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Domain combination pairs in Phycisphaera mikurensis NBRC 102666

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

539 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 305
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2316
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 138
Galactose-binding domain-like (Trans)glycosidases 127
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 121
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 114
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 107
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 107
TPR-like TPR-like 97
Actin-like ATPase domain Actin-like ATPase domain 94
Homeodomain-like Homeodomain-like 83
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 84
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 84
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 76
"Winged helix" DNA-binding domain Periplasmic binding protein-like I 71
Nucleotide cyclase EAL domain-like 73
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 76
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 76
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 73
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 76
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 73
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 64
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 65
P-loop containing nucleoside triphosphate hydrolases Translation proteins 65
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 63
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 65
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 64
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 65
GroES-like NAD(P)-binding Rossmann-fold domains 62
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 54
Regulatory protein AraC Homeodomain-like 54
Oligoxyloglucan reducing end-specific cellobiohydrolase Oligoxyloglucan reducing end-specific cellobiohydrolase 54
MetI-like MetI-like 54
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 51
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 53
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
Thiolase-like Thiolase-like 52
CheY-like C-terminal effector domain of the bipartite response regulators 42
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 41
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 43
Nucleic acid-binding proteins Nucleic acid-binding proteins 44
(Trans)glycosidases Glycosyl hydrolase domain 43
Enolase N-terminal domain-like Enolase C-terminal domain-like 41
Class II aaRS and biotin synthetases Class II aaRS ABD-related 44
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 31
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 31
Cupredoxins Cupredoxins 32
Ribosomal protein S5 domain 2-like P-loop containing nucleoside triphosphate hydrolases 33
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 32
CheY-like Nucleotide cyclase 32
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 33
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 33
Translation proteins EF-G C-terminal domain-like 32
GroEL equatorial domain-like GroEL-intermediate domain like 31
Phospholipase D/nuclease Phospholipase D/nuclease 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 32
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 32
PreATP-grasp domain Rudiment single hybrid motif 31
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 31
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 32
Calcium ATPase, transduction domain A HAD-like 33
GroEL-intermediate domain like GroEL apical domain-like 31
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 32
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 32
PurM N-terminal domain-like PurM C-terminal domain-like 32
vWA-like Class I glutamine amidotransferase-like 33
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 33
Periplasmic binding protein-like II MetI-like 33
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 31
GroEL equatorial domain-like GroEL apical domain-like 31
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 32
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 32
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 31
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 32
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 31
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 31
Glycoside hydrolase/deacetylase Families 57/38 glycoside transferase middle domain 33
PLP-binding barrel Alanine racemase C-terminal domain-like 32
EF-G C-terminal domain-like EF-G C-terminal domain-like 32
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 21
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 22
CarD-like TRCF domain-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
Alkaline phosphatase-like TPR-like 22
Formyltransferase FMT C-terminal domain-like 21
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 22
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
CheY-like EAL domain-like 21
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 22
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
GAF domain-like Homodimeric domain of signal transducing histidine kinase 22
CheY-like Homeodomain-like 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
ACT-like ACT-like 22
Nucleotidylyl transferase Ribokinase-like 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
P-loop containing nucleoside triphosphate hydrolases MOP-like 21
