5 4
Coniophora_puteana 4 3
Hydnomerulius_pinastri_v2.0 5 4
Paxillus_rubicundulus_Ve08.2h10_v1.0 3 3
Pisolithus_microcarpus_441_v1.0 3 3
Pisolithus_tinctorius_Marx_270_v1.0 3 3
Scleroderma_citrinum_Foug_A_v1.0 3 3
Coprinopsis_cinerea_okayama7_130_v3 5 4
Pleurotus_ostreatus_   (Oyster mushroom)   3 3
Amanita_thiersii_Skay4041_v1.0 5 4
Amanita_muscaria_Koide_v1.0   (Fly agaric)   5 4
Galerina_marginata_v1.0 7 5
Hebeloma_cylindrosporum_h7_v2.0 7 5
Laccaria_bicolor_S238N-H82_ 7 5
Agaricus_bisporus_var._bisporus_ 5 4
Schizophyllum_commune_ 4 3
Stereum_hirsutum_FP-91666_SS1__v1.0 6 4
Heterobasidion_annosum_ 5 4
Gloeophyllum_trabeumv1.0 7 5
Punctularia_strigosozonata_v1.0 4 3
Sebacina_vermifera_MAFF_305830_v1.0 4 3
Fomitiporia_mediterranea_v1.0 5 4
Tulasnella_calospora_AL13/4D_v1.0 1 1
Postia_placenta_ 7 5
Wolfiporia_cocos_MD-104_SS10__v1.0 4 3
Fomitopsis_pinicolav1.0 4 3
Fomitopsis_pinicola_FP-58527_SS1_v3.0 4 3
Phanerochaete_chrysosporium_RP-78_2.1 5 4
Dichomitus_squalens 4 3
Trametes_versicolor_v1.0 5 4
Tremella_mesenterica_   (Witches' butter)   1 1
Daldinia_eschscholzii_EC12_v1.0 7 5
Apiospora_montagnei_NRRL_25634_v1.0 10 7
Magnaporthe_poae_ATCC_64411_22 5 4
Magnaporthe_grisea_70-15_ 13 8
Podospora_anserina_ 6 4
Sporotrichum_thermophile_ATCC_42464_ 4 3
Thielavia_terrestris_NRRL_8126_ 6 4
Chaetomium_globosum_CBS_148.51_ 4 3
Neurospora_tetrasperma_ 5 3
Neurospora_discreta_FGSC_8579_ 4 3
Neurospora_crassa_OR74A_ 6 4
Cryphonectria_parasitica_   (Chestnut blight fungus)   5 4
Verticillium_albo-atrum_VaMs.102_ 8 6
Verticillium_dahliae_VdLs.17_ 8 6
Acremonium_alcalophilumv_1.0 7 5
Glomerella_graminicola_22 11 7
Fusarium_graminearum_ 10 6
Nectria_haematococca_mpVI_ 21 13
Fusarium_oxysporum_f._sp._lycopersici_4286_ 17 11
Fusarium_verticillioides_7600_ 16 10
Trichoderma_asperellum_CBS_433.97_v1.0 16 10
Trichoderma_atroviride_ 13 8
Trichoderma_citrinoviride_v1.0 6 4
Trichoderma_reesei_1.2 6 4
Trichoderma_virens_Gv29-8_ 13 8
Trichoderma_longibrachiatum_ATCC_18648_v1.0 6 4
Trichoderma_harzianum_CBS_226.95_v1.0 11 7
Amorphotheca_resinae_v1.0   (Creosote fungus)   6 4
Botrytis_cinerea_B05.10_ 5 4
Sclerotinia_sclerotiorum_ 4 3
Didymella_exigua_CBS_183.55_v1.0 10 6
Leptosphaeria_maculans_22 5 4
Setosphaeria_turcica_v1.0 15 9
Cochliobolus_miyabeanus_ATCC_44560_v1.0 14 9
Cochliobolus_victoriae_FI3_v1.0 18 12
Cochliobolus_carbonum_26-R-13_v1.0 16 11
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   14 9
Alternaria_brassicicola_ 7 6
Cochliobolus_lunatus_m118_v2.0 9 6
Pyrenophora_teres_f._teres_22 5 4
Pyrenophora_tritici-repentis_ 6 4
Stagonospora_nodorum_ 11 7
Mycosphaerella_graminicola_IPO323_ 6 5
Zasmidium_cellare_ATCC_36951_v1.0 23 14
Dothistroma_septosporum 10 8
Septoria_musiva_v1.0 2 2
Mycosphaerella_fijiensis_CIRAD86_ 8 6
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 8 5
Paracoccidioides_brasiliensis_Pb18_ 3 3
Coccidioides_posadasii_RMSCC_3488_ 9 6
Coccidioides_immitis_RS_ 9 6
Ajellomyces_dermatitidis_SLH14081_ 3 3
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 2 2
Microsporum_canis_CBS_113480_ 2 2
Trichophyton_equinum_CBS_127.97_ 2 2
Trichophyton_verrucosum_HKI_0517_ 2 2
Arthroderma_benhamiae_CBS_112371_ 2 2
Trichophyton_tonsurans_CBS_112818_ 2 2
Trichophyton_rubrum_CBS_118892_ 2 2
Uncinocarpus_reesii_1704_ 6 5
Aspergillus_zonatus_v1.0 6 4
Penicillium_chrysogenum_Wisconsin_54-1255_ 8 6
Penicillium_chrysogenum_v1.0 8 6
Aspergillus_acidus_v1.0 15 9
Aspergillus_fumigatus_Af293 7 5
Aspergillus_brasiliensis_v1.0 17 10
Aspergillus_nidulans_FGSC_A4_ 9 6
Aspergillus_sydowii_v1.0 19 13
Aspergillus_versicolor_v1.0 19 13
Aspergillus_glaucus 9 6
Aspergillus_carbonarius_ITEM_5010_ 11 7
Neosartorya_fischeri_NRRL_181_ 7 5
Aspergillus_terreus_NIH2624_ 10 7
Aspergillus_tubingensis_v1.0 15 9
Aspergillus_wentii_v1.0 18 12
Aspergillus_oryzae_RIB40_ 16 10
Aspergillus_niger_22 16 10
Aspergillus_niger_ATCC_1015_ 12 7
Aspergillus_flavus_NRRL3357_ 15 9
Aspergillus_clavatus_NRRL_1_ 7 5
Penicillium_marneffei_ATCC_18224_ 8 6
Tuber_melanosporum_Mel28_22 2 2
Tuber_melanosporum_Vittad_   (Perigord truffle)   2 2
Candida_dubliniensis_CD36_ 2 1
Candida_tropicalis_MYA-3404_ 2 1
Candida_albicans_SC5314 2 1
Babjeviella_inositovora_NRRL_Y-12698_v1.0 6 3
Pichia_stipitis_CBS_6054_ 2 1
Debaromyces_hansenii 2 1
Wickerhamomyces_anomalus 2 1
Yarrowia_lipolytica_CLIB122 4 3
Catenaria_anguillulae_PL171_v1.0 1 1
Allomyces_macrogynus_ATCC_38327_ 2 2
Spizellomyces_punctatus_DAOM_BR117_ 3 2
Dictyostelium_discoideum 2 1
Dictyostelium_purpureum_ 1 1
Entamoeba_invadens_1.2 1 1
Medicago_truncatula_   (Barrel medic)   1 1
Physcomitrella_patens 1 1
Coccomyxa_subellipsoidea_sp._C-169_v2 1 1
Asterochloris_sp._Cgr/DA1pho_v1.0 1 1
Chlorella_variabilis_sp._NC64A_ 1 1
Chlorella_vulgaris_ 1 1
Volvox_carteri_f._nagariensis_ 1 1
Volvox_carteri_v199 1 1
Chlamydomonas_reinhardtii_4.0 1 1
Thecamonas_trahens_ATCC_50062_ 3 3
Bigelowiella_natans_CCMP2755_22 2 2
Aureococcus_anophagefferens_ 2 1
Pythium_iwayamai_DAOM_BR242034_22 1 1
Pythium_arrhenomanes_ATCC_12531_22 1 1
Pythium_ultimum_v1.7-2 1 1
Pythium_aphanidermatum_DAOM_BR444_22 1 1
Pythium_irregulare_DAOM_BR486_22 1 1
Pythium_vexans_DAOM_BR484_22 1 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1 1
Phytophthora_sojae_1.1 1 1
Phytophthora_infestans_T30-4_ 1 1
Phytophthora_capsici_ 1 1
Hyaloperonospora_arabidopsidis_22 1 1
Thalassiosira_pseudonana_CCMP1335 1 1
Perkinsus_marinus_ATCC_50983_ 6 5
Paramecium_tetraurelia_ 3 3
Tetrahymena_thermophila_SB210_1_ 2 2
Ichthyophthirius_multifiliis_strain_G5_ 1 1
Symbiodinium_minutum_clade_B1_v1.2 11 10
Naegleria_gruberi_ 4 3
Emiliania_huxleyi_CCMP1516_ 9 5
Conexibacter_woesei_DSM_14684 8 8
Cryptobacterium_curtum_DSM_15641 1 1
Eggerthella_sp._YY7918 13 13
Eggerthella_lenta_DSM_2243 6 6
Slackia_heliotrinireducens_DSM_20476 1 1
Rubrobacter_xylanophilus_DSM_9941 7 7
Ilumatobacter_coccineus 10 9
Acidimicrobium_ferrooxidans_DSM_10331 3 3
Thermobispora_bispora_DSM_43833 6 5
Nakamurella_multipartita_DSM_44233 4 4
Modestobacter_marinus 4 4
