Enzyme Commission (EC)
Each enzyme is allocated a four-digit EC number, the first three digits of which define the reaction catalysed and the fourth of which is a unique identifier (serial number). Each enzyme is also assigned a systematic name that uniquely defines the reaction catalysed. To navigate hierarchical structure of EC, we display all parental EC terms to the current EC term of interest ordered by their shortest distances to the current term. Also, only direct children EC terms of the current EC term are listed.
Structural Classification of Proteins (SCOP)
SCOP classifies evolutionary-related domains into
Superfamily level and
Family level. Accordingly, we have generated the domain-centric EC annotations for each of the three concepts at each of the two domain levels.
Structural Domain Enzyme Commission Ontology (SDEO)
As domain-centric ontology, SDEO only refers to those EC terms which are the most informative to annotate SCOP domains.
EC annotations for SCOP domains
For details, please visit
Documentation: EC annotations for SCOP domains. Therein, we provide several relevant files (
Data Availability) for the download, including an annotation file (i.e.,
Domain2EC.txt) and the corresponding ontology (i.e.,
SDEO.txt).
Supra-domain Enzyme Commission Ontology (SPEO)
As an extension, SPEO includes those EC terms which are the most informative to annotate supra-domains and individual SCOP domains at the
Superfamily level.
EC annotations for Supra-domains
For details, please visit
Documentation: EC annotations for Supra-domains. Therein, we provide several relevant files (
Data Availability) for the download, including a annotation file (i.e.,
SP2EC.txt) and an ontology (i.e.,
SPEO.txt). For the sake of being browsable, listed below are those supra-domains (single, dual, triple, quad).
Shortest distance to current term (+ for parents, - for children) |
EC term [EC ID] <#Children> |
(#SF|#FA) |
#Supra-domain (Single|Duplex|Triple) |
+ + + 3: | root [root] <6> |
+ + 2: | Transferases [2] <10> | (363|551) |
(398|460|240) |
+ 1: | Transferring one-carbon groups [2.1] <4> | (69|105) |
(78|71|28) |
0: | Methyltransferases [2.1.1] <249> | (50|84) |
(59|54|12) |
- 1: | (FADH(2)-oxidizing) [2.1.1.74] | (1|0) |
(1|0|0) |
- 1: | (Iso)eugenol O-methyltransferase [2.1.1.146] | (0|0) |
(1|1|0) |
- 1: | (RS)-1-benzyl-1,2,3,4-tetrahydroisoquinoline N-met [2.1.1.115] | (0|0) |
(0|0|0) |
- 1: | (RS)-norcoclaurine 6-O-methyltransferase [2.1.1.128] | (0|0) |
(0|0|0) |
- 1: | (S)-coclaurine-N-methyltransferase [2.1.1.140] | (0|0) |
(0|0|0) |
- 1: | (S)-scoulerine 9-O-methyltransferase [2.1.1.117] | (0|0) |
(0|0|0) |
- 1: | (S)-tetrahydroprotoberberine N-methyltransferase [2.1.1.122] | (0|0) |
(0|0|0) |
- 1: | 10-hydroxydihydrosanguinarine 10-O-methyltransfera [2.1.1.119] | (0|0) |
(0|0|0) |
- 1: | 12-hydroxydihydrochelirubine 12-O-methyltransferas [2.1.1.120] | (0|0) |
