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Domain combinations for Neurotransmitter-gated ion-channel transmembrane pore superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Neurotransmitter-gated ion-channel transmembrane pore domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   129 129
Pan_troglodytes_76_2.1.4   (Chimpanzee)   45 45
Gorilla_gorilla_76_3.1   (Western gorilla)   57 57
Pongo_abelii_76_2   (Sumatran orangutan)   48 48
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   50 50
Papio_anubis_76   (Olive baboon)   47 47
Macaca_mulatta_76_1   (Rhesus monkey)   66 65
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   103 103
Otolemur_garnettii_76_3   (Small-eared galago)   47 47
Microcebus_murinus_76_1   (Gray mouse lemur)   51 45
Rattus_norvegicus_76_5.0   (Norway rat)   47 47
Mus_musculus_76_38   (House mouse)   60 60
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   46 42
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   44 44
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   49 49
Cavia_porcellus_76_3   (Domestic guinea pig)   44 44
Oryctolagus_cuniculus_76_2   (Rabbit)   47 47
Ochotona_princeps_76   (American pika)   45 40
Tupaia_belangeri_76   (Northern tree shrew)   40 35
Sus_scrofa_76_10.2   (Pig)   49 49
Bos_taurus_76_3.1   (Cattle)   52 52
Ovis_aries_76_3.1   (Sheep)   52 52
Vicugna_pacos_76_1   (Alpaca)   35 33
Tursiops_truncatus_76_1   (Bottlenose dolphin)   48 46
Mustela_putorius_furo_76_1.0   (Domestic ferret)   46 46
Ailuropoda_melanoleuca_76_1   (Giant panda)   50 50
Canis_familiaris_76_3.1   (Dog)   58 58
Felis_catus_76_6.2   (Domestic cat)   47 47
Equus_caballus_76_2   (Horse)   45 45
Myotis_lucifugus_76_2.0   (Little brown bat)   45 45
Pteropus_vampyrus_76_1   (Large flying fox)   44 44
Sorex_araneus_76_1   (European shrew)   38 30
Erinaceus_europaeus_76   (Western European hedgehog)   41 37
Procavia_capensis_76_1   (Cape rock hyrax)   43 40
Loxodonta_africana_76_3   (African savanna elephant)   58 58
Echinops_telfairi_76   (Small Madagascar hedgehog)   46 40
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   50 50
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   28 27
Macropus_eugenii_76_1.0   (Tammar wallaby)   44 43
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   51 51
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   47 47
Ornithorhynchus_anatinus_76_5   (Platypus)   44 43
Saccoglossus_kowalevskii_v3.0 143 143
Petromyzon_marinus_76_7.0   (Sea lamprey)   25 25
Meleagris_gallopavo_76_2   (Turkey)   48 48
Gallus_gallus_76_4   (Chicken)   44 44
Anas_platyrhynchos_76_1.0   (Mallard)   41 41
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   43 43
Ficedula_albicollis_76_1.0   (Collared flycatcher)   44 43
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   57 57
Anolis_carolinensis_76_2.0   (Green anole)   42 42
Xenopus_laevis_   (African clawed frog)   33 33
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   53 53
Latimeria_chalumnae_76_1   (Coelacanth)   53 53
Lepisosteus_oculatus_76   (Spotted gar)   61 60
Gadus_morhua_76_1   (Atlantic cod)   76 72
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   103 102
Takifugu_rubripes_76_4   (Torafugu)   396 390
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   105 105
Oryzias_latipes_76_1   (Japanese medaka)   90 90
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   72 72
Poecilia_formosa_76   (Amazon molly)   76 74
Oreochromis_niloticus_76_1.0   (Nile tilapia)   102 102
Astyanax_mexicanus_76   (Mexican tetra)   67 66
Danio_rerio_76_9   (Zebrafish)   113 113
Oikopleura_dioica 35 35
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   39 39
Ciona_intestinalis_76   (Vase tunicate)   20 20
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   76 69
Adineta_vaga 119 116
Octopus_bimaculoides_280 80 80
Crassostrea_gigas_22   (Pacific oyster)   162 148
Lottia_gigantea_   (Owl limpet)   80 80
Helobdella_robusta_ 78 78
Capitella_sp._I_ 133 132
Danaus_plexippus_OGS1.0   (Monarch butterfly)   25 24
Heliconius_melpomene_   (Postman butterfly)   21 19
Bombyx_mori_   (Domestic silkworm)   18 18
Nasonia_vitripennis_   (Jewel wasp)   21 21
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   67 67
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   24 24
Linepithema_humile_v1.1   (Argentine ant)   29 29
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   24 24
