Domain combination pairs in Campylobacter jejuni subsp. jejuni 00-2538 and not in the PDB

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

• For a list of unique full length architectures for this genome click here (can be slow).

Graph of adjacent domain pairs.

• Add back in domain pairs for which there is already a structure in the PDB
• Remove domain pairs which occur in any other genomes (slow)
• Remove domain pairs which are not adjacent to each other
• Remove different strains from the list of genomes compared to

Jump to [ Top of page · Add/remove domain pairs · Domain combination pairs ]

Change the list of genome two-letter codes in the 'Include genomes' box to include domain-pairs from those genomes.
Change the list of genomes in the 'Exclude genomes' box to exclude domain-pairs from those genomes.
List of all two-letter genome codes.

Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes ]

Domain combination pairs

103 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N)	Superfamily (C)	Number of occurrances	Number unique
CheC-like	Surface presentation of antigens (SPOA)	2	2
HMA, heavy metal-associated domain	HAD-like	2	2
Chaperone J-domain	HSP40/DnaJ peptide-binding domain	2	2
HMA, heavy metal-associated domain	Calcium ATPase, transduction domain A	2	2
HMA, heavy metal-associated domain	Calcium ATPase, transmembrane domain M	2	2
CheW-like	CheY-like	2	2
Translation proteins	"Winged helix" DNA-binding domain	1	1
PYP-like sensor domain (PAS domain)	PYP-like sensor domain (PAS domain)	1	1
HD-domain/PDEase-like	HD-domain/PDEase-like	1	1
Chorismate mutase II	Periplasmic binding protein-like II	1	1
TPR-like	HCP-like	1	1
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	CoaB-like	1	1
P-loop containing nucleoside triphosphate hydrolases	SMR domain-like	1	1
Ribonuclease PH domain 2-like	Nucleic acid-binding proteins	1	1
Histidine-containing phosphotransfer domain, HPT domain	CheY-like	1	1
SirA-like	DsrEFH-like	1	1
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)	ThrRS/AlaRS common domain	1	1
Chaperone J-domain	DnaJ/Hsp40 cysteine-rich domain	1	1
Fe-S cluster assembly (FSCA) domain-like	P-loop containing nucleoside triphosphate hydrolases	1	1
Rubredoxin-like	Rubredoxin-like	1	1
FAD-linked oxidoreductase	ALDH-like	1	1
Lysozyme-like	LysM domain	1	1
FliG	FliG	1	1
MFS general substrate transporter	Acetyl-CoA synthetase-like	1	1
Ribosomal protein S5 domain 2-like	HSP90 C-terminal domain	1	1
MFS general substrate transporter	Glycerol-3-phosphate (1)-acyltransferase	1	1
GIY-YIG endonuclease	C-terminal UvrC-binding domain of UvrB	1	1
HAD-like	Ribosomal protein S5 domain 2-like	1	1
FAD-binding/transporter-associated domain-like	alpha-helical ferredoxin	1	1
Acylphosphatase/BLUF domain-like	YrdC/RibB	1	1
Dihydropteroate synthetase-like	Nitrite and sulphite reductase 4Fe-4S domain-like	1	1
Histidine-containing phosphotransfer domain, HPT domain	CheW-like	1	1
Translation initiation factor IF3, N-terminal domain	Translation initiation factor IF3, C-terminal domain	1	1
HCP-like	UDP-Glycosyltransferase/glycogen phosphorylase	1	1
FMN-binding split barrel	FMN-binding split barrel	1	1
CBS-domain pair	FAD-binding/transporter-associated domain-like	1	1
Chorismate mutase II	ACT-like	1	1
Creatinase/prolidase N-terminal domain	Creatinase/prolidase N-terminal domain	1	1
post-HMGL domain-like	Single hybrid motif	1	1
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	ACT-like	1	1
Homodimeric domain of signal transducing histidine kinase	CheY-like	1	1
HisI-like	all-alpha NTP pyrophosphatases	1	1
Rhodanese/Cell cycle control phosphatase	P-loop containing nucleoside triphosphate hydrolases	1	1
Ribosomal protein S5 domain 2-like	Type II DNA topoisomerase	1	1
Nucleotidyltransferase	TGS-like	1	1