Blastococcus_saxobsidens_DD2 8 7
Geodermatophilus_obscurus_DSM_43160 3 3
Kineococcus_radiotolerans_SRS30216 2 1
Catenulispora_acidiphila_DSM_44928 6 5
Stackebrandtia_nassauensis_DSM_44728 2 2
Frankia_symbiont_of_Datisca_glomerata 3 3
Frankia_sp._EAN1pec 41 36
Frankia_alni_ACN14a 36 26
Thermobifida_fusca_YX 5 5
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 8 7
Thermomonospora_curvata_DSM_43183 4 4
Streptosporangium_roseum_DSM_43021 11 9
Kitasatospora_setae_KM-6054 3 2
Streptomyces_coelicolor_A3(2) 6 6
Streptomyces_sp._PAMC26508 3 3
Streptomyces_flavogriseus_ATCC_33331 3 3
Streptomyces_sp._SirexAA-E 2 2
Streptomyces_griseus_subsp._griseus_NBRC_13350 3 3
Streptomyces_bingchenggensis_BCW-1 8 7
Streptomyces_violaceusniger_Tu_4113 9 7
Streptomyces_avermitilis_MA-4680 7 6
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 6 6
Streptomyces_scabiei_87.22 8 7
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 7 6
Actinosynnema_mirum_DSM_43827 4 3
Saccharomonospora_viridis_DSM_43017 5 4
Pseudonocardia_dioxanivorans_CB1190 38 35
Saccharopolyspora_erythraea_NRRL_2338 15 12
Amycolatopsis_mediterranei_U32 18 15
Kribbella_flavida_DSM_17836 7 6
Nocardioides_sp._JS614 11 11
Propionibacterium_acnes_SK137 1 1
Microlunatus_phosphovorus_NM-1 5 4
Propionibacterium_freudenreichii_subsp._shermanii_CIRM-BIA1 2 2
Salinispora_arenicola_CNS-205 1 1
Salinispora_tropica_CNB-440 2 2
Verrucosispora_maris_AB-18-032 3 3
Micromonospora_sp._L5 5 5
Micromonospora_aurantiaca_ATCC_27029 7 7
Actinoplanes_sp._N902-109 2 2
Actinoplanes_sp._SE50/110 2 2
Actinoplanes_missouriensis_431 5 5
Segniliparus_rotundus_DSM_44985 3 2
Tsukamurella_paurometabola_DSM_20162 6 4
Gordonia_sp._KTR9 14 12
Gordonia_polyisoprenivorans_VH2 15 11
Gordonia_bronchialis_DSM_43247 6 6
Rhodococcus_jostii_RHA1 32 30
Rhodococcus_equi_103S 13 9
Rhodococcus_opacus_B4 52 49
Rhodococcus_erythropolis_PR4 19 18
Nocardia_cyriacigeorgica_GUH-2 4 3
Nocardia_farcinica_IFM_10152 6 5
Amycolicicoccus_subflavus_DQS3-9A1 5 4
Mycobacterium_massiliense_str._GO_06 6 6
Mycobacterium_abscessus_ATCC_19977 8 6
Mycobacterium_sp._JLS 22 19
Mycobacterium_intracellulare_ATCC_13950 34 27
Mycobacterium_avium_104 40 31
Mycobacterium_vanbaalenii_PYR-1 17 15
Mycobacterium_canettii_CIPT_140010059 5 4
Mycobacterium_africanum_GM041182 5 4
Mycobacterium_tuberculosis_KZN_1435 5 4
Mycobacterium_tuberculosis 5 4
Mycobacterium_bovis_BCG_str._Pasteur_1173P2 5 4
Mycobacterium_rhodesiae_NBB3 35 28
Mycobacterium_ulcerans_Agy99 10 9
Mycobacterium_gilvum_PYR-GCK 18 16
Mycobacterium_chubuense_NBB4 20 16
Mycobacterium_marinum_M 16 13
Mycobacterium_smegmatis_str._MC2_155 32 29
Corynebacterium_resistens_DSM_45100 1 1
Corynebacterium_aurimucosum_ATCC_700975 1 1
Corynebacterium_efficiens_YS-314 2 2
Corynebacterium_urealyticum_DSM_7109 1 1
Corynebacterium_jeikeium_K411 2 2
Corynebacterium_variabile_DSM_44702 2 2
Corynebacterium_pseudotuberculosis_316 1 1
Kytococcus_sedentarius_DSM_20547 3 2
Microbacterium_testaceum_StLB037 2 2
Intrasporangium_calvum_DSM_43043 4 4
Xylanimonas_cellulosilytica_DSM_15894 2 1
Arthrobacter_phenanthrenivorans_Sphe3 1 1
Arthrobacter_chlorophenolicus_A6 5 4
Arthrobacter_aurescens_TC1 5 4
Arthrobacter_arilaitensis_Re117 3 2
Kocuria_rhizophila_DC2201 2 2
Arthrobacter_sp._Rue61a 5 5
Arthrobacter_sp._FB24 2 2
Renibacterium_salmoninarum_ATCC_33209 5 5
Micrococcus_luteus_NCTC_2665 2 2
Bifidobacterium_animalis_subsp._lactis_Bl-04 1 1
Bifidobacterium_dentium_Bd1 1 1
Arcanobacterium_haemolyticum_DSM_20595 1 1
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 2 2
Thermomicrobium_roseum_DSM_5159 2 2
Sphaerobacter_thermophilus_DSM_20745 6 6
Herpetosiphon_aurantiacus_DSM_785 3 3
Roseiflexus_sp._RS-1 6 6
Roseiflexus_castenholzii_DSM_13941 8 8
Chloroflexus_sp._MS-G 8 8
Chloroflexus_sp._Y-400-fl 6 6
Chloroflexus_aggregans_DSM_9485 6 6
Chloroflexus_aurantiacus_J-10-fl 6 6
Truepera_radiovictrix_DSM_17093 1 1
Deinococcus_deserti_VCD115 1 1
Deinococcus_proteolyticus_MRP 1 1
Deinococcus_radiodurans_R1 2 2
Oceanithermus_profundus_DSM_14977 2 2
Marinithermus_hydrothermalis_DSM_14884 2 2
Meiothermus_silvanus_DSM_9946 2 2
Meiothermus_ruber_DSM_1279 1 1
Thermus_sp._CCB_US3_UF1 2 2
Thermus_scotoductus_SA-01 2 2
Thermus_thermophilus_HB27 2 2
Acidaminococcus_intestini_RyC-MR95 1 1
Symbiobacterium_thermophilum_IAM_14863 1 1
Clostridiales_genomosp._BVAB3_str._UPII9-5 1 1
Thermaerobacter_marianensis_DSM_12885 3 3
Sulfobacillus_acidophilus_DSM_10332 4 4
Oscillibacter_valericigenes_Sjm18-20 1 1
butyrate-producing_bacterium_SS3/4 1 1
Desulfosporosinus_acidiphilus_SJ4 2 2
Desulfosporosinus_orientis_DSM_765 6 6
Syntrophobotulus_glycolicus_DSM_8271 1 1
Desulfitobacterium_hafniense_Y51 8 8
Desulfitobacterium_dehalogenans_ATCC_51507 2 2
Desulfotomaculum_reducens_MI-1 1 1
Desulfotomaculum_kuznetsovii_DSM_6115 2 2
Eubacterium_limosum_KIST612 1 1
Clostridium_difficile_630 3 3
Clostridium_saccharolyticum_WM1 3 3
Roseburia_hominis_A2-183 2 2
Syntrophothermus_lipocalidus_DSM_12680 5 5
Alkaliphilus_oremlandii_OhILAs 2 2
Alkaliphilus_metalliredigens_QYMF 1 1
Clostridium_ljungdahlii_DSM_13528 1 1
Clostridium_tetani_E88 1 1
Clostridium_botulinum_A_str._ATCC_3502 2 2
Carboxydothermus_hydrogenoformans_Z-2901 1 1
Aerococcus_urinae_ACS-120-V-Col10a 2 2
Lactobacillus_kefiranofaciens_ZW3 1 1
Lactobacillus_amylovorus_GRL1118 2 2
Lactobacillus_reuteri_DSM_20016 2 2
Lactobacillus_gasseri_ATCC_33323 2 2
Lactobacillus_acidophilus_30SC 2 2
Kyrpidia_tusciae_DSM_2912 6 6
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_DSM_446 1 1
Brevibacillus_brevis_NBRC_100599 1 1
Paenibacillus_terrae_HPL-003 2 1
Solibacillus_silvestris_StLB046 4 4
Geobacillus_thermoglucosidasius_C56-YS93 2 2
Lysinibacillus_sphaericus_C3-41 2 2
Oceanobacillus_iheyensis_HTE831 3 3
Anoxybacillus_flavithermus_WK1 1 1
Geobacillus_thermoleovorans_CCB_US3_UF5 4 4
Geobacillus_kaustophilus_HTA426 2 2
Geobacillus_sp._GHH01 4 4
Geobacillus_sp._WCH70 2 2
Geobacillus_thermodenitrificans_NG80-2 3 3
Halobacillus_halophilus_DSM_2266 1 1
Bacillus_sp._1NLA3E 4 4
