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Domain combination pairs in Capnocytophaga ochracea DSM 7271

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

484 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Carboxypeptidase regulatory domain-like Porins 283
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2012
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 86
Actin-like ATPase domain Actin-like ATPase domain 83
P-loop containing nucleoside triphosphate hydrolases Translation proteins 75
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 73
Galactose-binding domain-like (Trans)glycosidases 76
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 65
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 55
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 52
CheY-like Homeodomain-like 55
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
Homodimeric domain of signal transducing histidine kinase CheY-like 55
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 55
beta-N-acetylhexosaminidase-like domain (Trans)glycosidases 54
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 55
(Trans)glycosidases Glycosyl hydrolase domain 53
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 53
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 54
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 54
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 43
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 43
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 43
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 42
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 41
Translation proteins EF-G C-terminal domain-like 43
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 44
Thiolase-like Thiolase-like 41
Homodimeric domain of signal transducing histidine kinase Homeodomain-like 44
Class II aaRS and biotin synthetases Class II aaRS ABD-related 44
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 44
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 43
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Homeodomain-like 44
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 33
Single hybrid motif CoA-dependent acyltransferases 32
Calcium-dependent phosphotriesterase Homodimeric domain of signal transducing histidine kinase 33
Calcium-dependent phosphotriesterase CheY-like 33
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 31
Calcium-dependent phosphotriesterase Calcium-dependent phosphotriesterase 33
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 33
PDZ domain-like ClpP/crotonase 31
TPR-like TPR-like 33
PLP-binding barrel Alanine racemase C-terminal domain-like 32
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 33
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 32
(Trans)glycosidases Galactose mutarotase-like 33
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 32
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 33
PreATP-grasp domain Rudiment single hybrid motif 31
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
Calcium-dependent phosphotriesterase Homeodomain-like 33
beta-Galactosidase/glucuronidase domain beta-Galactosidase/glucuronidase domain 33
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 32
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 33
Lysozyme-like beta-lactamase/transpeptidase-like 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Calcium-dependent phosphotriesterase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 33
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 33
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 31
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 32
L30e-like alpha/beta knot 31
PurM N-terminal domain-like PurM C-terminal domain-like 32
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 33
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
EF-G C-terminal domain-like EF-G C-terminal domain-like 32
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 32
Galactose-binding domain-like Galactose mutarotase-like 33
beta-Galactosidase/glucuronidase domain Galactose mutarotase-like 33
Nucleic acid-binding proteins RuvA domain 2-like 33
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 31
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Galactose mutarotase-like Six-hairpin glycosidases 21
Triger factor/SurA peptide-binding domain-like FKBP-like 22
CheY-like P-loop containing nucleoside triphosphate hydrolases 22
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 22
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 21
Regulatory protein AraC Homeodomain-like 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
HAD-like Calcium ATPase, transmembrane domain M 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 21
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 21
E set domains (Trans)glycosidases 21
Alpha-L RNA-binding motif Pseudouridine synthase 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
HCP-like HCP-like 22
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
DPP6 N-terminal domain-like alpha/beta-Hydrolases 22
Carboxypeptidase regulatory domain-like OmpA-like 22
Galactose-binding domain-like Galactose-binding domain-like 22
Homeodomain-like Homeodomain-like 22
OMPA-like OmpA-like 22
CBS-domain pair FAD-binding/transporter-associated domain-like 21
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
E set domains Glycosyl hydrolase domain 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
RuvA domain 2-like RuvA domain 2-like 22
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 22
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 22
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 22
DPP6 N-terminal domain-like OmpA-like 22
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Phospholipase D/nuclease Phospholipase D/nuclease 22
TPR-like OmpA-like 22
TSP type-3 repeat TSP type-3 repeat 22
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 21
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 21
TPR-like DPP6 N-terminal domain-like 22
