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Domain combination pairs in Halogeometricum borinquense DSM 11551

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

524 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2317
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1816
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 1817
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 162
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 167
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 1611
PYP-like sensor domain (PAS domain) GAF domain-like 1615
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 1513
CheY-like PYP-like sensor domain (PAS domain) 1110
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 103
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 103
GroES-like NAD(P)-binding Rossmann-fold domains 101
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 109
"Winged helix" DNA-binding domain GAF domain-like 102
CheY-like GAF domain-like 109
P-loop containing nucleoside triphosphate hydrolases MOP-like 92
GAF domain-like GAF domain-like 99
CheY-like Homodimeric domain of signal transducing histidine kinase 98
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 82
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 81
CheY-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 87
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 82
GAF domain-like Homodimeric domain of signal transducing histidine kinase 87
Cupredoxins Cupredoxins 82
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 84
Zinc beta-ribbon Cyclin-like 71
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 73
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 73
Cyclin-like Cyclin-like 71
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 63
Enolase N-terminal domain-like Enolase C-terminal domain-like 61
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 62
Thiolase-like Thiolase-like 62
P-loop containing nucleoside triphosphate hydrolases Translation proteins 64
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 52
TrkA C-terminal domain-like TrkA C-terminal domain-like 53
Nucleic acid-binding proteins Nucleic acid-binding proteins 54
HAMP domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 53
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 51
Calcium ATPase, transduction domain A HAD-like 55
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 52
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 52
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 52
Carbohydrate binding domain PKD domain 53
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 51
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 54
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 44
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 42
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 42
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 43
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 42
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 41
Class II aaRS and biotin synthetases Class II aaRS ABD-related 44
PKD domain (Trans)glycosidases 42
HMA, heavy metal-associated domain HAD-like 44
Carbohydrate binding domain (Trans)glycosidases 42
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 42
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 42
PurM N-terminal domain-like PurM C-terminal domain-like 42
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 42
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 42
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 32
GroEL-intermediate domain like GroEL apical domain-like 31
"Winged helix" DNA-binding domain TrmB C-terminal domain-like 32
"Winged helix" DNA-binding domain Sec63 N-terminal domain-like 33
Quinoprotein alcohol dehydrogenase-like Quinoprotein alcohol dehydrogenase-like 32
GroEL equatorial domain-like GroEL apical domain-like 31
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 31
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 33
GAF domain-like Sigma3 and sigma4 domains of RNA polymerase sigma factors 33
P-loop containing nucleoside triphosphate hydrolases TGS-like 31
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 33
ADC-like Cdc48 domain 2-like 31
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Metalloproteases ("zincins"), catalytic domain Metalloproteases ("zincins"), catalytic domain 32
Cdc48 domain 2-like P-loop containing nucleoside triphosphate hydrolases 31
PreATP-grasp domain Rudiment single hybrid motif 32
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 31
Aldehyde ferredoxin oxidoreductase, N-terminal domain Aldehyde ferredoxin oxidoreductase, C-terminal domains 31
CBS-domain pair CBS-domain pair 32
TATA-box binding protein-like TATA-box binding protein-like 31
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 31
"Winged helix" DNA-binding domain Phospholipase D/nuclease 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 32
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 33
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 32
"Winged helix" DNA-binding domain Iron-dependent repressor protein, dimerization domain 32