MgtE N-terminal domain-like MgtE membrane domain-like 21
Families 57/38 glycoside transferase middle domain Galactose mutarotase-like 22
alpha-helical ferredoxin Nucleotide-binding domain 22
TrkA C-terminal domain-like TrkA C-terminal domain-like 22
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
PDZ domain-like ClpP/crotonase 21
Alpha-L RNA-binding motif Pseudouridine synthase 21
Glycoside hydrolase/deacetylase Galactose mutarotase-like 22
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
vWA-like vWA-like 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 21
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 22
GAF domain-like EAL domain-like 21
PDZ domain-like PDZ domain-like 22
FucI/AraA N-terminal and middle domains FucI/AraA C-terminal domain-like 21
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
L30e-like alpha/beta knot 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
TPR-like P-loop containing nucleoside triphosphate hydrolases 22
Single hybrid motif CoA-dependent acyltransferases 21
Folate-binding domain Aminomethyltransferase beta-barrel domain 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
GAF domain-like Nucleotide cyclase 21
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 22
GAF domain-like PP2C-like 22
(Trans)glycosidases Class I glutamine amidotransferase-like 21
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 22
HAD-like Calcium ATPase, transmembrane domain M 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
CBS-domain pair MgtE membrane domain-like 21
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 21
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 21
MalF N-terminal region-like MetI-like 22
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 21
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 21
MgtE N-terminal domain-like CBS-domain pair 21
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Alkaline phosphatase-like P-loop containing nucleoside triphosphate hydrolases 22
P-loop containing nucleoside triphosphate hydrolases CarD-like 22
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 22
CBS-domain pair FAD-binding/transporter-associated domain-like 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 22
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
"Winged helix" DNA-binding domain GAF domain-like 21
P-loop containing nucleoside triphosphate hydrolases TrpR-like 21
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 21
CheY-like P-loop containing nucleoside triphosphate hydrolases 21
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 21
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 21
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
Periplasmic binding protein-like I Homeodomain-like 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
PPK N-terminal domain-like PHP14-like 11
Oligoxyloglucan reducing end-specific cellobiohydrolase Galactose-binding domain-like 11
Nucleic acid-binding proteins BRCT domain 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
AraD/HMP-PK domain-like NAD(P)-binding Rossmann-fold domains 11
TPR-like YggX-like 11
Molybdenum cofactor biosynthesis protein C, MoaC Molybdenum cofactor biosynthesis proteins 11
Eukaryotic type KH-domain (KH-domain type I) HD-domain/PDEase-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Aldolase AFP III-like domain 11
Bet v1-like NAD(P)-binding Rossmann-fold domains 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
Ribosomal protein S5 domain 2-like Thioesterase/thiol ester dehydrase-isomerase 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
GAF domain-like HD-domain/PDEase-like 11
Ferritin-like HAD-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
CheY-like HD-domain/PDEase-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Nucleic acid-binding proteins GAD domain-like 11
PIN domain-like Ribonuclease H-like 11
PreATP-grasp domain PreATP-grasp domain 11
GroES-like GroES-like 11
RuvA domain 2-like Nucleotidyltransferase 11
Pili subunits Pili subunits 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Nqo1 middle domain-like Nqo1C-terminal domain-like 11
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 11
FKBP-like FKBP-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Phase 1 flagellin Phase 1 flagellin 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
PilZ domain-like PilZ domain-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
beta-Galactosidase/glucuronidase domain beta-Galactosidase/glucuronidase domain 11
Putative DNA-binding domain CheY-like 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains RING/U-box 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
UDP-Glycosyltransferase/glycogen phosphorylase HAD-like 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
Phoshotransferase/anion transport protein TrkA C-terminal domain-like 11
Translation proteins Ribosomal protein S5 domain 2-like 11
HD-domain/PDEase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
SMAD/FHA domain GAF domain-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Radical SAM enzymes RuvA domain 2-like 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Glycosyl hydrolase domain Galactose-binding domain-like 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III TK C-terminal domain-like 11
TK C-terminal domain-like Thiolase-like 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
"Winged helix" DNA-binding domain HRDC-like 11
L9 N-domain-like Ribonuclease H-like 11
DNA methylase specificity domain DNA methylase specificity domain 11
