Domain combination pairs in Gallus gallus 58 (pseudogene)

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

• For a list of unique full length architectures for this genome click here (can be slow).

Graph of adjacent domain pairs.

• Remove domain pairs for which there is already a structure in the PDB
• Remove domain pairs which occur in any other genomes (slow)
• Remove domain pairs which are not adjacent to each other
• Remove different strains from the list of genomes compared to

Jump to [ Top of page · Add/remove domain pairs · Domain combination pairs ]

Change the list of genome two-letter codes in the 'Include genomes' box to include domain-pairs from those genomes.
Change the list of genomes in the 'Exclude genomes' box to exclude domain-pairs from those genomes.
List of all two-letter genome codes.

Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes ]

Domain combination pairs

212 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N)	Superfamily (C)	Number of occurrances	Number unique
Fibronectin type III	Fibronectin type III	24	19
Immunoglobulin	Immunoglobulin	21	19
Fibronectin type III	Immunoglobulin	20	15
Cadherin-like	Cadherin-like	15	10
beta-beta-alpha zinc fingers	beta-beta-alpha zinc fingers	14	11
SRCR-like	SRCR-like	10	7
EGF/Laminin	EGF/Laminin	10	10
dUTPase-like	Acid proteases	7	1
FYVE/PHD zinc finger	FYVE/PHD zinc finger	7	4
Actin-like ATPase domain	Actin-like ATPase domain	5	1
FYVE/PHD zinc finger	RING/U-box	5	4
YWTD domain	EGF/Laminin	5	5
Serine protease inhibitors	Serine protease inhibitors	5	4
C-type lectin-like	C-type lectin-like	5	4
YWTD domain	YWTD domain	5	5
PH domain-like	PH domain-like	4	4
DBL homology domain (DH-domain)	PH domain-like	4	4
Complement control module/SCR domain	Complement control module/SCR domain	4	3
P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	4	4
Glucocorticoid receptor-like (DNA-binding domain)	Glucocorticoid receptor-like (DNA-binding domain)	4	3
Second domain of FERM	PH domain-like	3	3
PDZ domain-like	PDZ domain-like	3	3
KRAB domain (Kruppel-associated box)	beta-beta-alpha zinc fingers	3	2
Sema domain	Plexin repeat	3	3
NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	3	1
Ubiquitin-like	Ras GEF	3	2
Growth factor receptor domain	Growth factor receptor domain	3	3
ARM repeat	ARM repeat	3	3
Serine protease inhibitors	FnI-like domain	3	3
(Phosphotyrosine protein) phosphatases II	(Phosphotyrosine protein) phosphatases II	3	1
EGF/Laminin	Growth factor receptor domain	3	3
Voltage-gated potassium channels	Voltage-gated potassium channels	3	3
Ubiquitin-like	Second domain of FERM	3	3
"Winged helix" DNA-binding domain	PDZ domain-like	2	2
Leukotriene A4 hydrolase N-terminal domain	Metalloproteases ("zincins"), catalytic domain	2	1
Nucleic acid-binding proteins	P-loop containing nucleoside triphosphate hydrolases	2	2
Nucleotidyltransferase	PAP/OAS1 substrate-binding domain	2	1
MHC antigen-recognition domain	Immunoglobulin	2	1
WWE domain	ADP-ribosylation	2	2
PH domain-like	SH3-domain	2	2
Ypt/Rab-GAP domain of gyp1p	Ypt/Rab-GAP domain of gyp1p	2	1
Complement control module/SCR domain	Spermadhesin, CUB domain	2	2