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 31
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 31
Folate-binding domain Aminomethyltransferase beta-barrel domain 31
ClpP/crotonase ClpP/crotonase 32
GroEL equatorial domain-like GroEL-intermediate domain like 31
ADC-like P-loop containing nucleoside triphosphate hydrolases 31
Rhodanese/Cell cycle control phosphatase Metallo-hydrolase/oxidoreductase 31
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 32
Calcium ATPase, transmembrane domain M HAD-like 33
P-loop containing nucleoside triphosphate hydrolases Sec63 N-terminal domain-like 33
Actin-like ATPase domain Actin-like ATPase domain 32
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 31
Translation initiation factor 2 beta, aIF2beta, N-terminal domain Zinc-binding domain of translation initiation factor 2 beta 22
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 22
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
Translation proteins ThrRS/AlaRS common domain 22
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 21
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 21
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 21
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 22
Carbohydrate binding domain Chitinase insertion domain 21
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 22
Nqo5-like HydB/Nqo4-like 21
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
DNA clamp DNA clamp 21
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 22
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 22
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 21
Glutamine synthetase/guanido kinase GatB/YqeY motif 22
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 21
Iron-dependent repressor protein, dimerization domain C-terminal domain of transcriptional repressors 21
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 21
Aconitase iron-sulfur domain LeuD/IlvD-like 22
Periplasmic binding protein-like II Periplasmic binding protein-like II 22
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 22
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 21
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III TK C-terminal domain-like 21
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 21
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 21
(Trans)glycosidases Chitinase insertion domain 21
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III Thiamin diphosphate-binding fold (THDP-binding) 21
"Winged helix" DNA-binding domain Nucleotidyltransferase 22
MetI-like MetI-like 21
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Thioredoxin-like Six-hairpin glycosidases 22
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 21
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 21
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 22
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 21
DPP6 N-terminal domain-like alpha/beta-Hydrolases 22
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 21
PA domain Zn-dependent exopeptidases 21
Thioredoxin-like GST C-terminal domain-like 21
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
PKD domain Chitinase insertion domain 21
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 21
Staphylococcal nuclease Staphylococcal nuclease 22
CBS-domain pair ParB/Sulfiredoxin 21
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 21
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 21
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
Ribbon-helix-helix ACT-like 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 22
MoeA N-terminal region -like MoeA C-terminal domain-like 22
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 21
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 22
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
NAD(P)-binding Rossmann-fold domains DHH phosphoesterases 21
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 22
Nucleic acid-binding proteins DHH phosphoesterases 21
Dimeric alpha+beta barrel Dimeric alpha+beta barrel 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 22
Phospholipase D/nuclease Phospholipase D/nuclease 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 21
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
ACT-like ACT-like 22
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 22
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 22
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 22
HMA, heavy metal-associated domain Metal cation-transporting ATPase, ATP-binding domain N 22
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 21
tRNA-guanine transglycosylase Pre-PUA domain 22
6-phosphogluconate dehydrogenase C-terminal domain-like ClpP/crotonase 21
vWA-like Class I glutamine amidotransferase-like 22
Translational machinery components L30e-like 22
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 21
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 21
Pre-PUA domain PUA domain-like 22
PYP-like sensor domain (PAS domain) Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 22
Pectin lyase-like Pectin lyase-like 21
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 22
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 21