Urease, gamma-subunit Urease, beta-subunit 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
(Trans)glycosidases Galactose mutarotase-like 11
Single hybrid motif Thiolase-like 11
(Trans)glycosidases Type I dockerin domain 11
Translation proteins Translation proteins 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
PLP-dependent transferases PLP-dependent transferases 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
YrdC/RibB RibA-like 11
Tetrapyrrole methylase HemD-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Methionine synthase domain Methionine synthase activation domain-like 11
LexA/Signal peptidase LexA/Signal peptidase 11
Trypsin-like serine proteases PDZ domain-like 11
Trimeric LpxA-like enzymes Trimeric LpxA-like enzymes 11
RuvA domain 2-like BRCT domain 11
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
Putative DNA-binding domain Cobalamin (vitamin B12)-binding domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Zinc beta-ribbon DNA primase core 11
Thiamin diphosphate-binding fold (THDP-binding) Thiolase-like 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Class II aaRS and biotin synthetases Translation proteins 11
DNA-glycosylase Nudix 11
Nucleotidylyl transferase tRNA-binding arm 11
Periplasmic binding protein-like II ACT-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
PHP14-like Phospholipase D/nuclease 11
FAD/NAD(P)-binding domain ISP domain 11
Cytochrome c Soluble quinoprotein glucose dehydrogenase 11
AraD/HMP-PK domain-like AraD/HMP-PK domain-like 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
RNase III domain-like dsRNA-binding domain-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
CheC-like Surface presentation of antigens (SPOA) 11
HRDC-like HRDC-like 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 11
PIN domain-like DNA/RNA polymerases 11
GAF domain-like PYP-like sensor domain (PAS domain) 11
TGS-like Class II aaRS and biotin synthetases 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Putative DNA-binding domain PheT/TilS domain 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
DNA polymerase beta, N-terminal domain-like Nucleotidyltransferase 11
PK beta-barrel domain-like PK C-terminal domain-like 11
UDP-Glycosyltransferase/glycogen phosphorylase Six-hairpin glycosidases 11
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 11
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 11
Glutathione synthetase ATP-binding domain-like TrkA C-terminal domain-like 11
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Cupredoxins Cytochrome c 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
SMAD/FHA domain vWA-like 11
"Winged helix" DNA-binding domain Nudix 11
alpha/beta-Hydrolases S-adenosyl-L-methionine-dependent methyltransferases 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Sialidases Actin-crosslinking proteins 11
SMAD/FHA domain Homodimeric domain of signal transducing histidine kinase 11
SMAD/FHA domain P-loop containing nucleoside triphosphate hydrolases 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 11
LysM domain L,D-transpeptidase catalytic domain-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Ribonuclease H-like HRDC-like 11
beta-N-acetylhexosaminidase-like domain (Trans)glycosidases 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Carbamate kinase-like ACT-like 11
Tetrahydrobiopterin biosynthesis enzymes-like Tetrahydrobiopterin biosynthesis enzymes-like 11
Serine metabolism enzymes domain ACT-like 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Nucleic acid-binding proteins RuvA domain 2-like 11
ACT-like Formyltransferase 11
DNA topoisomerase I domain DNA breaking-rejoining enzymes 11
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III Thiamin diphosphate-binding fold (THDP-binding) 11
Flavoproteins Riboflavin synthase domain-like 11
Methylglyoxal synthase-like Metallo-dependent hydrolases 11
Nucleotidyltransferase PHP domain-like 11
Aldolase NAD(P)-binding Rossmann-fold domains 11
HD-domain/PDEase-like Homodimeric domain of signal transducing histidine kinase 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Actin-like ATPase domain SIS domain 11
Arabinanase/levansucrase/invertase Arabinanase/levansucrase/invertase 11
GAF domain-like Homeodomain-like 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
LysM domain LysM domain 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
DNA polymerase beta, N-terminal domain-like RuvA domain 2-like 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Clc chloride channel CBS-domain pair 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 11
E set domains Glycosyl hydrolase domain 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
E set domains Six-hairpin glycosidases 11
Nucleotide-diphospho-sugar transferases Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain 11
Integrin alpha N-terminal domain Integrin alpha N-terminal domain 11
Ribonuclease H-like Ribonuclease H-like 11
Periplasmic binding protein-like II GlnB-like 11
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 11
Thiamin diphosphate-binding fold (THDP-binding) Single hybrid motif 11
Cytochrome c oxidase subunit III-like Cytochrome c oxidase subunit III-like 11
CheY-like CheY-like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
FliG FliG 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Molybdenum cofactor biosynthesis proteins CinA-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
PH0987 N-terminal domain-like Cyclophilin-like 11