C2 domain (Calcium/lipid-binding domain, CaLB)	FabD/lysophospholipase-like	2	1
Tudor/PWWP/MBT	Tudor/PWWP/MBT	2	2
Plexin repeat	E set domains	2	2
PH domain-like	Wiscott-Aldrich syndrome protein, WASP, C-terminal domain	2	1
DBL homology domain (DH-domain)	PDZ domain-like	2	2
PH domain-like	PDZ domain-like	2	2
Myosin rod fragments	Myosin rod fragments	2	2
Cysteine-rich domain	Cysteine-rich domain	2	2
Ricin B-like lectins	C-type lectin-like	2	2
Ubiquitin-like	ARM repeat	2	2
Lipovitellin-phosvitin complex; beta-sheet shell regions	Lipovitellin-phosvitin complex, superhelical domain	2	2
Sema domain	E set domains	2	2
PH domain-like	Cyclophilin-like	2	1
P-loop containing nucleoside triphosphate hydrolases	FtsH protease domain-like	2	2
Ubiquitin-like	PH domain-like	2	2
SH3-domain	DBL homology domain (DH-domain)	2	2
Concanavalin A-like lectins/glucanases	EGF/Laminin	2	2
DBL homology domain (DH-domain)	"Winged helix" DNA-binding domain	2	2
Eukaryotic type KH-domain (KH-domain type I)	Eukaryotic type KH-domain (KH-domain type I)	2	2
Somatomedin B domain	Alkaline phosphatase-like	2	2
TPR-like	Ran binding protein zinc finger-like	2	1
Immunoglobulin	YVTN repeat-like/Quinoprotein amine dehydrogenase	2	2
(Trans)glycosidases	(Trans)glycosidases	2	2
Homeodomain-like	Homeodomain-like	2	2
Wiscott-Aldrich syndrome protein, WASP, C-terminal domain	Wiscott-Aldrich syndrome protein, WASP, C-terminal domain	2	1
Ran binding protein zinc finger-like	PH domain-like	2	1
E set domains	E set domains	2	2
Ankyrin repeat	Ankyrin repeat	2	1
"Winged helix" DNA-binding domain	"Winged helix" DNA-binding domain	2	2
Galactose mutarotase-like	(Trans)glycosidases	2	1
Ankyrin repeat	Eukaryotic type KH-domain (KH-domain type I)	1	1
TNF receptor-like	DEATH domain	1	1
Metal cation-transporting ATPase, ATP-binding domain N	HAD-like	1	1
CoA-dependent acyltransferases	(Trans)glycosidases	1	1
Chromo domain-like	Chromo domain-like	1	1
HR1 repeat	HR1 repeat	1	1
Glutathione synthetase ATP-binding domain-like	ClpP/crotonase	1	1
C2 domain (Calcium/lipid-binding domain, CaLB)	Protein kinase-like (PK-like)	1	1
Macro domain-like	Zn-dependent exopeptidases	1	1
PH domain-like	PLC-like phosphodiesterases	1	1
Ubiquitin-like	C2 domain (Calcium/lipid-binding domain, CaLB)	1	1
RNA-binding domain, RBD	RNA-binding domain, RBD	1	1
Metalloproteases ("zincins"), catalytic domain	Blood coagulation inhibitor (disintegrin)	1	1
ITPase-like	"Winged helix" DNA-binding domain	1	1
P-loop containing nucleoside triphosphate hydrolases	Fzo-like conserved region	1	1
Myosin rod fragments	Tropomyosin	1	1
PH domain-like	"Winged helix" DNA-binding domain	1	1
EGF/Laminin	TB module/8-cys domain	1	1
PreATP-grasp domain	Glutathione synthetase ATP-binding domain-like	1	1
C2 domain (Calcium/lipid-binding domain, CaLB)	ARM repeat	1	1
ENTH/VHS domain	GAT-like domain	1	1
UBA-like	P-loop containing nucleoside triphosphate hydrolases	1	1
Spectrin repeat	Spectrin repeat	1	1
Single hybrid motif	ClpP/crotonase	1	1
Metal cation-transporting ATPase, ATP-binding domain N	Calcium ATPase, transmembrane domain M	1	1
N-terminal nucleophile aminohydrolases (Ntn hydrolases)	SIS domain	1	1