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 22
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 21
Cyclophilin-like FKBP-like 22
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 21
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 21
Calcium ATPase, transduction domain A HAD-like 22
Enolase N-terminal domain-like Enolase C-terminal domain-like 21
ClpP/crotonase ClpP/crotonase 22
TrkA C-terminal domain-like TrkA C-terminal domain-like 21
Carbamate kinase-like ACT-like 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 22
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 22
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 21
HD-domain/PDEase-like Nucleotidyltransferase 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Glycerol-3-phosphate (1)-acyltransferase Acyl-CoA N-acyltransferases (Nat) 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 11
HD-domain/PDEase-like ACT-like 11
Ribonuclease H-like DNA/RNA polymerases 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Hypothetical protein SAV1430 Hypothetical protein SAV1430 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
TGS-like Class II aaRS and biotin synthetases 11
Lysozyme-like LysM domain 11
"Winged helix" DNA-binding domain HRDC-like 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
PKD domain PKD domain 11
PIN domain-like DNA/RNA polymerases 11
Trypsin-like serine proteases PDZ domain-like 11
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 11
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Homeodomain-like Probable bacterial effector-binding domain 11
Multiheme cytochromes TPR-like 11
Carbamate kinase-like NAD(P)-binding Rossmann-fold domains 11
"Winged helix" DNA-binding domain Iron-dependent repressor protein, dimerization domain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
FAD/NAD(P)-binding domain Ferredoxin reductase-like, C-terminal NADP-linked domain 11
beta-lactamase/transpeptidase-like Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
PheT/TilS domain Putative DNA-binding domain 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
MFS general substrate transporter MFS general substrate transporter 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
FAD/NAD(P)-binding domain Riboflavin synthase domain-like 11
C-type lectin-like C-type lectin-like 11
Oligoxyloglucan reducing end-specific cellobiohydrolase Oligoxyloglucan reducing end-specific cellobiohydrolase 11
Formate dehydrogenase/DMSO reductase, domains 1-3 4Fe-4S ferredoxins 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
OMPA-like TSP type-3 repeat 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
"Winged helix" DNA-binding domain Actin-like ATPase domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
alpha/beta-Hydrolases S-adenosyl-L-methionine-dependent methyltransferases 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
ACT-like NAD(P)-binding Rossmann-fold domains 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Nucleotidyltransferase TGS-like 11
Leukotriene A4 hydrolase N-terminal domain ARM repeat 11
YjeF N-terminal domain-like Ribokinase-like 11
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
DNA clamp DNA clamp 11
Translation proteins Translation proteins 11
NAD(P)-binding Rossmann-fold domains RmlC-like cupins 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
HCP-like OmpA-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
THUMP domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
LysM domain Periplasmic binding protein-like I 11
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
TerB-like Chaperone J-domain 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
PUA domain-like alpha/beta knot 11
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Metalloproteases ("zincins"), catalytic domain TSP type-3 repeat 11
Hypothetical protein SAV1430 Fe-S cluster assembly (FSCA) domain-like 11
YrdC/RibB RibA-like 11
TPR-like Carboxypeptidase regulatory domain-like 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
MgtE N-terminal domain-like CBS-domain pair 11
FKBP-like FKBP-like 11
Class II aaRS and biotin synthetases Translation proteins 11
CBS-domain pair MgtE membrane domain-like 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Formyltransferase FMT C-terminal domain-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Restriction endonuclease-like ValRS/IleRS/LeuRS editing domain 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Dimeric alpha+beta barrel NTF2-like 11
Flavoproteins Riboflavin synthase domain-like 11
Ribonuclease H-like GIY-YIG endonuclease 11
DNA-glycosylase Nudix 11
Restriction endonuclease-like Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins PheT/TilS domain 11
ACT-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Arabinanase/levansucrase/invertase Concanavalin A-like lectins/glucanases 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Translation proteins ThrRS/AlaRS common domain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Clc chloride channel CBS-domain pair 11
PHP14-like Phospholipase D/nuclease 11
NAD-binding domain of HMG-CoA reductase Substrate-binding domain of HMG-CoA reductase 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
Rhodanese/Cell cycle control phosphatase RmlC-like cupins 11
Class II aaRS ABD-related C-terminal domain of ProRS 11
Class II aaRS and biotin synthetases C-terminal domain of ProRS 11
Hypothetical protein PA1324 L domain-like 11
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 11
Periplasmic binding protein-like I ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 11
DPP6 N-terminal domain-like Carboxypeptidase regulatory domain-like 11
GroEL-intermediate domain like GroEL apical domain-like 11
Radical SAM enzymes RuvA domain 2-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
HCP-like Carboxypeptidase regulatory domain-like 11
Respiratory nitrate reductase 1 gamma chain alpha-helical ferredoxin 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
PurS-like FGAM synthase PurL, linker domain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
