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Domain combinations for Somatomedin B domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Somatomedin B domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   36 23
Pan_troglodytes_76_2.1.4   (Chimpanzee)   10 6
Gorilla_gorilla_76_3.1   (Western gorilla)   14 9
Pongo_abelii_76_2   (Sumatran orangutan)   14 9
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   14 9
Papio_anubis_76   (Olive baboon)   16 10
Macaca_mulatta_76_1   (Rhesus monkey)   18 11
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   23 14
Otolemur_garnettii_76_3   (Small-eared galago)   16 10
Microcebus_murinus_76_1   (Gray mouse lemur)   9 7
Rattus_norvegicus_76_5.0   (Norway rat)   11 7
Mus_musculus_76_38   (House mouse)   35 21
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   10 7
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   12 8
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   11 7
Cavia_porcellus_76_3   (Domestic guinea pig)   11 7
Oryctolagus_cuniculus_76_2   (Rabbit)   12 8
Ochotona_princeps_76   (American pika)   11 7
Tupaia_belangeri_76   (Northern tree shrew)   7 6
Sus_scrofa_76_10.2   (Pig)   15 11
Bos_taurus_76_3.1   (Cattle)   15 9
Ovis_aries_76_3.1   (Sheep)   16 9
Vicugna_pacos_76_1   (Alpaca)   6 3
Tursiops_truncatus_76_1   (Bottlenose dolphin)   11 7
Mustela_putorius_furo_76_1.0   (Domestic ferret)   13 8
Ailuropoda_melanoleuca_76_1   (Giant panda)   17 10
Canis_familiaris_76_3.1   (Dog)   15 9
Felis_catus_76_6.2   (Domestic cat)   15 9
Equus_caballus_76_2   (Horse)   22 12
Myotis_lucifugus_76_2.0   (Little brown bat)   10 6
Pteropus_vampyrus_76_1   (Large flying fox)   10 7
Sorex_araneus_76_1   (European shrew)   6 4
Erinaceus_europaeus_76   (Western European hedgehog)   8 6
Procavia_capensis_76_1   (Cape rock hyrax)   6 5
Loxodonta_africana_76_3   (African savanna elephant)   17 10
Echinops_telfairi_76   (Small Madagascar hedgehog)   5 5
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   14 9
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   7 6
Macropus_eugenii_76_1.0   (Tammar wallaby)   8 6
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   12 8
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   12 8
Ornithorhynchus_anatinus_76_5   (Platypus)   6 4
Saccoglossus_kowalevskii_v3.0 24 12
Petromyzon_marinus_76_7.0   (Sea lamprey)   3 2
Meleagris_gallopavo_76_2   (Turkey)   11 7
Gallus_gallus_76_4   (Chicken)   16 10
Anas_platyrhynchos_76_1.0   (Mallard)   13 9
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   10 6
Ficedula_albicollis_76_1.0   (Collared flycatcher)   9 6
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   13 8
Anolis_carolinensis_76_2.0   (Green anole)   12 8
Xenopus_laevis_   (African clawed frog)   20 12
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   20 12
Latimeria_chalumnae_76_1   (Coelacanth)   16 12
Lepisosteus_oculatus_76   (Spotted gar)   13 9
Gadus_morhua_76_1   (Atlantic cod)   15 9
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   16 11
Takifugu_rubripes_76_4   (Torafugu)   41 26
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   24 14
Oryzias_latipes_76_1   (Japanese medaka)   22 14
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   8 6
Poecilia_formosa_76   (Amazon molly)   14 9
Oreochromis_niloticus_76_1.0   (Nile tilapia)   20 13
Astyanax_mexicanus_76   (Mexican tetra)   18 13
Danio_rerio_76_9   (Zebrafish)   37 22
Oikopleura_dioica 9 9
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   11 7
Ciona_intestinalis_76   (Vase tunicate)   7 5
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   28 21
Octopus_bimaculoides_280 2 2
Crassostrea_gigas_22   (Pacific oyster)   4 3
Lottia_gigantea_   (Owl limpet)   17 16
Helobdella_robusta_ 2 2
Capitella_sp._I_ 5 5
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1 1
Heliconius_melpomene_   (Postman butterfly)   2 2
Bombyx_mori_   (Domestic silkworm)   1 1
Nasonia_vitripennis_   (Jewel wasp)   3 3
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   2 2
Linepithema_humile_v1.1   (Argentine ant)   1 1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   2 2
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1 1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   2 2
Atta_cephalotes_v1.1 2 2
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1 1
Lucilia_cuprina   (Australian sheep blowfly)   2 2
Drosophila_grimshawi_1.3 1 1
Drosophila_willistoni_1.3 2 2
Drosophila_pseudoobscura_2.13 2 2
Drosophila_persimilis_1.3 1 1
Drosophila_suzukii 3 3
Drosophila_yakuba_1.3 4 4
Drosophila_simulans_1.3 4 4
Drosophila_sechellia_1.3 3 3
Drosophila_melanogaster_76_5   (Fruit fly)   6 6
Drosophila_erecta_1.3 4 4
Drosophila_ananassae_1.3 2 2
Drosophila_virilis_1.2 1 1
Drosophila_mojavensis_1.3 2 2
Megaselia_scalaris_22 1 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   4 4
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   5 5
Anopheles_darlingi_22   (American malaria mosquito)   2 2
Anopheles_gambiae_49_3j   (African malaria mosquito)   2 2
Tribolium_castaneum_3.0   (Red flour beetle)   2 2
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   2 2
Daphnia_pulex_   (Common water flea)   11 6
Sarcoptes_scabiei 1 1
Tetranychus_urticae_   (Two-spotted spider mite)   1 1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1 1
Pristionchus_pacificus_ 1 1
Onchocerca_volvulus_22 1 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   3 3
Caenorhabditis_japonica_ 1 1
Caenorhabditis_brenneri_ 1 1
Caenorhabditis_remanei_ 1 1
Caenorhabditis_elegans_76_235   (Roundworm)   1 1
Caenorhabditis_briggsae_2 1 1
Trichinella_spiralis_22 2 2
Hymenolepis_microstoma_ 1 1
Echinococcus_multilocularis_ 1 1
Echinococcus_granulosus_ 1 1
Taenia_solium_   (Pork tapeworm)   1 1
Schistosoma_mansoni_ 1 1
Mnemiopsis_leidyi   (Sea walnut)   1 1
Acropora_digitifera_v1.0 2 2
Nematostella_vectensis_1.0   (Starlet sea anemone)   8 8
Amphimedon_queenslandica 5 5
Trichoplax_adhaerens_ 2 2
Proterospongia_sp._ATCC_50818_ 5 2
Monosiga_brevicollis_ 9 4
Catenaria_anguillulae_PL171_v1.0 9 9
Allomyces_macrogynus_ATCC_38327_ 2 2
Spizellomyces_punctatus_DAOM_BR117_ 1 1
Symbiodinium_minutum_clade_B1_v1.2 27 17
Emiliania_huxleyi_CCMP1516_ 2 2
Haliangium_ochraceum_DSM_14365 9 6