Type II DNA topoisomerase	GyrA/ParC C-terminal domain-like	1	1
OMPA-like	OmpA-like	1	1
DsbB-like	Calcium-dependent phosphotriesterase	1	1
Barwin-like endoglucanases	Sporulation related repeat	1	1
MetI-like	MetI-like	1	1
Subtilisin-like	Autotransporter	1	1
FAD-linked oxidases, C-terminal domain	alpha-helical ferredoxin	1	1
YbaK/ProRS associated domain	Class II aaRS ABD-related	1	1
SufE/NifU	Fe-S cluster assembly (FSCA) domain-like	1	1
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	Type II DNA topoisomerase	1	1
UDP-Glycosyltransferase/glycogen phosphorylase	HAD-like	1	1
Nucleotidyltransferase	ACT-like	1	1
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	HSP90 C-terminal domain	1	1
S-adenosyl-L-methionine-dependent methyltransferases	NAD(P)-binding Rossmann-fold domains	1	1
Glycerol-3-phosphate (1)-acyltransferase	Acetyl-CoA synthetase-like	1	1
PYP-like sensor domain (PAS domain)	Methyl-accepting chemotaxis protein (MCP) signaling domain	1	1
Class II aaRS and biotin synthetases	Translation proteins	1	1
Prokaryotic type I DNA topoisomerase	Zinc beta-ribbon	1	1
L,D-transpeptidase catalytic domain-like	NTF2-like	1	1
TGS-like	ACT-like	1	1
Eukaryotic type KH-domain (KH-domain type I)	HD-domain/PDEase-like	1	1
lambda repressor-like DNA-binding domains	P-loop containing nucleoside triphosphate hydrolases	1	1
Subtilisin-like	Pectin lyase-like	1	1
Ribosomal protein S5 domain 2-like	Nucleic acid-binding proteins	1	1
Folate-binding domain	P-loop containing nucleoside triphosphate hydrolases	1	1
PUA domain-like	Ribosomal protein S5 domain 2-like	1	1
Ribokinase-like	Nucleotidylyl transferase	1	1
Alpha-L RNA-binding motif	S-adenosyl-L-methionine-dependent methyltransferases	1	1
Class I glutamine amidotransferase-like	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain	1	1
YrdC/RibB	RibA-like	1	1
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha)	Thioredoxin-like	1	1
C-terminal UvrC-binding domain of UvrB	RuvA domain 2-like	1	1
ACT-like	Formyltransferase	1	1
Pectin lyase-like	Autotransporter	1	1
Aldolase	Single hybrid motif	1	1
Histidine-containing phosphotransfer domain, HPT domain	Homodimeric domain of signal transducing histidine kinase	1	1
CheY-like	Homeodomain-like	1	1
NagB/RpiA/CoA transferase-like	alpha-helical ferredoxin	1	1
GroEL equatorial domain-like	GroEL equatorial domain-like	1	1
ADC synthase	D-aminoacid aminotransferase-like PLP-dependent enzymes	1	1
GIY-YIG endonuclease	RuvA domain 2-like	1	1
HD-domain/PDEase-like	TGS-like	1	1
HD-domain/PDEase-like	ACT-like	1	1
TPR-like	UDP-Glycosyltransferase/glycogen phosphorylase	1	1
Class II aaRS and biotin synthetases	YbaK/ProRS associated domain	1	1
SIS domain	CBS-domain pair	1	1
Actin-like ATPase domain	Heat shock protein 70kD (HSP70), C-terminal subdomain	1	1
N-terminal domain of DnaB helicase	P-loop containing nucleoside triphosphate hydrolases	1	1
P-loop containing nucleoside triphosphate hydrolases	Homeodomain-like	1	1
Multidrug resistance efflux transporter EmrE	Multidrug resistance efflux transporter EmrE	1	1
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	CheY-like	1	1
Nucleotide-diphospho-sugar transferases	Nucleotide-diphospho-sugar transferases	1	1
UbiD C-terminal domain-like	UbiD C-terminal domain-like	1	1
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)	Translation proteins	1	1
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain	Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain	1	1
Flagellar hook protein flgE	Flagellar hook protein flgE	1	1
Histidine-containing phosphotransfer domain, HPT domain	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	1	1
TerB-like	Chaperone J-domain	1	1

Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes · Domain combination pairs ]