LysM domain SGNH hydrolase 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Tex N-terminal region-like RuvA domain 2-like 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
Tricorn protease N-terminal domain alpha/beta-Hydrolases 11
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 11
Ribonuclease H-like RuvA domain 2-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Outer membrane efflux proteins (OEP) 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 11
ADC-like 4Fe-4S ferredoxins 11
UROD/MetE-like UROD/MetE-like 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Multidrug efflux transporter AcrB transmembrane domain Glycerol-3-phosphate (1)-acyltransferase 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
(Trans)glycosidases beta-lactamase/transpeptidase-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
GroEL equatorial domain-like GroEL apical domain-like 11
Nucleotide-diphospho-sugar transferases Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain 11
Translation proteins PRC-barrel domain 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Ribosomal protein S5 domain 2-like Thioesterase/thiol ester dehydrase-isomerase 11
PDZ domain-like PDZ domain-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Zinc beta-ribbon DNA primase core 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
L9 N-domain-like Ribonuclease H-like 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
PurS-like Class I glutamine amidotransferase-like 11
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
LysM domain LysM domain 11
TGS-like Class II aaRS ABD-related 11
TSP type-3 repeat OmpA-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Nucleotidyltransferase ACT-like 11
PPK N-terminal domain-like PHP14-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
CheY-like C-terminal effector domain of the bipartite response regulators 11
Cna protein B-type domain Porins 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 11
vWA-like TPR-like 11
CarD-like TRCF domain-like 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
RNase III domain-like dsRNA-binding domain-like 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
Nucleic acid-binding proteins GAD domain-like 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
FMN-dependent nitroreductase-like FMN-dependent nitroreductase-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
SGNH hydrolase SGNH hydrolase 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
Tex N-terminal region-like Ribonuclease H-like 11
ACT-like ACT-like 11
RuvA domain 2-like MCP/YpsA-like 11
ARM repeat ARM repeat 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
NagB/RpiA/CoA transferase-like LmbE-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
TGS-like ACT-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 11
CheY-like Histidine-containing phosphotransfer domain, HPT domain 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
PIN domain-like Ribonuclease H-like 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidyltransferase Poly A polymerase C-terminal region-like 11
Multidrug efflux transporter AcrB transmembrane domain Outer membrane efflux proteins (OEP) 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
PurS-like PurM N-terminal domain-like 11
Single hybrid motif Single hybrid motif 11
HMA, heavy metal-associated domain HAD-like 11
HD-domain/PDEase-like TGS-like 11
PreATP-grasp domain PreATP-grasp domain 11
PRTase-like P-loop containing nucleoside triphosphate hydrolases 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Outer membrane efflux proteins (OEP) 11
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Penicillin binding protein dimerisation domain Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
Quinoprotein alcohol dehydrogenase-like C-terminal effector domain of the bipartite response regulators 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
PurS-like PurM C-terminal domain-like 11
Aldolase Chorismate mutase II 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
P-loop containing nucleoside triphosphate hydrolases S-adenosyl-L-methionine-dependent methyltransferases 11
Peptide methionine sulfoxide reductase Mss4-like 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Class II aaRS and biotin synthetases GAD domain-like 11
Periplasmic binding protein-like I Homeodomain-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Bacterial fluorinating enzyme, N-terminal domain Bacterial fluorinating enzyme, C-terminal domain 11
Ribosomal protein L6 Ribosomal protein L6 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Periplasmic binding protein-like II ACT-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Periplasmic binding protein-like I CheY-like 11
TGS-like ThrRS/AlaRS common domain 11
RuvA domain 2-like BRCT domain 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 11
Nucleotidylyl transferase tRNA-binding arm 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 11
beta-N-acetylhexosaminidase-like domain Galactose-binding domain-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleic acid-binding proteins BRCT domain 11
Restriction endonuclease-like Nucleotidylyl transferase 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Translation proteins Ribosomal protein S5 domain 2-like 11
Metalloproteases ("zincins"), catalytic domain ARM repeat 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Eukaryotic type KH-domain (KH-domain type I) HD-domain/PDEase-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Phospholipase D/nuclease P-loop containing nucleoside triphosphate hydrolases 11
Carbamate kinase-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
Iron-dependent repressor protein, dimerization domain C-terminal domain of transcriptional repressors 11
Ribonuclease H-like AF1531-like 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Periplasmic binding protein-like I Homodimeric domain of signal transducing histidine kinase 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11

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