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Domain combination pairs in Rattus norvegicus 58 (pseudogenes)

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

257 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 2171
HMG-box HMG-box 673
Actin-like ATPase domain Actin-like ATPase domain 625
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 592
Ribosomal protein L6 Ribosomal protein L6 571
RNA-binding domain, RBD RNA-binding domain, RBD 498
TRAF domain-like POZ domain 492
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 395
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 352
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 352
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 341
GroEL equatorial domain-like GroEL-intermediate domain like 274
GroEL-intermediate domain like GroEL apical domain-like 263
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 266
beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers 2618
GroEL equatorial domain-like GroEL apical domain-like 263
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 245
Ubiquitin-like Zn-binding ribosomal proteins 221
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 193
P-loop containing nucleoside triphosphate hydrolases Translation proteins 173
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 174
EF-hand EF-hand 142
Homeodomain-like Homeodomain-like 131
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 132
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 121
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 121
PLP-binding barrel Alanine racemase C-terminal domain-like 112
Thioredoxin-like GST C-terminal domain-like 111
P-loop containing nucleoside triphosphate hydrolases RNA-binding domain, RBD 114
Cadherin-like Cadherin-like 114
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 91
Cyclophilin-like TPR-like 91
Glucocorticoid receptor-like (DNA-binding domain) Glucocorticoid receptor-like (DNA-binding domain) 86
Immunoglobulin Immunoglobulin 76
Retrovirus capsid dimerization domain-like beta-beta-alpha zinc fingers 62
Chromo domain-like Chromo domain-like 61
SAICAR synthase-like N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 61
Enolase N-terminal domain-like Enolase C-terminal domain-like 61
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 61
PK beta-barrel domain-like PK C-terminal domain-like 61
MHC antigen-recognition domain Immunoglobulin 61
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 63
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 61
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 62
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 61
GroES-like NAD(P)-binding Rossmann-fold domains 61
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 52
Nucleic acid-binding proteins Translation proteins SH3-like domain 52
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 52
Chaperone J-domain HSP40/DnaJ peptide-binding domain 52
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 52
Ribosomal protein S5 domain 2-like EF-G C-terminal domain-like 52
Actin depolymerizing proteins Actin depolymerizing proteins 53
Intermediate filament protein, coiled coil region Intermediate filament protein, coiled coil region 55
RNA-binding domain, RBD Ran binding protein zinc finger-like 52
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 52
Translation proteins EF-G C-terminal domain-like 41
EF-G C-terminal domain-like EF-G C-terminal domain-like 41
Translation proteins Ribosomal protein S5 domain 2-like 41
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 43
SRCR-like SRCR-like 44
POZ domain Skp1 dimerisation domain-like 41
RING/U-box TRAF domain-like 33
TPR-like TPR-like 33
N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 Translational machinery components 31
Nucleic acid-binding proteins eIF-2-alpha, C-terminal domain 31
eIF2alpha middle domain-like eIF-2-alpha, C-terminal domain 31
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 33
Glucocorticoid receptor-like (DNA-binding domain) Nuclear receptor ligand-binding domain 32
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 32
Transcription factor IIA (TFIIA), alpha-helical domain Transcription factor IIA (TFIIA), beta-barrel domain 31
P-loop containing nucleoside triphosphate hydrolases SMAD/FHA domain 32
Nucleic acid-binding proteins eIF2alpha middle domain-like 31
POZ domain Kelch motif 32
EGF/Laminin EGF/Laminin 33
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 32
Periplasmic binding protein-like I Calcium ATPase, transmembrane domain M 33
Concanavalin A-like lectins/glucanases Concanavalin A-like lectins/glucanases 31
