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Domain combinations for Troponin coil-coiled subunits superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Troponin coil-coiled subunits domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   48 48
Pan_troglodytes_76_2.1.4   (Chimpanzee)   6 6
Gorilla_gorilla_76_3.1   (Western gorilla)   14 14
Pongo_abelii_76_2   (Sumatran orangutan)   8 8
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   5 5
Papio_anubis_76   (Olive baboon)   8 8
Macaca_mulatta_76_1   (Rhesus monkey)   15 15
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   18 17
Otolemur_garnettii_76_3   (Small-eared galago)   6 6
Microcebus_murinus_76_1   (Gray mouse lemur)   3 3
Rattus_norvegicus_76_5.0   (Norway rat)   14 14
Mus_musculus_76_38   (House mouse)   53 53
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   6 6
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   6 6
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   6 6
Cavia_porcellus_76_3   (Domestic guinea pig)   10 10
Oryctolagus_cuniculus_76_2   (Rabbit)   2 2
Ochotona_princeps_76   (American pika)   4 4
Tupaia_belangeri_76   (Northern tree shrew)   4 4
Sus_scrofa_76_10.2   (Pig)   6 6
Bos_taurus_76_3.1   (Cattle)   12 12
Ovis_aries_76_3.1   (Sheep)   7 6
Vicugna_pacos_76_1   (Alpaca)   1 1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   4 4
Mustela_putorius_furo_76_1.0   (Domestic ferret)   6 6
Ailuropoda_melanoleuca_76_1   (Giant panda)   6 6
Canis_familiaris_76_3.1   (Dog)   14 14
Felis_catus_76_6.2   (Domestic cat)   7 7
Equus_caballus_76_2   (Horse)   6 6
Pteropus_vampyrus_76_1   (Large flying fox)   5 5
Sorex_araneus_76_1   (European shrew)   2 2
Erinaceus_europaeus_76   (Western European hedgehog)   1 1
Procavia_capensis_76_1   (Cape rock hyrax)   6 6
Loxodonta_africana_76_3   (African savanna elephant)   6 6
Echinops_telfairi_76   (Small Madagascar hedgehog)   6 5
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   8 8
Macropus_eugenii_76_1.0   (Tammar wallaby)   5 5
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   5 5
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   3 3
Ornithorhynchus_anatinus_76_5   (Platypus)   9 9
Saccoglossus_kowalevskii_v3.0 175 175
Petromyzon_marinus_76_7.0   (Sea lamprey)   5 5
Meleagris_gallopavo_76_2   (Turkey)   9 9
Gallus_gallus_76_4   (Chicken)   6 6
Anas_platyrhynchos_76_1.0   (Mallard)   4 4
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   4 4
Ficedula_albicollis_76_1.0   (Collared flycatcher)   5 5
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   6 6
Anolis_carolinensis_76_2.0   (Green anole)   6 6
Xenopus_laevis_   (African clawed frog)   32 32
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   10 10
Latimeria_chalumnae_76_1   (Coelacanth)   9 8
Lepisosteus_oculatus_76   (Spotted gar)   11 11
Gadus_morhua_76_1   (Atlantic cod)   19 19
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   21 21
Takifugu_rubripes_76_4   (Torafugu)   55 55
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   31 31
Oryzias_latipes_76_1   (Japanese medaka)   27 27
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   21 21
Poecilia_formosa_76   (Amazon molly)   24 24
Oreochromis_niloticus_76_1.0   (Nile tilapia)   27 27
Astyanax_mexicanus_76   (Mexican tetra)   18 18
Danio_rerio_76_9   (Zebrafish)   59 58
Oikopleura_dioica 12 12
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   7 7
Ciona_intestinalis_76   (Vase tunicate)   1 1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   6 6
Adineta_vaga 14 13
Octopus_bimaculoides_280 2 2
Crassostrea_gigas_22   (Pacific oyster)   1 1
Lottia_gigantea_   (Owl limpet)   2 2
Helobdella_robusta_ 6 6
Capitella_sp._I_ 2 2
Danaus_plexippus_OGS1.0   (Monarch butterfly)   4 2
Heliconius_melpomene_   (Postman butterfly)   3 2
Bombyx_mori_   (Domestic silkworm)   3 3
Nasonia_vitripennis_   (Jewel wasp)   2 2
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   5 5
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   4 4
Linepithema_humile_v1.1   (Argentine ant)   3 2
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   3 2
Solenopsis_invicta_v.2.2.3   (Red fire ant)   2 2
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   2 2
Atta_cephalotes_v1.1 4 4
Camponotus_floridanus_v3.3   (Florida carpenter ant)   3 2
Lucilia_cuprina   (Australian sheep blowfly)   3 2
Drosophila_grimshawi_1.3 3 3
Drosophila_willistoni_1.3 2 2
Drosophila_pseudoobscura_2.13 2 2
Drosophila_persimilis_1.3 2 2
Drosophila_suzukii 2 2
Drosophila_yakuba_1.3 2 2
Drosophila_simulans_1.3 2 2
Drosophila_sechellia_1.3 2 2
Drosophila_melanogaster_76_5   (Fruit fly)   25 25
Drosophila_erecta_1.3 2 2
Drosophila_ananassae_1.3 2 2
Drosophila_virilis_1.2 2 2
Drosophila_mojavensis_1.3 2 2
Megaselia_scalaris_22 1 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   13 13
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   3 3
Anopheles_darlingi_22   (American malaria mosquito)   2 2
Anopheles_gambiae_49_3j   (African malaria mosquito)   9 9
Tribolium_castaneum_3.0   (Red flour beetle)   3 2
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   2 2
Acyrthosiphon_pisum_   (Pea aphid)   2 2
Rhodnius_prolixus_22 3 3
Daphnia_pulex_   (Common water flea)   2 2
Strigamia_maritima_22 3 3
Sarcoptes_scabiei 4 4
Tetranychus_urticae_   (Two-spotted spider mite)   7 7
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   2 2
Pristionchus_pacificus_ 10 10
Meloidogyne_incognita_   (Southern root-knot nematode)   20 20
Meloidogyne_hapla_ 3 3
Onchocerca_volvulus_22 5 5
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   12 12
Caenorhabditis_japonica_ 9 9
Caenorhabditis_brenneri_ 9 9
Caenorhabditis_remanei_ 9 9
Caenorhabditis_elegans_76_235   (Roundworm)   20 20
Caenorhabditis_briggsae_2 8 8
Trichinella_spiralis_22 3 3
Hymenolepis_microstoma_ 3 3
Echinococcus_multilocularis_ 2 2
Echinococcus_granulosus_ 2 2
Taenia_solium_   (Pork tapeworm)   2 2
Schistosoma_mansoni_ 7 7
Mnemiopsis_leidyi   (Sea walnut)   1 1
Entamoeba_histolytica_1 1 1
Thellungiella_halophila_v173 1 1
Populus_trichocarpa_v156   (Black cottonwood)   1 1
Phytophthora_infestans_T30-4_ 1 1
Weissella_koreensis_KACC_15510 1 1
Lactobacillus_plantarum_JDM1 1 1
Paenibacillus_sp._JDR-2 1 1
Marinomonas_posidonica_IVIA-Po-181 1 1
Marinomonas_sp._MWYL1 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   15 15
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   17 17
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   14 14
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   10 10
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   13 13