Bacillus_pseudofirmus_OF4 1 1
Bacillus_clausii_KSM-K16 1 1
Bacillus_megaterium_DSM_319 3 2
Bacillus_coagulans_2-6 1 1
Candidatus_Cloacamonas_acidaminovorans 1 1
Gemmatimonas_aurantiaca_T-27 2 2
Haliscomenobacter_hydrossis_DSM_1100 1 1
Saprospira_grandis_str._Lewin 1 1
Niastella_koreensis_GR20-10 2 2
Salinibacter_ruber_M8 1 1
Rhodothermus_marinus_DSM_4252 1 1
Flexibacter_litoralis_DSM_6794 1 1
Marivirga_tractuosa_DSM_4126 1 1
Fibrella_aestuarina 1 1
Runella_slithyformis_DSM_19594 1 1
Pedobacter_saltans_DSM_12145 2 2
Pedobacter_heparinus_DSM_2366 2 2
Sphingobacterium_sp._21 2 2
Fluviicola_taffensis_DSM_16823 1 1
Zobellia_galactanivorans 1 1
Flavobacterium_johnsoniae_UW101 2 2
Coraliomargarita_akajimensis_DSM_45221 2 2
Fretibacterium_fastidiosum 1 1
Thermovirga_lienii_DSM_17291 2 2
Aminobacterium_colombiense_DSM_12261 1 1
Thermanaerovibrio_acidaminovorans_DSM_6589 1 1
Turneriella_parva_DSM_21527 1 1
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._L550 1 1
Leptospira_interrogans_serovar_Lai_str._IPAV 1 1
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 1 1
Mesotoga_prima_MesG1.Ag.4.2 1 1
Candidatus_Chloracidobacterium_thermophilum_B 1 1
Candidatus_Solibacter_usitatus_Ellin6076 2 2
Granulicella_tundricola_MP5ACTX9 2 1
Granulicella_mallensis_MP5ACTX8 1 1
Sebaldella_termitidis_ATCC_33386 1 1
Candidatus_Methylomirabilis_oxyfera 1 1
Bacteriovorax_marinus_SJ 1 1
Desulfarculus_baarsii_DSM_2075 1 1
Desulfobacca_acetoxidans_DSM_11109 2 2
Desulfomonile_tiedjei_DSM_6799 3 3
Syntrophobacter_fumaroxidans_MPOB 6 6
Desulfobulbus_propionicus_DSM_2032 1 1
Desulfatibacillum_alkenivorans_AK-01 1 1
Desulfobacterium_autotrophicum_HRM2 2 2
Desulfococcus_oleovorans_Hxd3 1 1
Desulfovibrio_magneticus_RS-1 2 2
Geobacter_daltonii_FRC-32 2 2
Geobacter_bemidjiensis_Bem 1 1
Geobacter_metallireducens_GS-15 3 3
Haliangium_ochraceum_DSM_14365 1 1
Sorangium_cellulosum_'So_ce_56' 1 1
Anaeromyxobacter_sp._Fw109-5 1 1
Anaeromyxobacter_dehalogenans_2CP-1 1 1
Stigmatella_aurantiaca_DW4/3-1 1 1
Corallococcus_coralloides_DSM_2259 1 1
Myxococcus_xanthus_DK_1622 1 1
Myxococcus_fulvus_HW-1 1 1
Dechloromonas_aromatica_RCB 2 2
Thauera_sp._MZ1T 3 3
Azoarcus_sp._KH32C 6 6
Azoarcus_sp._BH72 2 2
Aromatoleum_aromaticum_EbN1 9 9
Dechlorosoma_suillum_PS 2 2
Pseudogulbenkiania_sp._NH8B 1 1
Laribacter_hongkongensis_HLHK9 1 1
Chromobacterium_violaceum_ATCC_12472 3 2
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 6 6
beta_proteobacterium_CB 9 9
Methylibium_petroleiphilum_PM1 4 4
Thiomonas_arsenitoxydans 2 2
Thiomonas_intermedia_K12 2 2
Rubrivivax_gelatinosus_IL144 3 3
Leptothrix_cholodnii_SP-6 7 7
Burkholderia_rhizoxinica_HKI_454 1 1
Burkholderia_phytofirmans_PsJN 17 16
Burkholderia_phymatum_STM815 16 14
Burkholderia_xenovorans_LB400 31 29
Ralstonia_eutropha_JMP134 41 39
Cupriavidus_taiwanensis_LMG_19424 29 27
Cupriavidus_metallidurans_CH34 40 38
Cupriavidus_necator_N-1 55 53
Ralstonia_eutropha_H16 49 48
Ralstonia_pickettii_12D 8 7
Ralstonia_solanacearum_CFBP2957 6 5
Polynucleobacter_necessarius_subsp._asymbioticus_QLW-P1DMWA-1 6 6
Burkholderia_sp._RPE64 14 13
Burkholderia_sp._CCGE1002 17 16
Burkholderia_thailandensis_E264 9 8
Burkholderia_pseudomallei_1106a 8 7
Burkholderia_mallei_SAVP1 8 7
Burkholderia_ambifaria_AMMD 17 15
Burkholderia_cenocepacia_HI2424 14 13
Burkholderia_multivorans_ATCC_17616 10 9
Burkholderia_vietnamiensis_G4 8 7
Burkholderia_gladioli_BSR3 13 11
Burkholderia_glumae_BGR1 6 5
Verminephrobacter_eiseniae_EF01-2 29 29
Alicycliphilus_denitrificans_K601 45 45
Ramlibacter_tataouinensis_TTB310 13 13
Delftia_sp._Cs1-4 26 25
Delftia_acidovorans_SPH-1 25 24
Polaromonas_sp._JS666 19 19
Polaromonas_naphthalenivorans_CJ2 8 8
Variovorax_paradoxus_S110 26 25
Rhodoferax_ferrireducens_T118 10 10
Acidovorax_ebreus_TPSY 8 8
Acidovorax_sp._KKS102 7 7
Acidovorax_sp._JS42 10 10
Acidovorax_citrulli_AAC00-1 8 8
Acidovorax_avenae_subsp._avenae_ATCC_19860 10 9
Comamonas_testosteroni_CNB-2 13 13
Herminiimonas_arsenicoxydans 4 4
Collimonas_fungivorans_Ter331 6 5
Janthinobacterium_sp._Marseille 5 5
Herbaspirillum_seropedicae_SmR1 4 3
Pusillimonas_sp._T7-7 18 18
Advenella_kashmirensis_WT001 28 26
Taylorella_asinigenitalis_MCE3 1 1
Taylorella_equigenitalis_MCE9 1 1
Bordetella_petrii_DSM_12804 42 41
Bordetella_avium_197N 7 6
Bordetella_pertussis_Tohama_I 18 17
Bordetella_parapertussis_12822 36 36
Bordetella_bronchiseptica_RB50 57 56
Achromobacter_xylosoxidans_A8 54 53
Achromobacter_xylosoxidans 23 21
Nitrosospira_multiformis_ATCC_25196 2 1
Nitrosomonas_sp._Is79A3 2 1
Nitrosomonas_europaea_ATCC_19718 2 1
Asticcacaulis_excentricus_CB_48 1 1
Brevundimonas_subvibrioides_ATCC_15264 3 3
Caulobacter_sp._K31 6 6
Caulobacter_crescentus_NA1000 3 3
Caulobacter_segnis_ATCC_21756 4 4
Phenylobacterium_zucineum_HLK1 10 10
Erythrobacter_litoralis_HTCC2594 6 6
Sphingopyxis_alaskensis_RB2256 9 8
Novosphingobium_sp._PP1Y 11 11
Novosphingobium_aromaticivorans_DSM_12444 7 7
Sphingobium_sp._SYK-6 1 1
Sphingobium_japonicum_UT26S 5 4
Sphingobium_chlorophenolicum_L-1 17 15
Sphingomonas_sp._MM-1 9 7
Sphingomonas_wittichii_RW1 15 15
Maricaulis_maris_MCS10 2 2
Hirschia_baltica_ATCC_49814 4 4
Hyphomonas_neptunium_ATCC_15444 7 7
Dinoroseobacter_shibae_DFL_12 8 7
Phaeobacter_gallaeciensis_2.10 6 5
Pseudovibrio_sp._FO-BEG1 6 5
Jannaschia_sp._CCS1 5 5
Ruegeria_sp._TM1040 7 6
Ruegeria_pomeroyi_DSS-3 9 7
Roseobacter_litoralis_Och_149 3 3
Roseobacter_denitrificans_OCh_114 2 2
Rhodobacter_sphaeroides_ATCC_17029 2 2
Rhodobacter_capsulatus_SB_1003 2 2
Paracoccus_denitrificans_PD1222 9 9
Rhodospirillum_photometricum_DSM_122 2 2
Tistrella_mobilis_KA081020-065 14 14
Magnetospirillum_magneticum_AMB-1 8 7
Rhodospirillum_centenum_SW 2 2
Rhodospirillum_rubrum_F11 3 3
Azospirillum_lipoferum_4B 5 5
Azospirillum_sp._B510 7 6
Azospirillum_brasilense_Sp245 11 11
Gluconacetobacter_diazotrophicus_PAl_5 1 1
Acidiphilium_multivorum_AIU301 4 4
Acidiphilium_cryptum_JF-5 5 5
Acetobacter_pasteurianus_IFO_3283-01 2 2
Polymorphum_gilvum_SL003B-26A1 7 7
Micavibrio_aeruginosavorus_ARL-13 1 1