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   26 16
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   6 6
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   2 2
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   1 1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   1 1
Sorangium_cellulosum_So0157-2 1 1
Myxococcus_stipitatus_DSM_14675 1 1

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   14 9
Pan_troglodytes_69_2.1.4   (Chimpanzee)   10 6
Gorilla_gorilla_69_3.1   (Western gorilla)   11 7
Pongo_abelii_69_2   (Sumatran orangutan)   12 8
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   13 8
Macaca_mulatta_69_1   (Rhesus monkey)   11 7
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   13 8
Otolemur_garnettii_69_3   (Small-eared galago)   14 9
Microcebus_murinus_69_1   (Gray mouse lemur)   9 7
Rattus_norvegicus_69_3.4   (Norway rat)   14 9
Mus_musculus_69_38   (House mouse)   12 8
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   10 7
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   10 7
Cavia_porcellus_69_3   (Domestic guinea pig)   11 7
Oryctolagus_cuniculus_69_2   (Rabbit)   12 8
Ochotona_princeps_69   (American pika)   11 7
Tupaia_belangeri_69   (Northern tree shrew)   7 6
Sus_scrofa_69_10.2   (Pig)   12 8
Bos_taurus_69_3.1   (Cattle)   13 8
Vicugna_pacos_69_1   (Alpaca)   6 3
Tursiops_truncatus_69_1   (Bottlenose dolphin)   11 7
Mustela_putorius_furo_69_1.0   (Domestic ferret)   13 8
Ailuropoda_melanoleuca_69_1   (Giant panda)   13 8
Canis_familiaris_69_3.1   (Dog)   13 8
Felis_catus_69   (Domestic cat)   7 5
Equus_caballus_69_2   (Horse)   12 7
Myotis_lucifugus_69_2.0   (Little brown bat)   10 6
Pteropus_vampyrus_69_1   (Large flying fox)   10 7
Sorex_araneus_69_1   (European shrew)   6 4
Erinaceus_europaeus_69   (Western European hedgehog)   8 6
Procavia_capensis_69_1   (Cape rock hyrax)   6 5
Loxodonta_africana_69_3   (African savanna elephant)   13 8
Echinops_telfairi_69   (Small Madagascar hedgehog)   5 5
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   7 5
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   7 6
Macropus_eugenii_69_1.0   (Tammar wallaby)   8 6
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   12 8
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   12 8
Ornithorhynchus_anatinus_69_5   (Platypus)   6 4
Petromyzon_marinus_69_7.0   (Sea lamprey)   3 2
Meleagris_gallopavo_69_2   (Turkey)   11 7
Gallus_gallus_69_2   (Chicken)   10 7
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   10 6
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   9 6
Anolis_carolinensis_69_2.0   (Green anole)   10 7
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   15 9
Latimeria_chalumnae_69_1   (Coelacanth)   13 9
Gadus_morhua_69_1   (Atlantic cod)   15 9
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   13 9
Takifugu_rubripes_69_4   (Torafugu)   14 9
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   18 10
Oryzias_latipes_69_1   (Japanese medaka)   18 12
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   8 6
Oreochromis_niloticus_69_1.0   (Nile tilapia)   14 9
Danio_rerio_69_9   (Zebrafish)   20 14
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   6 4
Ciona_intestinalis_69   (Vase tunicate)   7 5
Drosophila_melanogaster_69_5   (Fruit fly)   4 4
Caenorhabditis_elegans_69_215   (Roundworm)   1 1

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   45 29
Homo_sapiens__(NCBI_version)   (Human)   23 15
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   12 8
Loa_loa_v3.3_(Request)   (Eye worm)   1 1
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   1 1
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1 1
TargetDB__(Targets) 15 10
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 99 99
Protein_Data_Bank_(all_PDB_sequenc) 127 68
STRING_v9.0.5_(STRING) 413 291
Uniprot_2018_03_genome 3573 2419
PDB_chains_(SCOP_1.75)_(PDB) 3 3
NCBI_2017_08_genome 6008 3727

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