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 22
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 21
Calcium ATPase, transmembrane domain M Metal cation-transporting ATPase, ATP-binding domain N 22
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Initiation factor IF2/eIF5b, domain 3 Translation proteins 11
Chaperone J-domain 2Fe-2S ferredoxin-like 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
Zinc-binding domain of translation initiation factor 2 beta Nucleic acid-binding proteins 11
CBS-domain pair FAD-binding/transporter-associated domain-like 11
P-loop containing nucleoside triphosphate hydrolases Rad50 coiled-coil Zn hook 11
S-adenosyl-L-methionine-dependent methyltransferases Six-hairpin glycosidases 11
Actin-like ATPase domain Protein kinase-like (PK-like) 11
Nucleic acid-binding proteins eIF-2-alpha, C-terminal domain 11
PKD domain Terpenoid cyclases/Protein prenyltransferases 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
PIN domain-like Prokaryotic type KH domain (KH-domain type II) 11
Homing endonucleases Homing endonucleases 11
THUMP domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 11
PPK N-terminal domain-like PHP14-like 11
Trimeric LpxA-like enzymes Trimeric LpxA-like enzymes 11
ACT-like Formyltransferase 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
N-terminal, heterodimerisation domain of RBP7 (RpoE) Nucleic acid-binding proteins 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
2Fe-2S ferredoxin-like ADC-like 11
"Winged helix" DNA-binding domain Protein kinase-like (PK-like) 11
ARM repeat ARM repeat 11
Soluble quinoprotein glucose dehydrogenase Concanavalin A-like lectins/glucanases 11
Nucleotidyltransferase PHP domain-like 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Hedgehog/intein (Hint) domain lambda repressor-like DNA-binding domains 11
N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 Translational machinery components 11
AN1-like Zinc finger Rhomboid-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
DnaJ/Hsp40 cysteine-rich domain Pseudouridine synthase 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Nucleotidyltransferase PAP/Archaeal CCA-adding enzyme, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 11
4Fe-4S ferredoxins P-loop containing nucleoside triphosphate hydrolases 11
GIY-YIG endonuclease RuvA domain 2-like 11
"Winged helix" DNA-binding domain CheY-like 11
GatD N-terminal domain-like Glutaminase/Asparaginase 11
eIF2alpha middle domain-like eIF-2-alpha, C-terminal domain 11
Oxidoreductase molybdopterin-binding domain E set domains 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
gp5 N-terminal domain-like Phage fibre proteins 11
Bacterial fluorinating enzyme, N-terminal domain Bacterial fluorinating enzyme, C-terminal domain 11
Myosin rod fragments Smc hinge domain 11
Periplasmic binding protein-like II ACT-like 11
RuvA domain 2-like PHP domain-like 11
Subtilisin-like Pectin lyase-like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
DNA breaking-rejoining enzymes GAF domain-like 11
TGS-like Class II aaRS and biotin synthetases 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Carbamate kinase-like ACT-like 11
tRNA-guanine transglycosylase PUA domain-like 11
"Winged helix" DNA-binding domain Riboflavin kinase-like 11
Nucleic acid-binding proteins RuvA domain 2-like 11
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
Staphylococcal nuclease Lamin A/C globular tail domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Homing endonucleases P-loop containing nucleoside triphosphate hydrolases 11
PLP-binding barrel Alanine racemase C-terminal domain-like 11
Myosin rod fragments Tropomyosin 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Glucocorticoid receptor-like (DNA-binding domain) 11
EF-G C-terminal domain-like EF-G C-terminal domain-like 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 11
P-loop containing nucleoside triphosphate hydrolases Acyl-CoA N-acyltransferases (Nat) 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Respiratory nitrate reductase 1 gamma chain alpha-helical ferredoxin 11
Rubredoxin-like "Winged helix" DNA-binding domain 11
Periplasmic binding protein-like II GlnB-like 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Purple acid phosphatase, N-terminal domain Metallo-dependent phosphatases 11
Nudix NagB/RpiA/CoA transferase-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
PDZ domain-like PDZ domain-like 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Radical SAM enzymes PsbU/PolX domain-like 11
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 11
FMN-dependent nitroreductase-like FMN-dependent nitroreductase-like 11
Histone-fold Histone-fold 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Phospholipase D/nuclease P-loop containing nucleoside triphosphate hydrolases 11
Class II aaRS and biotin synthetases Translation proteins 11
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 11
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
HAD-like Nudix 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Hypothetical protein AF0491, middle domain EF-G C-terminal domain-like 11