Candidatus_Puniceispirillum_marinum_IMCC1322 2 2
alpha_proteobacterium_HIMB59 1 1
Candidatus_Pelagibacter_sp._IMCC9063 2 2
Starkeya_novella_DSM_506 9 9
Xanthobacter_autotrophicus_Py2 6 6
Azorhizobium_caulinodans_ORS_571 10 9
Methylobacterium_chloromethanicum_CM4 3 3
Methylobacterium_extorquens_AM1 3 3
Methylobacterium_sp._4-46 11 10
Methylobacterium_populi_BJ001 3 3
Methylobacterium_nodulans_ORS_2060 14 14
Methylobacterium_radiotolerans_JCM_2831 10 9
Parvibaculum_lavamentivorans_DS-1 6 6
Ochrobactrum_anthropi_ATCC_49188 2 2
Brucella_microti_CCM_4915 4 4
Brucella_pinnipedialis_B2/94 3 3
Brucella_canis_ATCC_23365 4 4
Brucella_suis_ATCC_23445 4 4
Brucella_melitensis_ATCC_23457 4 4
Brucella_ovis_ATCC_25840 3 3
Brucella_abortus_S19 3 3
Sinorhizobium_fredii_NGR234 3 2
Sinorhizobium_medicae_WSM419 3 3
Sinorhizobium_meliloti_AK83 2 2
Genome_sequence_of_Rhizobium_sp._strain_IRBG74 4 4
Rhizobium_etli_CIAT_652 2 2
Rhizobium_leguminosarum_bv._viciae_3841 2 2
Agrobacterium_tumefaciens_str._C58 1 1
Agrobacterium_radiobacter_K84 4 4
Agrobacterium_sp._H13-3 3 2
Agrobacterium_vitis_S4 1 1
Mesorhizobium_sp._BNC1 8 8
Mesorhizobium_opportunistum_WSM2075 6 6
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 7 7
Mesorhizobium_loti_MAFF303099 5 5
Beijerinckia_indica_subsp._indica_ATCC_9039 2 2
Pelagibacterium_halotolerans_B2 4 4
Rhodomicrobium_vannielii_ATCC_17100 1 1
Hyphomicrobium_sp._MC1 2 2
Oligotropha_carboxidovorans_OM4 6 6
Rhodopseudomonas_palustris_BisA53 6 6
Nitrobacter_hamburgensis_X14 1 1
Bradyrhizobium_japonicum_USDA_110 22 21
Bradyrhizobium_sp._ORS_278 11 11
Cellvibrio_japonicus_Ueda107 1 1
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 1 1
Ferrimonas_balearica_DSM_9799 1 1
Shewanella_piezotolerans_WP3 1 1
Shewanella_loihica_PV-4 1 1
Shewanella_halifaxensis_HAW-EB4 1 1
Shewanella_sediminis_HAW-EB3 1 1
Shewanella_pealeana_ATCC_700345 1 1
Shewanella_amazonensis_SB2B 1 1
Colwellia_psychrerythraea_34H 4 4
Pseudoalteromonas_atlantica_T6c 3 3
Glaciecola_sp._4H-3-7+YE-5 4 4
Glaciecola_nitratireducens_FR1064 2 2
Marinobacter_adhaerens_HP15 3 3
Marinobacter_sp._BSs20148 3 2
Marinobacter_hydrocarbonoclasticus_ATCC_49840 2 2
Marinobacter_aquaeolei_VT8 1 1
Hahella_chejuensis_KCTC_2396 3 2
Alcanivorax_borkumensis_SK2 2 2
Marinomonas_posidonica_IVIA-Po-181 3 2
Marinomonas_sp._MWYL1 3 2
Marinomonas_mediterranea_MMB-1 2 1
Chromohalobacter_salexigens_DSM_3043 1 1
Halomonas_elongata_DSM_2581 2 2
Pseudoxanthomonas_spadix_BD-a59 1 1
Coxiella_burnetii_Dugway_5J108-111 1 1
Legionella_longbeachae_NSW150 1 1
Legionella_pneumophila_str._Corby 1 1
gamma_proteobacterium_HdN1 3 3
Photorhabdus_luminescens_subsp._laumondii_TTO1 1 1
Providencia_stuartii_MRSN_2154 3 3
Proteus_mirabilis_HI4320 1 1
Edwardsiella_ictaluri_93-146 3 3
Edwardsiella_tarda_EIB202 2 2
Rahnella_sp._Y9602 3 2
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 3 2
Serratia_sp._AS12 2 1
Serratia_plymuthica_AS9 2 1
Serratia_proteamaculans_568 2 1
Dickeya_dadantii_Ech703 2 2
Sodalis_glossinidius_str._'morsitans' 1 1
Pantoea_sp._At-9b 2 1
Pantoea_vagans_C9-1 2 1
Pantoea_ananatis_LMG_20103 2 1
Erwinia_billingiae_Eb661 2 1
Escherichia_blattae_DSM_4481 1 1
Enterobacteriaceae_bacterium_strain_FGI_57 1 1
Shigella_sonnei_Ss046 2 2
Shigella_flexneri_5_str._8401 3 3
Shigella_dysenteriae_Sd197 3 3
Shigella_boydii_CDC_3083-94 2 2
Salmonella_bongori_NCTC_12419 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594 1 1
Escherichia_fergusonii_ATCC_35469 1 1
Escherichia_coli_'BL21-Gold(DE3)pLysS_AG' 2 2
Citrobacter_rodentium_ICC168 1 1
Citrobacter_koseri_ATCC_BAA-895 1 1
Azotobacter_vinelandii_DJ 2 2
Pseudomonas_sp._TKP 7 6
Pseudomonas_sp._UW4 8 7
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 5 4
Pseudomonas_entomophila_L48 4 3
Pseudomonas_syringae_pv._tomato_str._DC3000 2 2
Pseudomonas_stutzeri_A1501 5 5
Pseudomonas_fulva_12-X 4 4
Pseudomonas_putida_F1 4 4
Pseudomonas_protegens_Pf-5 7 6
Pseudomonas_fluorescens_SBW25 7 6
Pseudomonas_mendocina_ymp 3 3
Pseudomonas_aeruginosa_UCBPP-PA14 5 5
Pseudomonas_sp._VLB120 3 3
Psychrobacter_sp._G 2 2
Psychrobacter_sp._PRwf-1 2 2
Psychrobacter_arcticus_273-4 2 2
Psychrobacter_cryohalolentis_K5 2 2
Acinetobacter_oleivorans_DR1 5 5
Acinetobacter_calcoaceticus_PHEA-2 5 5
Acinetobacter_baumannii_ATCC_17978 2 2
Acinetobacter_sp._ADP1 4 4
Cycloclasticus_sp._P1 3 3
Candidatus_Caldiarchaeum_subterraneum 1 1
Acidilobus_saccharovorans_345-15 1 1
Thermosphaera_aggregans_DSM_11486 1 1
Desulfurococcus_fermentans_DSM_16532 1 1
Desulfurococcus_kamchatkensis_1221n 1 1
Desulfurococcus_mucosus_DSM_2162 1 1
Sulfolobus_tokodaii_str._7 2 2
Sulfolobus_islandicus_Y.N.15.51 3 3
Sulfolobus_solfataricus_P2 2 2
Sulfolobus_acidocaldarius_DSM_639 2 2
Vulcanisaeta_moutnovskia_768-28 2 2
Vulcanisaeta_distributa_DSM_14429 2 2
Caldivirga_maquilingensis_IC-167 1 1
Pyrobaculum_sp._1860 4 4
Pyrobaculum_calidifontis_JCM_11548 2 2
Pyrobaculum_arsenaticum_DSM_13514 4 4
Pyrobaculum_oguniense_TE7 3 3
Pyrobaculum_aerophilum_str._IM2 1 1
Pyrobaculum_islandicum_DSM_4184 2 2
Thermoproteus_uzoniensis_768-20 5 5
Thermoproteus_tenax_Kra_1 5 5
halophilic_archaeon_DL31 3 3
Ferroglobus_placidus_DSM_10642 9 9
Archaeoglobus_fulgidus_DSM_4304 5 5
Thermoplasma_volcanium_GSS1 2 2
Picrophilus_torridus_DSM_9790 1 1
Salinarchaeum_sp._Harcht-Bsk1 1 1
Halopiger_xanaduensis_SH-6 3 3
Haloterrigena_turkmenica_DSM_5511 2 2
Natrinema_sp._J7-2 3 3
Natrialba_magadii_ATCC_43099 6 6
Halorubrum_lacusprofundi_ATCC_49239 3 3
Haloquadratum_walsbyi_DSM_16790 2 2
Haloferax_mediterranei_ATCC_33500 1 1
Haloferax_volcanii_DS2 2 2
Halomicrobium_mukohataei_DSM_12286 1 1
Natronomonas_pharaonis_DSM_2160 2 2
Haloarcula_hispanica_ATCC_33960 1 1
Haloarcula_marismortui_ATCC_43049 1 1
Halalkalicoccus_jeotgali_B3 5 5

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   13 13
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   2 2
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   3 3
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   6 6