6-phosphogluconate dehydrogenase C-terminal domain-like	UDP-glucose/GDP-mannose dehydrogenase C-terminal domain	1	1
PGBD-like	Hemopexin-like domain	1	1
HR1 repeat	C2 domain (Calcium/lipid-binding domain, CaLB)	1	1
P-loop containing nucleoside triphosphate hydrolases	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	1	1
Transducin (alpha subunit), insertion domain	P-loop containing nucleoside triphosphate hydrolases	1	1
C2 domain (Calcium/lipid-binding domain, CaLB)	C2 domain (Calcium/lipid-binding domain, CaLB)	1	1
Cysteine-rich domain	Protein kinase-like (PK-like)	1	1
Chromo domain-like	P-loop containing nucleoside triphosphate hydrolases	1	1
WW domain	Hect, E3 ligase catalytic domain	1	1
Metalloproteases ("zincins"), catalytic domain	TSP-1 type 1 repeat	1	1
beta-beta-alpha zinc fingers	Homeodomain-like	1	1
PreATP-grasp domain	PreATP-grasp domain	1	1
RUN domain-like	Ypt/Rab-GAP domain of gyp1p	1	1
Cysteine proteinases	Transglutaminase, two C-terminal domains	1	1
Single hybrid motif	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex	1	1
Rudiment single hybrid motif	Single hybrid motif	1	1
Macro domain-like	WWE domain	1	1
WD40 repeat-like	ARM repeat	1	1
NHL repeat	YVTN repeat-like/Quinoprotein amine dehydrogenase	1	1
NAD(P)-binding Rossmann-fold domains	6-phosphogluconate dehydrogenase C-terminal domain-like	1	1
Kringle-like	C-type lectin-like	1	1
Ankyrin repeat	POZ domain	1	1
P-loop containing nucleoside triphosphate hydrolases	Myosin rod fragments	1	1
PH domain-like	Ras GEF	1	1
Carboxypeptidase regulatory domain-like	NHL repeat	1	1
Growth factor receptor domain	vWA-like	1	1
ARM repeat	Cysteine proteinases	1	1
Somatomedin B domain	Somatomedin B domain	1	1
PH domain-like	EF-hand	1	1
Sialidases	EGF/Laminin	1	1
Rap/Ran-GAP	PDZ domain-like	1	1
P-loop containing nucleoside triphosphate hydrolases	Prefoldin	1	1
TPR-like	PH domain-like	1	1
Glutathione synthetase ATP-binding domain-like	Glutathione synthetase ATP-binding domain-like	1	1
SH2 domain	SH2 domain	1	1
TSP-1 type 1 repeat	TSP-1 type 1 repeat	1	1
"Winged helix" DNA-binding domain	S-adenosyl-L-methionine-dependent methyltransferases	1	1
Plexin repeat	TSP-1 type 1 repeat	1	1
"Winged helix" DNA-binding domain	FYVE/PHD zinc finger	1	1
PR-1-like	Crisp domain-like	1	1
EGF/Laminin	vWA-like	1	1
HR1 repeat	Protein kinase-like (PK-like)	1	1
SH3-domain	SH3-domain	1	1
Sema domain	TSP-1 type 1 repeat	1	1
Glutathione synthetase ATP-binding domain-like	Carbamoyl phosphate synthetase, large subunit connection domain	1	1
P-loop containing nucleoside triphosphate hydrolases	Tropomyosin	1	1
Sema domain	Sema domain	1	1
Kelch motif	C-type lectin-like	1	1
Macro domain-like	ADP-ribosylation	1	1
NAD(P)-binding Rossmann-fold domains	UDP-glucose/GDP-mannose dehydrogenase C-terminal domain	1	1
ThrRS/AlaRS common domain	Class II aaRS and biotin synthetases	1	1
EGF/Laminin	NHL repeat	1	1
Nucleotide-binding domain	FAD-linked reductases, C-terminal domain	1	1
Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	1	1
Kringle-like	Trypsin-like serine proteases	1	1
Tubulin nucleotide-binding domain-like	Tubulin C-terminal domain-like	1	1
alpha/beta-Hydrolases	alpha/beta-Hydrolases	1	1
Immunoglobulin	Toll/Interleukin receptor TIR domain	1	1