GAD domain-like GatB/YqeY motif 11
Rudiment single hybrid motif Single hybrid motif 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Periplasmic binding protein-like I Periplasmic binding protein-like I 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
MurD-like peptide ligases, catalytic domain Dihydropteroate synthetase-like 11
Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit III-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
PK beta-barrel domain-like Phosphohistidine domain 11
tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease catalytic domain-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
MurD-like peptide ligases, peptide-binding domain Dihydropteroate synthetase-like 11
P-loop containing nucleoside triphosphate hydrolases RuvA domain 2-like 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
TGS-like Class II aaRS ABD-related 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
Nucleic acid-binding proteins eIF2alpha middle domain-like 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Nucleic acid-binding proteins Hedgehog/intein (Hint) domain 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Serine metabolism enzymes domain ACT-like 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Periplasmic binding protein-like II 11
Rad51 N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
ATP-dependent DNA ligase DNA-binding domain Nucleic acid-binding proteins 11
Thiolase-like Nucleic acid-binding proteins 11
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 11
FYSH domain EF-G C-terminal domain-like 11
Nucleic acid-binding proteins BRCT domain 11
lambda repressor-like DNA-binding domains P-loop containing nucleoside triphosphate hydrolases 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Hedgehog/intein (Hint) domain P-loop containing nucleoside triphosphate hydrolases 11
Fibronectin type III Fibronectin type III 11
Subtilisin-like Carboxypeptidase regulatory domain-like 11
FYSH domain Hypothetical protein AF0491, middle domain 11
Hedgehog/intein (Hint) domain Hedgehog/intein (Hint) domain 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Nqo1 middle domain-like Nqo1C-terminal domain-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
Glutamine synthetase/guanido kinase GAD domain-like 11
CbiG N-terminal domain-like CobE/GbiG C-terminal domain-like 11
TATA-box binding protein-like DNA-glycosylase 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like 11
tRNA-binding arm Class II aaRS and biotin synthetases 11
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 11
S-adenosyl-L-methionine-dependent methyltransferases Nucleic acid-binding proteins 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Acyl-CoA N-acyltransferases (Nat) SCP-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Glutathione synthetase ATP-binding domain-like Acid proteases 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
PreATP-grasp domain PreATP-grasp domain 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
tRNA-guanine transglycosylase Uracil-DNA glycosylase-like 11
PRTase-like PRTase-like 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Prokaryotic type KH domain (KH-domain type II) Metallo-hydrolase/oxidoreductase 11
PHP14-like Phospholipase D/nuclease 11
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
TGS-like ThrRS/AlaRS common domain 11
P-loop containing nucleoside triphosphate hydrolases Tropomyosin 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Dom34/Pelota N-terminal domain-like Translational machinery components 11
Carboxypeptidase regulatory domain-like Pectin lyase-like 11
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
NAD(P)-binding Rossmann-fold domains ACT-like 11
Radical SAM enzymes Acyl-CoA N-acyltransferases (Nat) 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
NAD-binding domain of HMG-CoA reductase Substrate-binding domain of HMG-CoA reductase 11
CBS-domain pair Thioesterase/thiol ester dehydrase-isomerase 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 11
NosL/MerB-like Pectin lyase-like 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
Uracil-DNA glycosylase-like Pre-PUA domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
MFS general substrate transporter MFS general substrate transporter 11
RuvA domain 2-like BRCT domain 11
Six-hairpin glycosidases Galactose mutarotase-like 11
"Winged helix" DNA-binding domain TrkA C-terminal domain-like 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Dom34/Pelota N-terminal domain-like L30e-like 11
PKD domain Concanavalin A-like lectins/glucanases 11
Hedgehog/intein (Hint) domain Homing endonucleases 11
EPT/RTPC-like RNA 3'-terminal phosphate cyclase, RPTC, insert domain 11
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 11
PK C-terminal domain-like Phosphohistidine domain 11
Homing endonucleases lambda repressor-like DNA-binding domains 11
PLP-dependent transferases SufE/NifU 11
Class II aaRS ABD-related C-terminal domain of ProRS 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
CheC-like CheC-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Nucleic acid-binding proteins lambda repressor-like DNA-binding domains 11