ClpP/crotonase ClpP/crotonase 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
Carbamate kinase-like PUA domain-like 11
P-loop containing nucleoside triphosphate hydrolases E set domains 11
YrdC/RibB Phosphotyrosine protein phosphatases I 11
LmbE-like S-adenosyl-L-methionine-dependent methyltransferases 11
Galactose mutarotase-like Six-hairpin glycosidases 11
Ribosomal protein L6 Ribosomal protein L6 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Nucleotidyltransferase Poly A polymerase C-terminal region-like 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Chorismate mutase II ACT-like 11
SGNH hydrolase Anthrax protective antigen 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Folate-binding domain TrmE connector domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 11
E set domains E set domains 11
HlyD-like secretion proteins HlyD-like secretion proteins 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
Helical scaffold and wing domains of SecA Helical scaffold and wing domains of SecA 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 11
NagB/RpiA/CoA transferase-like LmbE-like 11
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
TK C-terminal domain-like Single hybrid motif 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
GAF domain-like CheY-like 11
ADC-like 4Fe-4S ferredoxins 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Galactose-binding domain-like Galactose mutarotase-like 11
Quinoprotein alcohol dehydrogenase-like Quinoprotein alcohol dehydrogenase-like 11
Putative DNA-binding domain Putative DNA-binding domain 11
Class II aaRS and biotin synthetases GAD domain-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Six-hairpin glycosidases Six-hairpin glycosidases 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
C-terminal domain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Translation proteins ThrRS/AlaRS common domain 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
DNA polymerase beta, N-terminal domain-like PHP domain-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Zinc beta-ribbon Zinc beta-ribbon 11
HD-domain/PDEase-like HD-domain/PDEase-like 11
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
FMN-binding split barrel UbiD C-terminal domain-like 11
E set domains (Trans)glycosidases 11
HD-domain/PDEase-like Nucleotide cyclase 11
DinB/YfiT-like putative metalloenzymes C-type lectin-like 11
Aldolase post-HMGL domain-like 11
Glycoside hydrolase/deacetylase Nucleotide-diphospho-sugar transferases 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain NAD(P)-linked oxidoreductase 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
Ribonuclease H-like DNA/RNA polymerases 11
Concanavalin A-like lectins/glucanases NHL repeat 11
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Ferritin-like Calcium ATPase, transmembrane domain M 11
PilZ domain-like Chaperone J-domain 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
beta-Galactosidase/glucuronidase domain Galactose mutarotase-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
"Helical backbone" metal receptor "Helical backbone" metal receptor 11
Folate-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Oligoxyloglucan reducing end-specific cellobiohydrolase Sialidases 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
Chorismate mutase II Periplasmic binding protein-like II 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
TGS-like Class II aaRS ABD-related 11
SMAD/FHA domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 11
Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 11
CheY-like Histidine-containing phosphotransfer domain, HPT domain 11
RmlC-like cupins Homeodomain-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
NAD(P)-binding Rossmann-fold domains NAD(P)-linked oxidoreductase 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
GAF domain-like GAF domain-like 11
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 11
Ferritin-like Calcium ATPase, transduction domain A 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Formate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3 11
3-carboxy-cis,cis-mucoante lactonizing enzyme YVTN repeat-like/Quinoprotein amine dehydrogenase 11
DNA clamp DNA clamp 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
PUA domain-like alpha/beta knot 11
Triger factor/SurA peptide-binding domain-like FKBP-like 11
Oligoxyloglucan reducing end-specific cellobiohydrolase Actin-crosslinking proteins 11
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Pectin lyase-like Autotransporter 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
ISP domain Bet v1-like 11
Cytochrome c Cytochrome c 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
Galactose mutarotase-like E set domains 11
RuvA domain 2-like PHP domain-like 11
TPR-like C-terminal domain of RNA polymerase alpha subunit 11
Radical SAM enzymes Radical SAM enzymes 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
TGS-like ThrRS/AlaRS common domain 11
Nucleotide-binding domain Nucleotide-binding domain 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Ankyrin repeat Ankyrin repeat 11
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 11
Aldolase Aminoacid dehydrogenase-like, N-terminal domain 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
cAMP-binding domain-like FAD/NAD(P)-binding domain 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
ACP-like Thioesterase/thiol ester dehydrase-isomerase 11

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