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   3 3
Cryptococcus_neoformans_var._grubii_H99_ 1 1
Cryptococcus_neoformans_B-3501A_ 1 1
Cryptococcus_neoformans_JEC21_ 3 3
Paracoccidioides_brasiliensis_Pb01_ 4 4
Paracoccidioides_brasiliensis_Pb03_ 3 3
Coccidioides_posadasii_str._Silveira_ 9 6
Coccidioides_immitis_RMSCC_3703_ 6 6
Coccidioides_immitis_RMSCC_2394_ 8 6
Coccidioides_immitis_H538.4_ 8 6
Ajellomyces_dermatitidis_ER-3_ 3 3
Histoplasma_capsulatum_H143 2 2
Histoplasma_capsulatum_H88 2 2
Histoplasma_capsulatum_G186AR 3 3
Aspergillus_fumigatus_A1163_ 7 5
Candida_albicans_WO-1_ 2 1
Batrachochytrium_dendrobatidis_JEL423_ 1 1
Batrachochytrium_dendrobatidis_JAM81_ 1 1
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   3 3
Gordonibacter_pamelaeae_7-10-1-b 1 1
Adlercreutzia_equolifaciens_DSM_19450 2 2
Frankia_sp._EuI1c 63 49
Frankia_sp._CcI3 4 3
Nocardiopsis_alba_ATCC_BAA-2165 7 5
Streptomyces_albus_J1074 6 5
Streptomyces_rapamycinicus_NRRL_5491 20 17
Streptomyces_davawensis_JCM_4913 6 5
Streptomyces_fulvissimus_DSM_40593 5 4
Streptomyces_venezuelae_ATCC_10712 9 7
Streptomyces_collinus_Tu_365 5 4
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 6 6
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 7 6
Saccharothrix_espanaensis_DSM_44229 9 7
Amycolatopsis_mediterranei_RB 18 15
Amycolatopsis_mediterranei_S699 18 15
Amycolatopsis_mediterranei_S699 18 15
Amycolatopsis_orientalis_HCCB10007 12 9
Propionibacterium_acnes_ATCC_11828 1 1
Propionibacterium_acnes_TypeIA2_P.acn31 1 1
Propionibacterium_acnes_TypeIA2_P.acn17 1 1
Propionibacterium_acnes_TypeIA2_P.acn33 1 1
Propionibacterium_acnes_C1 1 1
Propionibacterium_acnes_HL096PA1 1 1
Propionibacterium_acnes_6609 1 1
Propionibacterium_acnes_266 1 1
Propionibacterium_acnes_KPA171202 1 1
Actinoplanes_friuliensis_DSM_7358 3 3
Rhodococcus_pyridinivorans_SB3094 16 14
Rhodococcus_erythropolis_CCM2595 16 15
Nocardia_brasiliensis_ATCC_700358 5 4
Mycobacterium_sp._MOTT36Y 29 23
Mycobacterium_sp._JDM601 19 15
Mycobacterium_abscessus_subsp._bolletii_50594 5 4
Mycobacterium_liflandii_128FXT 15 13
Mycobacterium_sp._KMS 17 15
Mycobacterium_sp._MCS 16 14
Mycobacterium_yongonense_05-1390 28 22
Mycobacterium_intracellulare_MOTT-64 36 29
Mycobacterium_indicus_pranii_MTCC_9506 29 23
Mycobacterium_intracellulare_MOTT-02 33 26
Mycobacterium_avium_subsp._paratuberculosis_MAP4 23 18
Mycobacterium_avium_subsp._paratuberculosis_K-10 25 20
Mycobacterium_canettii_CIPT_140070017 4 3
Mycobacterium_canettii_CIPT_140060008 5 4
Mycobacterium_canettii_CIPT_140070008 5 4
Mycobacterium_canettii_CIPT_140070010 5 4
Mycobacterium_tuberculosis_EAI5/NITR206 5 4
Mycobacterium_tuberculosis_EAI5 5 4
Mycobacterium_tuberculosis_CAS/NITR204 7 7
Mycobacterium_tuberculosis_str._Beijing/NITR203 5 4
Mycobacterium_tuberculosis_UT205 5 4
Mycobacterium_tuberculosis_RGTB423 5 4
Mycobacterium_tuberculosis_RGTB327 4 3
Mycobacterium_tuberculosis_CTRI-2 5 4
Mycobacterium_tuberculosis_str._Erdman_=_ATCC_35801 5 4
Mycobacterium_tuberculosis_KZN_605 5 4
Mycobacterium_tuberculosis_KZN_4207 5 4
Mycobacterium_tuberculosis_CCDC5180 5 4
Mycobacterium_tuberculosis_CCDC5079 5 4
Mycobacterium_tuberculosis_CCDC5079 5 4
Mycobacterium_tuberculosis_H37Ra 5 4
Mycobacterium_tuberculosis_str._Haarlem/NITR202 3 3
Mycobacterium_tuberculosis_str._Haarlem 5 4
Mycobacterium_tuberculosis_F11 5 4
Mycobacterium_tuberculosis_H37Rv 5 4
Mycobacterium_tuberculosis_CDC1551 5 4
Mycobacterium_bovis_AF2122/97 5 4
Mycobacterium_bovis_BCG_str._Korea_1168P 5 4
Mycobacterium_bovis_BCG_str._Mexico 5 4
Mycobacterium_bovis_BCG_str._Tokyo_172 5 4
Mycobacterium_gilvum_Spyr1 17 15
Mycobacterium_smegmatis_str._MC2_155 32 29
Mycobacterium_kansasii_ATCC_12478 19 16
Corynebacterium_maris_DSM_45190 1 1
Corynebacterium_halotolerans_YIM_70093_=_DSM_44683 1 1
Corynebacterium_terpenotabidum_Y-11 2 2
Corynebacterium_urealyticum_DSM_7111 2 1
Corynebacterium_argentoratense_DSM_44202 1 1
Corynebacterium_pseudotuberculosis_258 1 1
Corynebacterium_pseudotuberculosis_Cp162 1 1
Corynebacterium_pseudotuberculosis_P54B96 1 1
Corynebacterium_pseudotuberculosis_267 1 1
Corynebacterium_pseudotuberculosis_1/06-A 1 1
Corynebacterium_pseudotuberculosis_42/02-A 1 1
Corynebacterium_pseudotuberculosis_3/99-5 1 1
Corynebacterium_pseudotuberculosis_31 1 1
Corynebacterium_pseudotuberculosis_CIP_52.97 1 1
Corynebacterium_pseudotuberculosis_PAT10 1 1
Corynebacterium_pseudotuberculosis_I19 1 1
Corynebacterium_pseudotuberculosis_FRC41 1 1
Corynebacterium_pseudotuberculosis_C231 1 1
Corynebacterium_pseudotuberculosis_1002 1 1
Leifsonia_xyli_subsp._cynodontis_DSM_46306 1 1
Bifidobacterium_animalis_subsp._animalis_ATCC_25527 1 1
Bifidobacterium_animalis_subsp._lactis_Bl12 1 1
Bifidobacterium_animalis_subsp._lactis_B420 1 1
Bifidobacterium_animalis_subsp._lactis_ATCC_27673 1 1
Bifidobacterium_animalis_subsp._lactis_BLC1 1 1
Bifidobacterium_animalis_subsp._lactis_CNCM_I-2494 1 1
Bifidobacterium_animalis_subsp._lactis_Bi-07 1 1
Bifidobacterium_animalis_subsp._lactis_V9 1 1
Bifidobacterium_animalis_subsp._lactis_DSM_10140 1 1
Bifidobacterium_animalis_subsp._lactis_BB-12 1 1
Bifidobacterium_animalis_subsp._lactis_AD011 1 1
Deinococcus_peraridilitoris_DSM_19664 1 1
Thermus_oshimai_JL-2 2 2
Thermus_thermophilus_JL-18 2 2
Thermus_thermophilus_SG0.5JP17-16 1 1
Thermus_thermophilus_HB8 2 2
Faecalibacterium_prausnitzii_L2-6 2 2
Sulfobacillus_acidophilus_TPY 4 4
Desulfosporosinus_meridiei_DSM_13257 1 1
Desulfitobacterium_hafniense_DCB-2 7 7
Desulfotomaculum_gibsoniae_DSM_7213 5 5
Clostridium_difficile_BI1 3 3
Clostridium_difficile_R20291 3 3
Clostridium_difficile_CD196 3 3
Coprococcus_catus_GD/7 2 2
Clostridium_sp._SY8519 1 1
Clostridium_saccharobutylicum_DSM_13864 1 1
Clostridium_autoethanogenum_DSM_10061 1 1
Clostridium_tetani_genome_12124569 1 1
Clostridium_botulinum_H04402_065 2 2
Clostridium_botulinum_BKT015925 2 2
Clostridium_botulinum_F_str._230613 2 2
Clostridium_botulinum_F_str._Langeland 2 2
Clostridium_botulinum_B1_str._Okra 2 2
Clostridium_botulinum_Ba4_str._657 2 2