Solenopsis_invicta_v.2.2.3   (Red fire ant)   22 22
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   21 21
Atta_cephalotes_v1.1 31 29
Camponotus_floridanus_v3.3   (Florida carpenter ant)   23 22
Lucilia_cuprina   (Australian sheep blowfly)   21 21
Drosophila_grimshawi_1.3 23 22
Drosophila_willistoni_1.3 23 22
Drosophila_pseudoobscura_2.13 24 23
Drosophila_persimilis_1.3 24 23
Drosophila_suzukii 20 18
Drosophila_yakuba_1.3 24 23
Drosophila_simulans_1.3 22 21
Drosophila_sechellia_1.3 24 23
Drosophila_melanogaster_76_5   (Fruit fly)   60 59
Drosophila_erecta_1.3 23 22
Drosophila_ananassae_1.3 22 21
Drosophila_virilis_1.2 23 22
Drosophila_mojavensis_1.3 23 22
Megaselia_scalaris_22 13 13
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   24 24
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   28 28
Anopheles_darlingi_22   (American malaria mosquito)   15 15
Anopheles_gambiae_49_3j   (African malaria mosquito)   26 26
Tribolium_castaneum_3.0   (Red flour beetle)   28 28
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   20 19
Acyrthosiphon_pisum_   (Pea aphid)   22 21
Rhodnius_prolixus_22 25 24
Daphnia_pulex_   (Common water flea)   29 28
Strigamia_maritima_22 67 60
Sarcoptes_scabiei 23 23
Tetranychus_urticae_   (Two-spotted spider mite)   33 33
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   41 37
Pristionchus_pacificus_ 134 134
Meloidogyne_incognita_   (Southern root-knot nematode)   53 52
Meloidogyne_hapla_ 24 24
Onchocerca_volvulus_22 49 47
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   71 63
Caenorhabditis_japonica_ 84 80
Caenorhabditis_brenneri_ 117 113
Caenorhabditis_remanei_ 111 107
Caenorhabditis_elegans_76_235   (Roundworm)   127 127
Caenorhabditis_briggsae_2 96 93
Trichinella_spiralis_22 32 27
Hymenolepis_microstoma_ 15 13
Echinococcus_multilocularis_ 17 17
Echinococcus_granulosus_ 18 18
Taenia_solium_   (Pork tapeworm)   18 18
Schistosoma_mansoni_ 20 20
Acropora_digitifera_v1.0 57 56
Nematostella_vectensis_1.0   (Starlet sea anemone)   111 111
Hydra_vulgaris 27 26
Monosiga_brevicollis_ 3 3
Sphaeroforma_arctica_JP610_ 1 1
Capsaspora_owczarzaki_ATCC_30864_ 1 1
Apiospora_montagnei_NRRL_25634_v1.0 1 1
Arthroderma_benhamiae_CBS_112371_ 1 1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   1 1
Oryza_sativa_v193   (Rice)   1 1
Chlorella_variabilis_sp._NC64A_ 4 4
Volvox_carteri_f._nagariensis_ 3 2
Volvox_carteri_v199 1 1
Chlamydomonas_reinhardtii_4.0 3 3
Micromonas_sp._RCC299_ 2 2
Porphyridium_purpureum_02_2012 2 2
Bigelowiella_natans_CCMP2755_22 9 9
Cyanophora_paradoxa_ 4 4
Trypanosoma_brucei_TREU927_v4.1 1 1
Aureococcus_anophagefferens_ 12 12
Pythium_iwayamai_DAOM_BR242034_22 2 2
Pythium_arrhenomanes_ATCC_12531_22 3 3
Pythium_ultimum_v1.7-2 5 5
Pythium_aphanidermatum_DAOM_BR444_22 4 4
Pythium_irregulare_DAOM_BR486_22 4 4
Phytophthora_ramorum_1.1   (Sudden oak death agent)   2 2
Phytophthora_sojae_1.1 2 2
Phytophthora_infestans_T30-4_ 2 2
Phytophthora_capsici_ 3 3
Fragilariopsis_cylindrus 4 4
Symbiodinium_minutum_clade_B1_v1.2 17 17
Guillardia_theta_CCMP2712_v1.0_ 1 1
Emiliania_huxleyi_CCMP1516_ 39 39
Synechococcus_sp._PCC_6312 1 1
Synechococcus_sp._CC9311 1 1
Cyanothece_sp._PCC_8802 1 1
Gloeobacter_violaceus_PCC_7421 1 1
Nostoc_punctiforme_PCC_73102 1 1
Haliscomenobacter_hydrossis_DSM_1100 1 1
Planctomyces_brasiliensis_DSM_5305 1 1
Coraliomargarita_akajimensis_DSM_45221 1 1
Thermotoga_thermarum_DSM_5069 1 1
Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586 1 1
Magnetospirillum_magneticum_AMB-1 1 1
Azospirillum_brasilense_Sp245 1 1
Nitrosococcus_watsonii_C-113 1 1
Dickeya_dadantii_Ech703 1 1
Dickeya_zeae_Ech1591 1 1
Francisella_sp._TX077308 1 1
Francisella_philomiragia_subsp._philomiragia_ATCC_25017 1 1
Francisella_tularensis_subsp._tularensis_WY96-3418 1 1
Francisella_cf._novicida_3523 1 1
Francisella_novicida_U112 1 1
Methanoregula_boonei_6A8 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   58 56
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   48 47
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   30 30
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   83 83
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   116 114
Chroococcidiopsis_thermalis_PCC_7203 1 1
Crinalium_epipsammum_PCC_9333 1 1
Oscillatoria_nigro-viridis_PCC_7112 1 1
Cyanothece_sp._PCC_7425 1 1
Cyanothece_sp._ATCC_51142 1 1
Cyanothece_sp._PCC_8801 1 1