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
P-loop containing nucleoside triphosphate hydrolases vWA-like 11
PAP/OAS1 substrate-binding domain PAP/Archaeal CCA-adding enzyme, C-terminal domain 11
Six-hairpin glycosidases Six-hairpin glycosidases 11
Translation proteins Ribosomal protein S5 domain 2-like 11
Nucleic acid-binding proteins Homing endonucleases 11
(Trans)glycosidases Glycosyl hydrolase domain 11
Creatinase/aminopeptidase "Winged helix" DNA-binding domain 11
tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like 11
MoeA C-terminal domain-like Periplasmic binding protein-like II 11
Class I glutamine amidotransferase-like Type I dockerin domain 11
Translation initiation factor 2 beta, aIF2beta, N-terminal domain Nucleic acid-binding proteins 11
Formyltransferase Cytidine deaminase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 11
Trypsin-like serine proteases PDZ domain-like 11
Class I glutamine amidotransferase-like Staphylococcal nuclease 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
DNA polymerase beta, N-terminal domain-like PHP domain-like 11
"Winged helix" DNA-binding domain MOP-like 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like 11
Metalloproteases ("zincins"), catalytic domain TSP type-3 repeat 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
alpha/beta-Hydrolases Sec63 N-terminal domain-like 11
Molybdenum cofactor biosynthesis proteins Periplasmic binding protein-like II 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
DNA polymerase beta, N-terminal domain-like RuvA domain 2-like 11
"Winged helix" DNA-binding domain Restriction endonuclease-like 11
MalF N-terminal region-like MetI-like 11
Nucleic acid-binding proteins Ribonuclease H-like 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Nucleic acid-binding proteins FomD-like 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
F1F0 ATP synthase subunit B, membrane domain V-type ATPase subunit E-like 11
P-loop containing nucleoside triphosphate hydrolases Microbial and mitochondrial ADK, insert "zinc finger" domain 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
Chelatase Thioredoxin-like 11
Nucleotidyltransferase PAP/OAS1 substrate-binding domain 11
Ribosomal protein L6 Ribosomal protein L6 11
Staphylococcal nuclease Type I dockerin domain 11
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 11
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 11
Phospholipase D/nuclease TrmB C-terminal domain-like 11
Rad51 N-terminal domain-like Ribosomal protein L32e 11
4Fe-4S ferredoxins ADC-like 11
CheY-like Methylesterase CheB, C-terminal domain 11
"Winged helix" DNA-binding domain PYP-like sensor domain (PAS domain) 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Ribonuclease H-like DNA/RNA polymerases 11
DNA polymerase beta, N-terminal domain-like Nucleotidyltransferase 11
Voltage-gated potassium channels TrkA C-terminal domain-like 11
Pseudouridine synthase PUA domain-like 11
P-loop containing nucleoside triphosphate hydrolases Myosin rod fragments 11
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 11
CheY-like Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
Soluble quinoprotein glucose dehydrogenase PKD domain 11
LEA14-like LEA14-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Methyl-accepting chemotaxis protein (MCP) signaling domain 11
PreATP-grasp domain Single hybrid motif 11
Single hybrid motif CoA-dependent acyltransferases 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Putative DNA-binding domain Putative DNA-binding domain 11
RuvA domain 2-like Nucleotidyltransferase 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Tricorn protease N-terminal domain alpha/beta-Hydrolases 11
PhoU-like PhoU-like 11
Eukaryotic type KH-domain (KH-domain type I) Eukaryotic type KH-domain (KH-domain type I) 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
P-loop containing nucleoside triphosphate hydrolases Prefoldin 11
Domain of the SRP/SRP receptor G-proteins Signal peptide-binding domain 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
Nitrous oxide reductase, N-terminal domain Cupredoxins 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
Restriction endonuclease-like RuvA domain 2-like 11
Nucleotide-diphospho-sugar transferases Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain 11
PhoU-like TrkA C-terminal domain-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
YjeF N-terminal domain-like Ribokinase-like 11
N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 L30e-like 11
Globin-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Translation proteins EF-G C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
ATP-dependent DNA ligase DNA-binding domain DNA ligase/mRNA capping enzyme, catalytic domain 11
Class II aaRS and biotin synthetases C-terminal domain of ProRS 11
MoeA N-terminal region -like Periplasmic binding protein-like II 11
Uracil-DNA glycosylase-like PUA domain-like 11
lambda repressor-like DNA-binding domains AraD/HMP-PK domain-like 11
Smc hinge domain Tropomyosin 11
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 11
lambda repressor-like DNA-binding domains CBS-domain pair 11

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