Clostridium_botulinum_A2_str._Kyoto 2 2
Clostridium_botulinum_A3_str._Loch_Maree 2 2
Clostridium_botulinum_A_str._Hall 2 2
Clostridium_botulinum_A_str._ATCC_19397 2 2
Lactobacillus_johnsonii_N6.2 1 1
Lactobacillus_johnsonii_DPC_6026 2 2
Lactobacillus_johnsonii_NCC_533 1 1
Lactobacillus_amylovorus_GRL_1112 2 2
Lactobacillus_reuteri_TD1 1 1
Lactobacillus_reuteri_I5007 1 1
Lactobacillus_reuteri_JCM_1112 1 1
Lactobacillus_helveticus_R0052 2 2
Lactobacillus_helveticus_H10 2 2
Lactobacillus_helveticus_CNRZ32 1 1
Lactobacillus_acidophilus_La-14 2 2
Lactobacillus_acidophilus_NCFM 2 2
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_Tc-4-1 1 1
Thermobacillus_composti_KWC4 1 1
Paenibacillus_mucilaginosus_KNP414 1 1
Paenibacillus_mucilaginosus_K02 1 1
Geobacillus_sp._C56-T3 3 3
Geobacillus_sp._Y4.1MC1 2 2
Geobacillus_sp._Y412MC52 3 3
Geobacillus_sp._Y412MC61 3 3
Bacillus_megaterium_WSH-002 4 3
Bacillus_megaterium_QM_B1551 3 2
Bacillus_coagulans_36D1 1 1
Salinibacter_ruber_DSM_13855 1 1
Rhodothermus_marinus_SG0.5JP17-172 1 1
Echinicola_vietnamensis_DSM_17526 2 2
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 1 1
Leptospira_interrogans_serovar_Lai_str._56601 1 1
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 1 1
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 1 1
Campylobacter_coli_15-537360 1 1
Campylobacter_coli_CVM_N29710 1 1
Desulfobacula_toluolica_Tol2 4 4
Geobacter_sp._M18 1 1
Sorangium_cellulosum_So0157-2 1 1
Anaeromyxobacter_sp._K 1 1
Anaeromyxobacter_dehalogenans_2CP-C 1 1
Myxococcus_stipitatus_DSM_14675 1 1
Burkholderia_phenoliruptrix_BR3459a 13 12
Pandoraea_pnomenusa_3kgm 13 12
Ralstonia_pickettii_12J 9 8
Ralstonia_solanacearum_FQY_4 6 5
Ralstonia_solanacearum_Po82 8 6
Ralstonia_solanacearum_PSI07 8 6
Ralstonia_solanacearum_CMR15 6 5
Ralstonia_solanacearum_GMI1000 6 5
Polynucleobacter_necessarius_subsp._necessarius_STIR1 3 3
Burkholderia_sp._YI23 39 37
Burkholderia_sp._CCGE1003 15 14
Burkholderia_sp._CCGE1001 12 11
Burkholderia_sp._KJ006 7 6
Burkholderia_thailandensis_MSMB121 13 11
Burkholderia_pseudomallei_MSHR305 11 10
Burkholderia_pseudomallei_NCTC_13179 11 10
Burkholderia_pseudomallei_BPC006 8 7
Burkholderia_pseudomallei_1026b 9 8
Burkholderia_pseudomallei_MSHR346 5 5
Burkholderia_pseudomallei_668 9 8
Burkholderia_pseudomallei_1710b 9 8
Burkholderia_pseudomallei_K96243 9 8
Burkholderia_mallei_NCTC_10229 8 7
Burkholderia_mallei_NCTC_10247 7 6
Burkholderia_mallei_ATCC_23344 6 5
Burkholderia_lata 33 31
Burkholderia_ambifaria_MC40-6 16 14
Burkholderia_cenocepacia_MC0-3 19 18
Burkholderia_cenocepacia_AU_1054 14 13
Burkholderia_cenocepacia_J2315 16 15
Burkholderia_multivorans_ATCC_17616 10 9
Burkholderia_cepacia_GG4 11 10
Alicycliphilus_denitrificans_BC 43 43
Variovorax_paradoxus_B4 28 27
Variovorax_paradoxus_EPS 16 16
Taylorella_asinigenitalis_14/45 1 1
Taylorella_equigenitalis_14/56 1 1
Taylorella_equigenitalis_ATCC_35865 1 1
Bordetella_pertussis_CS 22 21
Bordetella_parapertussis_18323 17 17
Bordetella_parapertussis_Bpp5 35 34
Bordetella_bronchiseptica_MO149 55 54
Bordetella_bronchiseptica_253 53 52
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 18 16
Caulobacter_crescentus_CB15 3 3
Phaeobacter_gallaeciensis_DSM_17395 6 5
Phaeobacter_gallaeciensis_DSM_26640 6 5
Leisingera_methylohalidivorans_DSM_14336 9 7
Octadecabacter_antarcticus_307 4 4
Octadecabacter_arcticus_238 4 4
Rhodobacter_sphaeroides_KD131 4 4
Rhodobacter_sphaeroides_ATCC_17025 2 2
Rhodobacter_sphaeroides_2.4.1 2 2
Paracoccus_aminophilus_JCM_7686 4 4
Magnetospirillum_gryphiswaldense_MSR-1_v2 4 3
Rhodospirillum_rubrum_ATCC_11170 3 3
Gluconacetobacter_diazotrophicus_PAl_5 1 1
Acetobacter_pasteurianus_386B 2 2
Acetobacter_pasteurianus_IFO_3283-12 2 2
Acetobacter_pasteurianus_IFO_3283-01-42C 2 2
Acetobacter_pasteurianus_IFO_3283-32 2 2
Acetobacter_pasteurianus_IFO_3283-26 2 2
Acetobacter_pasteurianus_IFO_3283-22 2 2
Acetobacter_pasteurianus_IFO_3283-07 2 2
Acetobacter_pasteurianus_IFO_3283-03 2 2
Micavibrio_aeruginosavorus_EPB 1 1
Methylobacterium_extorquens_DM4 4 4
Methylobacterium_extorquens_PA1 3 3
Brucella_ceti_TE10759-12 2 2
Brucella_ceti_TE28753-12 4 4
Brucella_canis_HSK_A52141 6 6
Brucella_suis_VBI22 4 4
Brucella_suis_1330 4 4
Brucella_suis_1330 4 4
Brucella_melitensis_NI 4 4
Brucella_melitensis_M5-90 4 4
Brucella_melitensis_M28 4 4
Brucella_melitensis_bv._1_str._16M 4 4
Brucella_abortus_A13334 4 4
Brucella_melitensis_biovar_Abortus_2308 2 2
Brucella_abortus_bv._1_str._9-941 3 3
Sinorhizobium_fredii_USDA_257 1 1
Sinorhizobium_fredii_HH103 2 2
Sinorhizobium_meliloti_2011 2 2
Sinorhizobium_meliloti_GR4 2 2
Sinorhizobium_meliloti_Rm41 2 2
Sinorhizobium_meliloti_SM11 2 2
Sinorhizobium_meliloti_BL225C 3 3
Sinorhizobium_meliloti_1021 2 2
Rhizobium_etli_CFN_42 1 1
Rhizobium_etli_bv._mimosae_str._Mim1 1 1
Rhizobium_tropici_CIAT_899 4 3
Rhizobium_leguminosarum_bv._trifolii_WSM2304 4 3
Rhizobium_leguminosarum_bv._trifolii_WSM1325 1 1
Mesorhizobium_australicum_WSM2073 5 5
Oligotropha_carboxidovorans_OM5 7 7
Oligotropha_carboxidovorans_OM5 7 7
Rhodopseudomonas_palustris_DX-1 12 11
Rhodopseudomonas_palustris_TIE-1 14 13
Rhodopseudomonas_palustris_HaA2 12 10
Rhodopseudomonas_palustris_BisB5 11 9
Rhodopseudomonas_palustris_BisB18 5 5
Rhodopseudomonas_palustris_CGA009 12 11
Bradyrhizobium_sp._S23321 18 17
Bradyrhizobium_sp._BTAi1 13 13
Bradyrhizobium_oligotrophicum_S58 15 15
Bradyrhizobium_japonicum_USDA_6 22 20
Simiduia_agarivorans_SA1_=_DSM_21679 5 5
Aeromonas_hydrophila_ML09-119 1 1
Vibrio_nigripulchritudo_VibrioScope 4 4
Glaciecola_psychrophila_170 3 2
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 1 1
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 1 1
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 1 1
Alteromonas_macleodii_AltDE1 1 1
Alcanivorax_dieselolei_B5 12 12
Thalassolituus_oleivorans_MIL-1 1 1
Coxiella_burnetii_CbuK_Q154 1 1
Coxiella_burnetii_CbuG_Q212 1 1
Coxiella_burnetii_RSA_331 1 1
Coxiella_burnetii_RSA_493 1 1
Legionella_pneumophila_str._Paris 1 1