Saccharothrix_espanaensis_DSM_44229 1 1
Vibrio_nigripulchritudo_VibrioScope 1 1
Dickeya_dadantii_Ech586 1 1
Dickeya_dadantii_3937 1 1
Francisella_tularensis_subsp._mediasiatica_FSC147 1 1
Francisella_tularensis_subsp._tularensis_TIGB03 1 1
Francisella_tularensis_subsp._tularensis_TI0902 1 1
Francisella_tularensis_subsp._tularensis_NE061598 1 1
Francisella_tularensis_subsp._tularensis_FSC198 1 1
Francisella_tularensis_subsp._tularensis_SCHU_S4 1 1
Francisella_cf._novicida_Fx1 1 1
Candidatus_Nitrososphaera_gargensis_Ga9.2 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   48 48
Pan_troglodytes_69_2.1.4   (Chimpanzee)   43 43
Gorilla_gorilla_69_3.1   (Western gorilla)   43 43
Pongo_abelii_69_2   (Sumatran orangutan)   46 46
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   44 44
Macaca_mulatta_69_1   (Rhesus monkey)   47 46
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   48 48
Otolemur_garnettii_69_3   (Small-eared galago)   44 44
Microcebus_murinus_69_1   (Gray mouse lemur)   51 45
Rattus_norvegicus_69_3.4   (Norway rat)   42 42
Mus_musculus_69_38   (House mouse)   43 43
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   46 42
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   44 44
Cavia_porcellus_69_3   (Domestic guinea pig)   42 42
Oryctolagus_cuniculus_69_2   (Rabbit)   43 43
Ochotona_princeps_69   (American pika)   45 40
Tupaia_belangeri_69   (Northern tree shrew)   40 35
Sus_scrofa_69_10.2   (Pig)   45 45
Bos_taurus_69_3.1   (Cattle)   45 45
Vicugna_pacos_69_1   (Alpaca)   35 33
Tursiops_truncatus_69_1   (Bottlenose dolphin)   48 46
Mustela_putorius_furo_69_1.0   (Domestic ferret)   45 45
Ailuropoda_melanoleuca_69_1   (Giant panda)   45 45
Canis_familiaris_69_3.1   (Dog)   45 45
Felis_catus_69   (Domestic cat)   40 35
Equus_caballus_69_2   (Horse)   44 44
Myotis_lucifugus_69_2.0   (Little brown bat)   42 42
Pteropus_vampyrus_69_1   (Large flying fox)   44 44
Sorex_araneus_69_1   (European shrew)   38 30
Erinaceus_europaeus_69   (Western European hedgehog)   41 37
Procavia_capensis_69_1   (Cape rock hyrax)   43 40
Loxodonta_africana_69_3   (African savanna elephant)   46 46
Echinops_telfairi_69   (Small Madagascar hedgehog)   46 40
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   41 40
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   28 27
Macropus_eugenii_69_1.0   (Tammar wallaby)   44 43
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   41 41
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   45 45
Ornithorhynchus_anatinus_69_5   (Platypus)   40 39
Petromyzon_marinus_69_7.0   (Sea lamprey)   24 24
Meleagris_gallopavo_69_2   (Turkey)   41 41
Gallus_gallus_69_2   (Chicken)   41 41
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   43 43
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   45 45
Anolis_carolinensis_69_2.0   (Green anole)   41 41
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   48 48
Latimeria_chalumnae_69_1   (Coelacanth)   46 46
Gadus_morhua_69_1   (Atlantic cod)   71 67
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   71 70
Takifugu_rubripes_69_4   (Torafugu)   73 67
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   71 71
Oryzias_latipes_69_1   (Japanese medaka)   67 67
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   71 71
Oreochromis_niloticus_69_1.0   (Nile tilapia)   75 75
Danio_rerio_69_9   (Zebrafish)   76 76
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   11 11
Ciona_intestinalis_69   (Vase tunicate)   19 19
Drosophila_melanogaster_69_5   (Fruit fly)   24 23
Caenorhabditis_elegans_69_215   (Roundworm)   92 90

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   129 129
Homo_sapiens__(NCBI_version)   (Human)   80 80
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   42 42
Loa_loa_v3.3_(Request)   (Eye worm)   48 47
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   47 46
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   26 26
Phoenix_dactylifera__(Early_draft)   (Date palm)   1 1
NCBI_plasmid_sequences_(Plasmids) 1 1
STRING_v9.0.5_(STRING) 2703 2645
Uniprot_2018_03_genome 23543 22910
NCBI_2017_08_genome 28088 27827
TargetDB__(Targets) 70 68
PDB_chains_(SCOP_1.75)_(PDB) 8 8
Protein_Data_Bank_(all_PDB_sequenc) 993 993
Protozoadb_2010_08_(Protozoadb) 1 1
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 1147 1147

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