Domain combination pairs in Helicobacter pylori OK113 and not in the PDB

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Domain combination pairs

81 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N)	Superfamily (C)	Number of occurrances	Number unique
HCP-like	HCP-like	4	2
CheW-like	CheY-like	4	2
HMA, heavy metal-associated domain	HAD-like	3	3
HMA, heavy metal-associated domain	Calcium ATPase, transmembrane domain M	3	3
HMA, heavy metal-associated domain	Calcium ATPase, transduction domain A	3	3
P-loop containing nucleoside triphosphate hydrolases	S-adenosyl-L-methionine-dependent methyltransferases	2	2
Chaperone J-domain	HSP40/DnaJ peptide-binding domain	2	2
CheC-like	Surface presentation of antigens (SPOA)	2	2
Lysozyme-like	LysM domain	1	1
HCP-like	TPR-like	1	1
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	HSP90 C-terminal domain	1	1
PUA domain-like	Ribosomal protein S5 domain 2-like	1	1
Nucleotidyltransferase	TGS-like	1	1
PHP domain-like	AF1531-like	1	1
FMN-binding split barrel	FMN-binding split barrel	1	1
ACT-like	Formyltransferase	1	1
Enolase C-terminal domain-like	Nitrite and sulphite reductase 4Fe-4S domain-like	1	1
Actin-like ATPase domain	Heat shock protein 70kD (HSP70), C-terminal subdomain	1	1
Ribokinase-like	Nucleotidylyl transferase	1	1
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	CheY-like	1	1
S-adenosyl-L-methionine-dependent methyltransferases	S-adenosyl-L-methionine-dependent methyltransferases	1	1
FAD-linked oxidases, C-terminal domain	alpha-helical ferredoxin	1	1
YrdC/RibB	RibA-like	1	1
DNA repair protein MutS, domain III	SMR domain-like	1	1
Nucleotide-diphospho-sugar transferases	RmlC-like cupins	1	1
Ribosomal protein S5 domain 2-like	HSP90 C-terminal domain	1	1
ADC synthase	D-aminoacid aminotransferase-like PLP-dependent enzymes	1	1
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)	ThrRS/AlaRS common domain	1	1
Barwin-like endoglucanases	Sporulation related repeat	1	1
Chaperone J-domain	DnaJ/Hsp40 cysteine-rich domain	1	1
Alpha-L RNA-binding motif	S-adenosyl-L-methionine-dependent methyltransferases	1	1
GroEL equatorial domain-like	GroEL equatorial domain-like	1	1
HMA, heavy metal-associated domain	Metal cation-transporting ATPase, ATP-binding domain N	1	1
Histidine-containing phosphotransfer domain, HPT domain	Homodimeric domain of signal transducing histidine kinase	1	1
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3	Nucleic acid-binding proteins	1	1
Translation initiation factor IF3, N-terminal domain	Translation initiation factor IF3, C-terminal domain	1	1
L,D-transpeptidase catalytic domain-like	NTF2-like	1	1
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)	Translation proteins	1	1
MetI-like	Periplasmic binding protein-like II	1	1
Outer membrane efflux proteins (OEP)	HlyD-like secretion proteins	1	1
Homodimeric domain of signal transducing histidine kinase	CheY-like	1	1
HlyD-like secretion proteins	HlyD-like secretion proteins	1	1
beta and beta-prime subunits of DNA dependent RNA-polymerase	beta and beta-prime subunits of DNA dependent RNA-polymerase	1	1
P-loop containing nucleoside triphosphate hydrolases	SMR domain-like	1	1
FAD-binding/transporter-associated domain-like	alpha-helical ferredoxin	1	1
Histidine-containing phosphotransfer domain, HPT domain	CheW-like	1	1
Ribonuclease PH domain 2-like	Nucleic acid-binding proteins	1	1
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	ACT-like	1	1
Multidrug resistance efflux transporter EmrE	Multidrug resistance efflux transporter EmrE	1	1
GIY-YIG endonuclease	RuvA domain 2-like	1	1
HD-domain/PDEase-like	TGS-like	1	1
Calcium ATPase, transmembrane domain M	P-loop containing nucleoside triphosphate hydrolases	1	1
Class II aaRS and biotin synthetases	Translation proteins	1	1
Class II aaRS and biotin synthetases	YbaK/ProRS associated domain	1	1
UbiD C-terminal domain-like	UbiD C-terminal domain-like	1	1
Putative DNA-binding domain	Resolvase-like	1	1
Ribosomal protein S5 domain 2-like	Type II DNA topoisomerase	1	1
N-terminal domain of DnaB helicase	P-loop containing nucleoside triphosphate hydrolases	1	1
NagB/RpiA/CoA transferase-like	alpha-helical ferredoxin	1	1
Histidine-containing phosphotransfer domain, HPT domain	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	1	1
FAD-linked oxidoreductase	ALDH-like	1	1
Peptide methionine sulfoxide reductase	Mss4-like	1	1
Flagellar hook protein flgE	Flagellar hook protein flgE	1	1
HAMP domain-like	Homodimeric domain of signal transducing histidine kinase	1	1
HAMP domain-like	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	1	1
Eukaryotic type KH-domain (KH-domain type I)	HD-domain/PDEase-like	1	1
GIY-YIG endonuclease	C-terminal UvrC-binding domain of UvrB	1	1
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	Type II DNA topoisomerase	1	1
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	CoaB-like	1	1
PHP domain-like	P-loop containing nucleoside triphosphate hydrolases	1	1
CBS-domain pair	FAD-binding/transporter-associated domain-like	1	1
Fe-S cluster assembly (FSCA) domain-like	P-loop containing nucleoside triphosphate hydrolases	1	1
Acylphosphatase/BLUF domain-like	YrdC/RibB	1	1
C-terminal UvrC-binding domain of UvrB	RuvA domain 2-like	1	1
FliG	FliG	1	1
Ribosomal protein S5 domain 2-like	Nucleic acid-binding proteins	1	1
Histidine-containing phosphotransfer domain, HPT domain	CheY-like	1	1
SufE/NifU	Fe-S cluster assembly (FSCA) domain-like	1	1
Type II DNA topoisomerase	GyrA/ParC C-terminal domain-like	1	1
YbaK/ProRS associated domain	Class II aaRS ABD-related	1	1
Prokaryotic type I DNA topoisomerase	Zinc beta-ribbon	1	1

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