Legionella_pneumophila_str._Lens 1 1
Legionella_pneumophila_subsp._pneumophila_LPE509 1 1
Legionella_pneumophila_subsp._pneumophila_str._Thunder_Bay 1 1
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 1 1
Legionella_pneumophila_subsp._pneumophila 1 1
Legionella_pneumophila_subsp._pneumophila 1 1
Legionella_pneumophila_subsp._pneumophila_ATCC_43290 1 1
Legionella_pneumophila_2300/99_Alcoy 1 1
Proteus_mirabilis_BB2000 2 2
Edwardsiella_tarda_C07-087 2 2
Edwardsiella_tarda_FL6-60 3 3
Rahnella_aquatilis_HX2 3 2
Serratia_sp._AS13 2 1
Serratia_plymuthica_S13 3 2
Serratia_plymuthica_4Rx13 2 1
Serratia_marcescens_WW4 2 1
Serratia_liquefaciens_ATCC_27592 2 1
Dickeya_dadantii_3937 2 2
Pantoea_ananatis_LMG_5342 2 1
Pantoea_ananatis_PA13 2 1
Pantoea_ananatis_AJ13355 2 1
Raoultella_ornithinolytica_B6 2 1
Shigella_sonnei_53G 4 4
Shigella_flexneri_2002017 3 3
Shigella_flexneri_2a_str._2457T 3 3
Shigella_flexneri_2a_str._301 3 3
Shigella_dysenteriae_1617 3 3
Shigella_boydii_Sb227 2 2
Salmonella_bongori_N268-08 1 1
Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 2 2
Salmonella_enterica_subsp._enterica_serovar_4,[5],12:i:-_str._08-1736 1 1
Salmonella_enterica_subsp._enterica_serovar_Javiana_str._CFSAN001992 1 1
Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 1 1
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 1 1
Salmonella_enterica_subsp._enterica_serovar_Enteritidis_str._P125109 1 1
Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 1 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._USMARC-S3124.1 1 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL254 1 1
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_var._5-_str._CFSAN001921 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._UK-1 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 1 1
Salmonella_enterica_The_genome_of__subsp._enterica_serovar_Typhimurium_str._DT2 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._P-stx-12 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty21a 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2 1 1
Salmonella_enterica_serovar_Bovismorbificans_genomics 2 2
Salmonella_enterica_subsp._enterica_serovar_Bareilly_str._CFSAN000189 1 1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._24249 1 1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._SL483 1 1
Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._2007-60-3289-1 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_B_str._SPB7 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._AKU_12601 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._ATCC_9150 1 1
Salmonella_enterica_subsp._enterica_Serovar_Heidelberg_str._CFSAN002069 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._B182 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._SL476 1 1
Salmonella_enterica_subsp._enterica_serovar_Pullorum_str._S06004 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._CDC1983-67 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._RKS5078 1 1
Salmonella_enterica_subsp._enterica_serovar_Thompson_str._RM6836 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum_str._287/91 1 1
Enterobacter_aerogenes_EA1509E 2 1
Escherichia_coli_E24377A 3 3
Escherichia_coli_E._coli_PMV-1 3 3
Escherichia_coli_JJ1886 3 3
Escherichia_coli_LY180 3 3
Escherichia_coli_APEC_O78 3 3
Escherichia_coli_O7:K1_str._CE10 3 3
Escherichia_coli_O104:H4_str._2009EL-2050 3 3
Escherichia_coli_O104:H4_str._2009EL-2071 3 3
Escherichia_coli_O104:H4_str._2011C-3493 3 3
Escherichia_coli_NA114 3 3
Escherichia_coli_P12b 3 3
Escherichia_coli_str._'clone_D_i2' 3 3
Escherichia_coli_str._'clone_D_i14' 3 3
Escherichia_coli_UM146 3 3
Escherichia_coli_042 2 2
Escherichia_coli_Xuzhou21 4 4
Escherichia_coli_IHE3034 3 3
Escherichia_coli_UMNK88 3 3
Escherichia_coli_O83:H1_str._NRG_857C 3 3
Escherichia_coli_ABU_83972 3 3
Escherichia_coli_KO11FL 3 3
Escherichia_coli_KO11FL 3 3
Escherichia_coli_LF82 3 3
Escherichia_coli_ED1a 3 3
Escherichia_coli_IAI39 3 3
Escherichia_coli_UMN026 3 3
Escherichia_coli_55989 3 3
Escherichia_coli_S88 3 3
Escherichia_coli_IAI1 3 3
Escherichia_coli_W 3 3
Escherichia_coli_W 3 3
Escherichia_coli_DH1 3 3
Escherichia_coli_DH1 3 3
Escherichia_coli_ATCC_8739 3 3
Escherichia_coli_BL21(DE3) 2 2
Escherichia_coli_BL21(DE3) 2 2
Escherichia_coli_SMS-3-5 3 3
Escherichia_coli_SE15 3 3
Escherichia_coli_SE11 3 3
Escherichia_coli_APEC_O1 3 3
Escherichia_coli_O103:H2_str._12009 3 3
Escherichia_coli_UTI89 3 3
Escherichia_coli_536 3 3
Escherichia_coli_HS 3 3
Escherichia_coli_ETEC_H10407 3 3
Escherichia_coli_O55:H7_str._RM12579 3 3
Escherichia_coli_O55:H7_str._CB9615 3 3
Escherichia_coli_O26:H11_str._11368 3 3
Escherichia_coli_CFT073 3 3
Escherichia_coli_O111:H-_str._11128 3 3
Escherichia_coli_O127:H6_str._E2348/69 3 3
Escherichia_coli_O157:H7_str._TW14359 2 2
Escherichia_coli_O157:H7_str._EC4115 2 2
Escherichia_coli_O157:H7_str._Sakai 4 4
Escherichia_coli_O157:H7_str._EDL933 3 3
Escherichia_coli_str._K-12_substr._MDS42 3 3
Escherichia_coli_BW2952 3 3
Escherichia_coli_str._K-12_substr._MG1655 3 3
Escherichia_coli_str._K-12_substr._W3110 3 3
Escherichia_coli_str._K-12_substr._DH10B 3 3
Escherichia_coli_B_str._REL606 2 2
Enterobacter_cloacae_SCF1 3 2
Azotobacter_vinelandii_CA6 2 2
Azotobacter_vinelandii_CA 2 2
Pseudomonas_denitrificans_ATCC_13867 7 7
Pseudomonas_syringae_pv._phaseolicola_1448A 2 2
Pseudomonas_syringae_pv._syringae_B728a 3 3
Pseudomonas_stutzeri_CCUG_29243 4 4
Pseudomonas_stutzeri_DSM_10701 3 3
Pseudomonas_stutzeri_DSM_4166 4 4
Pseudomonas_stutzeri_RCH2 4 4
Pseudomonas_stutzeri_ATCC_17588_=_LMG_11199 4 4
Pseudomonas_monteilii_SB3101 3 3
Pseudomonas_monteilii_SB3078 3 3
Pseudomonas_putida_H8234 5 5
Pseudomonas_putida_HB3267 3 3
Pseudomonas_putida_NBRC_14164 5 5
Pseudomonas_putida_DOT-T1E 5 5
Pseudomonas_putida_S16 2 2
Pseudomonas_putida_BIRD-1 3 3
Pseudomonas_putida_W619 5 5
Pseudomonas_putida_ND6 4 4
Pseudomonas_putida_KT2440 4 4
Pseudomonas_putida_GB-1 2 2
Pseudomonas_protegens_CHA0 7 6
Pseudomonas_poae_RE*1-1-14 4 3