Flavoproteins	Riboflavin synthase domain-like	1	1
(Trans)glycosidases	Glycosyl hydrolase domain	1	1
Kelch motif	EGF/Laminin	1	1
ARM repeat	Concanavalin A-like lectins/glucanases	1	1
PreATP-grasp domain	Carbamoyl phosphate synthetase, large subunit connection domain	1	1
Calcium ATPase, transmembrane domain M	HAD-like	1	1
P-loop containing nucleoside triphosphate hydrolases	Translation proteins	1	1
TPR-like	RNA-binding domain, RBD	1	1
Macro domain-like	Macro domain-like	1	1
LDL receptor-like module	Trypsin-like serine proteases	1	1
P-loop containing nucleoside triphosphate hydrolases	Phosphoglycerate mutase-like	1	1
Glutathione synthetase ATP-binding domain-like	Rudiment single hybrid motif	1	1
Translation proteins	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	1	1
WW domain	WW domain	1	1
Intermediate filament protein, coiled coil region	Prefoldin	1	1
Ricin B-like lectins	Kringle-like	1	1
WD40 repeat-like	SNARE fusion complex	1	1
PGBD-like	Metalloproteases ("zincins"), catalytic domain	1	1
Glutathione synthetase ATP-binding domain-like	Single hybrid motif	1	1
THUMP domain-like	S-adenosyl-L-methionine-dependent methyltransferases	1	1
Saposin	Saposin	1	1
EGF/Laminin	Carboxypeptidase regulatory domain-like	1	1
Growth factor receptor domain	TB module/8-cys domain	1	1
Metalloproteases ("zincins"), catalytic domain	Hemopexin-like domain	1	1
CoA-dependent acyltransferases	Glycosyl hydrolase domain	1	1
ITPase-like	S-adenosyl-L-methionine-dependent methyltransferases	1	1
Cysteine-rich domain	GTPase activation domain, GAP	1	1
Periplasmic binding protein-like I	Periplasmic binding protein-like II	1	1
Aldolase	AFP III-like domain	1	1
EF-hand	PLC-like phosphodiesterases	1	1
PH domain-like	Cysteine-rich domain	1	1
EGF/Laminin	YVTN repeat-like/Quinoprotein amine dehydrogenase	1	1
DNA-binding domain	SET domain	1	1
Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit	P-loop containing nucleoside triphosphate hydrolases	1	1
E set domains	Cysteine proteinases	1	1
Carboxypeptidase regulatory domain-like	YVTN repeat-like/Quinoprotein amine dehydrogenase	1	1
ABC transporter transmembrane region	P-loop containing nucleoside triphosphate hydrolases	1	1
Family A G protein-coupled receptor-like	Family A G protein-coupled receptor-like	1	1
EF-hand	Rhomboid-like	1	1
GroES-like	GroES-like	1	1
Intermediate filament protein, coiled coil region	Intermediate filament protein, coiled coil region	1	1
POZ domain	Kelch motif	1	1
TPR-like	TPR-like	1	1
ARM repeat	Ankyrin repeat	1	1
BRK domain-like	BRK domain-like	1	1
Rudiment single hybrid motif	ClpP/crotonase	1	1
GroES-like	NAD(P)-binding Rossmann-fold domains	1	1
S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain	1	1
L domain-like	L domain-like	1	1
Fibronectin type III	Concanavalin A-like lectins/glucanases	1	1
C-type lectin-like	EGF/Laminin	1	1
SH3-domain	SH2 domain	1	1
P-loop containing nucleoside triphosphate hydrolases	PH domain-like	1	1
ClpP/crotonase	ClpP/crotonase	1	1
E set domains	Transglutaminase, two C-terminal domains	1	1
Kringle-like	Kringle-like	1	1

Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes · Domain combination pairs ]