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   7 7
Pan_troglodytes_69_2.1.4   (Chimpanzee)   6 6
Gorilla_gorilla_69_3.1   (Western gorilla)   6 6
Pongo_abelii_69_2   (Sumatran orangutan)   6 6
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   5 5
Macaca_mulatta_69_1   (Rhesus monkey)   6 6
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   7 7
Otolemur_garnettii_69_3   (Small-eared galago)   6 6
Microcebus_murinus_69_1   (Gray mouse lemur)   3 3
Rattus_norvegicus_69_3.4   (Norway rat)   7 7
Mus_musculus_69_38   (House mouse)   9 9
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   6 6
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   6 6
Cavia_porcellus_69_3   (Domestic guinea pig)   6 6
Oryctolagus_cuniculus_69_2   (Rabbit)   4 4
Ochotona_princeps_69   (American pika)   4 4
Tupaia_belangeri_69   (Northern tree shrew)   4 4
Sus_scrofa_69_10.2   (Pig)   4 4
Bos_taurus_69_3.1   (Cattle)   7 7
Vicugna_pacos_69_1   (Alpaca)   1 1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   4 4
Mustela_putorius_furo_69_1.0   (Domestic ferret)   6 6
Ailuropoda_melanoleuca_69_1   (Giant panda)   6 6
Canis_familiaris_69_3.1   (Dog)   6 6
Felis_catus_69   (Domestic cat)   5 5
Equus_caballus_69_2   (Horse)   6 6
Pteropus_vampyrus_69_1   (Large flying fox)   5 5
Sorex_araneus_69_1   (European shrew)   2 2
Erinaceus_europaeus_69   (Western European hedgehog)   1 1
Procavia_capensis_69_1   (Cape rock hyrax)   6 6
Loxodonta_africana_69_3   (African savanna elephant)   6 6
Echinops_telfairi_69   (Small Madagascar hedgehog)   6 5
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   2 2
Macropus_eugenii_69_1.0   (Tammar wallaby)   5 5
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   5 5
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   3 3
Ornithorhynchus_anatinus_69_5   (Platypus)   7 7
Petromyzon_marinus_69_7.0   (Sea lamprey)   5 5
Meleagris_gallopavo_69_2   (Turkey)   4 4
Gallus_gallus_69_2   (Chicken)   4 4
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   4 4
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   5 5
Anolis_carolinensis_69_2.0   (Green anole)   6 6
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   7 7
Latimeria_chalumnae_69_1   (Coelacanth)   8 7
Gadus_morhua_69_1   (Atlantic cod)   18 18
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   18 18
Takifugu_rubripes_69_4   (Torafugu)   13 13
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   21 21
Oryzias_latipes_69_1   (Japanese medaka)   19 19
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   21 21
Oreochromis_niloticus_69_1.0   (Nile tilapia)   20 20
Danio_rerio_69_9   (Zebrafish)   26 25
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   3 3
Ciona_intestinalis_69   (Vase tunicate)   1 1
Drosophila_melanogaster_69_5   (Fruit fly)   3 3
Caenorhabditis_elegans_69_215   (Roundworm)   8 8

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   50 50
Homo_sapiens__(NCBI_version)   (Human)   16 16
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   6 6
Heliconius_numata__(Incomplete) 1 1
Loa_loa_v3.3_(Request)   (Eye worm)   6 6
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   5 5
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   5 5
NCBI_viral_sequences_(Viral) 5 5
TargetDB__(Targets) 6 6
STRING_v9.0.5_(STRING) 304 303
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 22 22
Uniprot_2018_03_genome 4154 4090
NCBI_2017_08_genome 7981 7972
Protozoadb_2010_08_(Protozoadb) 2 2
UniProt__viral_sequences_(Viral) 1 1
Protein_Data_Bank_(all_PDB_sequenc) 32 32
PDB_chains_(SCOP_1.75)_(PDB) 7 7

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