Metalloproteases ("zincins"), catalytic domain Blood coagulation inhibitor (disintegrin) 32
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 32
N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 L30e-like 31
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 31
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 32
Translational machinery components L30e-like 31
CHY zinc finger-like RING/U-box 21
Eukaryotic type KH-domain (KH-domain type I) Eukaryotic type KH-domain (KH-domain type I) 22
Zinc hairpin stack RING/U-box 21
Tudor/PWWP/MBT S-adenosyl-L-methionine-dependent methyltransferases 22
NTF2-like RNA-binding domain, RBD 22
Immunoglobulin Concanavalin A-like lectins/glucanases 22
Thioredoxin-like Thioredoxin-like 22
Fibronectin type III Fibronectin type III 22
Nucleotidyltransferase PAP/OAS1 substrate-binding domain 22
Family A G protein-coupled receptor-like Family A G protein-coupled receptor-like 21
Ubiquitin-like PH domain-like 22
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 21
F-box domain WD40 repeat-like 21
GTPase activation domain, GAP GTPase activation domain, GAP 21
SH3-domain SH2 domain 22
CHY zinc finger-like Zinc hairpin stack 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 21
SH3-domain SH3-domain 22
RING/U-box Cyclophilin-like 21
NSFL1 (p97 ATPase) cofactor p47, SEP domain Ubiquitin-like 22
Cullin repeat-like Cullin homology domain 22
Complement control module/SCR domain Complement control module/SCR domain 22
Creatinase/aminopeptidase "Winged helix" DNA-binding domain 22
RING/U-box NRDP1 C-terminal domain-like 11
C-terminal, gelsolin-like domain of Sec23/24 VHP, Villin headpiece domain 11
beta-beta-alpha zinc fingers WW domain 11
L27 domain PDZ domain-like 11
DEATH domain P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease H-like RuvA domain 2-like 11
SH3-domain P-loop containing nucleoside triphosphate hydrolases 11
beta-beta-alpha zinc fingers Ribonuclease H-like 11
Putative isomerase YbhE WD40 repeat-like 11
Taf5 N-terminal domain-like WD40 repeat-like 11
WW domain FKBP-like 11
FYVE/PHD zinc finger FYVE/PHD zinc finger 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Class II aaRS and biotin synthetases Class II aaRS ABD-related 11
Inosine monophosphate dehydrogenase (IMPDH) Inosine monophosphate dehydrogenase (IMPDH) 11
GINS helical bundle-like PriA/YqbF domain 11
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 11
GroEL-intermediate domain like GroEL-intermediate domain like 11
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
RING/U-box UBA-like 11
Ubiquitin-like Second domain of FERM 11
beta-sandwich domain of Sec23/24 Helical domain of Sec23/24 11
B-box zinc-binding domain Concanavalin A-like lectins/glucanases 11
Glucocorticoid receptor-like (DNA-binding domain) SH3-domain 11
Cysteine proteinases Cysteine proteinases 11
Nitric oxide (NO) synthase oxygenase domain Riboflavin synthase domain-like 11
PDZ domain-like SH3-domain 11
DEATH domain RNI-like 11
WD40 repeat-like WD40 repeat-like 11
Nucleic acid-binding proteins Nucleic acid-binding proteins 11
PH domain-like SH2 domain 11
Zn-finger domain of Sec23/24 Helical domain of Sec23/24 11
MFS general substrate transporter Kazal-type serine protease inhibitors 11
Single hybrid motif Single hybrid motif 11
P-loop containing nucleoside triphosphate hydrolases Bromodomain 11
UBA-like NSFL1 (p97 ATPase) cofactor p47, SEP domain 11
FYSH domain Hypothetical protein AF0491, middle domain 11
PAP/OAS1 substrate-binding domain PAP/Archaeal CCA-adding enzyme, C-terminal domain 11
p53-like transcription factors SH2 domain 11
Flavoproteins Riboflavin synthase domain-like 11
RuvA domain 2-like Nucleic acid-binding proteins 11
Nitric oxide (NO) synthase oxygenase domain Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Zinc-binding domain of translation initiation factor 2 beta ARM repeat 11
CAD & PB1 domains UBA-like 11
Putative DNA-binding domain Cation efflux protein transmembrane domain-like 11
P-loop containing nucleoside triphosphate hydrolases Myosin rod fragments 11
TRAF domain-like TRAF domain-like 11
P-loop containing nucleoside triphosphate hydrolases RNI-like 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
beta-sandwich domain of Sec23/24 Zn-finger domain of Sec23/24 11
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 11
RING/U-box Cysteine proteinases 11
Tex N-terminal region-like Ribonuclease H-like 11
Heat shock protein 70kD (HSP70), C-terminal subdomain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Spermadhesin, CUB domain LCCL domain 11