Pseudomonas_fluorescens_F113 7 5
Pseudomonas_fluorescens_A506 6 5
Pseudomonas_fluorescens_R124 5 4
Pseudomonas_fluorescens_Pf0-1 6 5
Pseudomonas_resinovorans_NBRC_106553 6 6
Pseudomonas_mendocina_NK-01 5 5
Pseudomonas_aeruginosa_SCV20265 5 5
Pseudomonas_aeruginosa_MTB-1 5 5
Pseudomonas_aeruginosa_LES431 5 5
Pseudomonas_aeruginosa_RP73 5 5
Pseudomonas_aeruginosa_B136-33 5 5
Pseudomonas_aeruginosa_PA1R 5 5
Pseudomonas_aeruginosa_PA1 5 5
Pseudomonas_aeruginosa_DK2 5 5
Pseudomonas_aeruginosa_NCGM2.S1 5 5
Pseudomonas_aeruginosa_M18 5 5
Pseudomonas_aeruginosa_LESB58 5 5
Pseudomonas_aeruginosa_PA7 5 5
Pseudomonas_aeruginosa_PAO1 5 5
Acinetobacter_genomosp._13TU__RUH2624 3 3
Acinetobacter_sp.__SH024 3 3
Acinetobacter_calcoaceticus_ruh2202 3 3
Acinetobacter_baumannii_ZW85-1 3 3
Acinetobacter_baumannii_TYTH-1 3 3
Acinetobacter_baumannii_BJAB0868 3 3
Acinetobacter_baumannii_BJAB0715 4 4
Acinetobacter_baumannii_BJAB07104 3 3
Acinetobacter_baumannii_TCDC-AB0715 3 3
Acinetobacter_baumannii_D1279779 2 2
Acinetobacter_baumannii_MDR-TJ 3 3
Acinetobacter_baumannii_1656-2 3 3
Acinetobacter_baumannii__ATCC_19606 4 4
Acinetobacter_baumannii_AB307-0294 4 4
Acinetobacter_baumannii_AYE 4 4
Acinetobacter_baumannii_SDF 2 2
Acinetobacter_baumannii_MDR-ZJ06 3 3
Acinetobacter_baumannii_AB0057 4 4
Acinetobacter_baumannii_ACICU 3 3
Acinetobacter_radioresistens__SH164 5 5
Acinetobacter_junii__SH205 1 1
Acinetobacter_johnsonii__SH046 1 1
Acinetobacter_lwoffii__SH145 2 2
Cycloclasticus_zancles_7-ME 3 3
Caldisphaera_lagunensis_DSM_15908 2 2
Sulfolobus_islandicus_LAL14/1 2 2
Sulfolobus_islandicus_REY15A 2 2
Sulfolobus_islandicus_HVE10/4 2 2
Sulfolobus_islandicus_Y.G.57.14 3 3
Sulfolobus_islandicus_L.S.2.15 3 3
Sulfolobus_islandicus_M.16.27 5 5
Sulfolobus_islandicus_M.14.25 2 2
Sulfolobus_islandicus_M.16.4 2 2
Sulfolobus_islandicus_L.D.8.5 3 3
Sulfolobus_solfataricus_98/2 1 1
Sulfolobus_acidocaldarius_SUSAZ 2 2
Sulfolobus_acidocaldarius_Ron12/I 2 2
Sulfolobus_acidocaldarius_N8 2 2
Archaeoglobus_sulfaticallidus_PM70-1 3 3
Ferroplasma_acidarmanus_fer1 2 2
Halovivax_ruber_XH-70 1 1
Natrinema_pellirubrum_DSM_15624 3 3
Natronococcus_occultus_SP4 3 3
Natronobacterium_gregoryi_SP2 1 1
Haloquadratum_walsbyi_C23 1 1
Natronomonas_moolapensis_8.8.11 1 1
Haloarcula_hispanica_N601 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   2 2
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1 1
Gorilla_gorilla_69_3.1   (Western gorilla)   2 2
Pongo_abelii_69_2   (Sumatran orangutan)   2 2
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   2 2
Macaca_mulatta_69_1   (Rhesus monkey)   2 2
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   3 3
Otolemur_garnettii_69_3   (Small-eared galago)   1 1
Microcebus_murinus_69_1   (Gray mouse lemur)   2 2
Rattus_norvegicus_69_3.4   (Norway rat)   4 3
Mus_musculus_69_38   (House mouse)   2 2
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   3 2
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   2 2
Cavia_porcellus_69_3   (Domestic guinea pig)   2 2
Oryctolagus_cuniculus_69_2   (Rabbit)   2 2
Ochotona_princeps_69   (American pika)   3 2
Tupaia_belangeri_69   (Northern tree shrew)   4 2
Sus_scrofa_69_10.2   (Pig)   3 3
Bos_taurus_69_3.1   (Cattle)   2 2
Vicugna_pacos_69_1   (Alpaca)   2 2
Tursiops_truncatus_69_1   (Bottlenose dolphin)   2 2
Mustela_putorius_furo_69_1.0   (Domestic ferret)   2 2
Ailuropoda_melanoleuca_69_1   (Giant panda)   3 3
Canis_familiaris_69_3.1   (Dog)   2 2
Felis_catus_69   (Domestic cat)   3 2
Equus_caballus_69_2   (Horse)   1 1
Myotis_lucifugus_69_2.0   (Little brown bat)   3 3
Pteropus_vampyrus_69_1   (Large flying fox)   3 2
Sorex_araneus_69_1   (European shrew)   2 2
Erinaceus_europaeus_69   (Western European hedgehog)   3 2
Procavia_capensis_69_1   (Cape rock hyrax)   4 2
Loxodonta_africana_69_3   (African savanna elephant)   2 2
Echinops_telfairi_69   (Small Madagascar hedgehog)   3 2
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   3 2
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   3 2
Macropus_eugenii_69_1.0   (Tammar wallaby)   2 1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   2 2
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   2 2
Ornithorhynchus_anatinus_69_5   (Platypus)   3 3
Petromyzon_marinus_69_7.0   (Sea lamprey)   3 3
Meleagris_gallopavo_69_2   (Turkey)   2 2
Gallus_gallus_69_2   (Chicken)   2 2
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   3 3
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   2 2
Anolis_carolinensis_69_2.0   (Green anole)   1 1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   2 2
Latimeria_chalumnae_69_1   (Coelacanth)   1 1
Gadus_morhua_69_1   (Atlantic cod)   3 2
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   2 2
Takifugu_rubripes_69_4   (Torafugu)   1 1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   3 3
Oryzias_latipes_69_1   (Japanese medaka)   3 2
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   2 2
Oreochromis_niloticus_69_1.0   (Nile tilapia)   2 2
Danio_rerio_69_9   (Zebrafish)   4 4
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   2 2
Ciona_intestinalis_69   (Vase tunicate)   2 2
Drosophila_melanogaster_69_5   (Fruit fly)   2 2
Caenorhabditis_elegans_69_215   (Roundworm)   3 3

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   15 15
Homo_sapiens__(NCBI_version)   (Human)   7 7
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   2 2
Heliconius_numata__(Incomplete) 4 4
Moniliophthora_perniciosa_FA553__(Genome_survey) 6 5
Ricinus_communis__(Early_assembly)   (Castor bean)   4 4
Mycobacterium_tuberculosis_H37Rv_(Duplicate_of_ex) 5 4
NCBI_plasmid_sequences_(Plasmids) 246 230
PDB_chains_(SCOP_1.75)_(PDB) 12 12
STRING_v9.0.5_(STRING) 2668 2453
Uniprot_2018_03_genome 72761 65425
TargetDB__(Targets) 49 49
NCBI_2017_08_genome 222834 202631
Protein_Data_Bank_(all_PDB_sequenc) 96 96
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 374 374

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