Myosin S1 fragment, N-terminal domain Tropomyosin 11
SH2 domain Protein kinase-like (PK-like) 11
SMAD MH1 domain SMAD/FHA domain 11
Elongation factor TFIIS domain 2 Zinc beta-ribbon 11
Myosin rod fragments Tropomyosin 11
Nucleotide-diphospho-sugar transferases Ricin B-like lectins 11
SH3-domain Protein kinase-like (PK-like) 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
RNA-binding domain, RBD DPP6 N-terminal domain-like 11
CCCH zinc finger RING/U-box 11
POZ domain beta-beta-alpha zinc fingers 11
Second domain of FERM PH domain-like 11
PRTase-like Ribulose-phoshate binding barrel 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
Cap-Gly domain Cap-Gly domain 11
vWA-like C-terminal, gelsolin-like domain of Sec23/24 11
Eukaryotic RPB5 N-terminal domain RPB5-like RNA polymerase subunit 11
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 11
Alkaline phosphatase-like Alkaline phosphatase-like 11
Cullin homology domain "Winged helix" DNA-binding domain 11
lambda repressor-like DNA-binding domains Homeodomain-like 11
Nucleotidyltransferase PAP/Archaeal CCA-adding enzyme, C-terminal domain 11
RNA-binding domain, RBD PABC (PABP) domain 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Arp2/3 complex subunits Arp2/3 complex subunits 11
Nitric oxide (NO) synthase oxygenase domain Flavoproteins 11
L domain-like L domain-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
L27 domain SH3-domain 11
Rap/Ran-GAP Rap/Ran-GAP 11
Translation initiation factor 2 beta, aIF2beta, N-terminal domain ARM repeat 11
Transducin (alpha subunit), insertion domain P-loop containing nucleoside triphosphate hydrolases 11
vWA-like Helical domain of Sec23/24 11
Calponin-homology domain, CH-domain EB1 dimerisation domain-like 11
beta-sandwich domain of Sec23/24 C-terminal, gelsolin-like domain of Sec23/24 11
Kelch motif Kelch motif 11
TRAF domain-like NRDP1 C-terminal domain-like 11
Cyclin-like Cyclin-like 11
Myosin rod fragments Myosin rod fragments 11
Cullin repeat-like "Winged helix" DNA-binding domain 11
UBA-like Ubiquitin-like 11
SEA domain Trypsin-like serine proteases 11
RING/U-box RING/U-box 11
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
TPR-like Protein prenylyltransferase 11
HAD-like Calcium ATPase, transmembrane domain M 11
Zn-finger domain of Sec23/24 vWA-like 11
RNA-binding domain, RBD Retrovirus zinc finger-like domains 11
WW domain WW domain 11
CAD & PB1 domains RING/U-box 11
PDZ domain-like P-loop containing nucleoside triphosphate hydrolases 11
Thiolase-like Thiolase-like 11
beta-sandwich domain of Sec23/24 vWA-like 11
Protein prenylyltransferase Rab geranylgeranyltransferase alpha-subunit, insert domain 11
RING/U-box WD40 repeat-like 11
SNARE-like Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 11
FYVE/PHD zinc finger S-adenosyl-L-methionine-dependent methyltransferases 11
P-loop containing nucleoside triphosphate hydrolases Tropomyosin 11
Protein prenylyltransferase L domain-like 11
4Fe-4S ferredoxins P-loop containing nucleoside triphosphate hydrolases 11
Rap30/74 interaction domains "Winged helix" DNA-binding domain 11
Helical domain of Sec23/24 C-terminal, gelsolin-like domain of Sec23/24 11
Plakin repeat Plakin repeat 11
SET domain RuBisCo LSMT C-terminal, substrate-binding domain 11
PAZ domain Ribonuclease H-like 11
SMAD/FHA domain RING/U-box 11
HydB/Nqo4-like HydB/Nqo4-like 11
Ubiquitin-like SH2 domain 11
Ribonuclease H-like Nucleic acid-binding proteins 11
BAR/IMD domain-like SH3-domain 11
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 11
TRAF domain-like WD40 repeat-like 11
Myosin S1 fragment, N-terminal domain Myosin rod fragments 11
Single hybrid motif CoA-dependent acyltransferases 11
beta-lactamase/transpeptidase-like Ankyrin repeat 11
GTPase activation domain, GAP SH3-domain 11
Actin depolymerizing proteins VHP, Villin headpiece domain 11
UBC-like UBA-like 11
RING/U-box Ankyrin repeat 11
P-loop containing nucleoside triphosphate hydrolases Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 11
Zn-finger domain of Sec23/24 C-terminal, gelsolin-like domain of Sec23/24 11
Myosin S1 fragment, N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
SNARE fusion complex SNARE fusion complex 11
Rab geranylgeranyltransferase alpha-subunit, insert domain L domain-like 11
L domain-like Immunoglobulin 11
Immunoglobulin Protein kinase-like (PK-like) 11
Actin depolymerizing proteins C-terminal, gelsolin-like domain of Sec23/24 11
Tex N-terminal region-like RuvA domain 2-like 11
UBA-like UBA-like 11
L27 domain P-loop containing nucleoside triphosphate hydrolases 11

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