(0|0|0) |
- 1: | 16S rRNA (adenine(1408)-N(1))-methyltransferase [2.1.1.180] | (0|0) |
(0|0|0) |
- 1: | 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-d [2.1.1.182] | (1|1) |
(1|0|0) |
- 1: | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase [2.1.1.198] | (1|1) |
(1|0|0) |
- 1: | 16S rRNA (cytidine(1409)-2'-O)-methyltransferase [2.1.1.227] | (0|0) |
(0|0|0) |
- 1: | 16S rRNA (cytosine(1402)-N(4))-methyltransferase [2.1.1.199] | (2|2) |
(2|1|0) |
- 1: | 16S rRNA (cytosine(1407)-C(5))-methyltransferase [2.1.1.178] | (1|1) |
(1|0|0) |
- 1: | 16S rRNA (cytosine(967)-C(5))-methyltransferase [2.1.1.176] | (2|2) |
(2|1|0) |
- 1: | 16S rRNA (guanine(1207)-N(2))-methyltransferase [2.1.1.172] | (1|1) |
(1|1|0) |
- 1: | 16S rRNA (guanine(1405)-N(7))-methyltransferase [2.1.1.179] | (0|0) |
(0|0|0) |
- 1: | 16S rRNA (guanine(1516)-N(2))-methyltransferase [2.1.1.242] | (0|0) |
(1|0|0) |
- 1: | 16S rRNA (guanine(527)-N(7))-methyltransferase [2.1.1.170] | (1|1) |
(1|0|0) |
- 1: | 16S rRNA (guanine(966)-N(2))-methyltransferase [2.1.1.171] | (0|0) |
(0|0|0) |
- 1: | 16S rRNA (uracil(1498)-N(3))-methyltransferase [2.1.1.193] | (2|2) |
(2|1|0) |
- 1: | 18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))-d [2.1.1.183] | (0|1) |
(0|0|0) |
- 1: | 2,4,7-trihydroxy-1,4-benzoxazin-3-one-glucoside 7- [2.1.1.241] | (0|0) |
(0|0|0) |
- 1: | 2,7,4'-trihydroxyisoflavanone 4'-O-methyltransfera [2.1.1.212] | (0|0) |
(1|1|0) |
- 1: | 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [2.1.1.201] | (1|1) |
(1|0|0) |
- 1: | 2-polyprenyl-6-hydroxyphenyl methylase [2.1.1.222] | (1|0) |
(1|0|0) |
- 1: | 21S rRNA (uridine(2791)-2'-O-)-methyltransferase [2.1.1.168] | (0|0) |
(0|0|0) |
- 1: | 23S rRNA (adenine(1618)-N(6))-methyltransferase [2.1.1.181] | (1|1) |
(1|0|0) |
- 1: | 23S rRNA (adenine(2085)-N(6))-dimethyltransferase [2.1.1.184] | (0|1) |
(0|0|0) |
- 1: | 23S rRNA (adenine(2503)-C(2))-methyltransferase [2.1.1.192] | (1|1) |
(1|0|0) |
- 1: | 23S rRNA (adenine(2503)-C(8))-methyltransferase [2.1.1.224] | (1|0) |
(1|0|0) |
- 1: | 23S rRNA (adenosine(1067)-2'-O)-methyltransferase [2.1.1.230] | (0|0) |
(0|0|0) |
- 1: | 23S rRNA (cytidine(1920)-2'-O)-methyltransferase [2.1.1.226] | (0|0) |
(0|0|0) |
- 1: | 23S rRNA (cytidine(2498)-2'-O)-methyltransferase [2.1.1.186] | (1|1) |
(1|0|0) |
- 1: | 23S rRNA (cytosine(1962)-C(5))-methyltransferase [2.1.1.191] | (2|2) |
(2|1|0) |
- 1: | 23S rRNA (guanine(1835)-N(2))-methyltransferase [2.1.1.174] | (1|1) |
(1|0|0) |
- 1: | 23S rRNA (guanine(2251)-2'-O)-methyltransferase [2.1.1.185] | (2|2) |
(2|1|0) |
- 1: | 23S rRNA (guanine(2445)-N(2))-methyltransferase [2.1.1.173] | (1|1) |
(1|1|0) |
- 1: | 23S rRNA (guanine(2535)-N(1))-methyltransferase [2.1.1.209] | (0|0) |
(0|0|0) |
- 1: | 23S rRNA (guanine(745)-N(1))-methyltransferase [2.1.1.187] | (0|0) |
(0|0|0) |
- 1: | 23S rRNA (guanine(748)-N(1))-methyltransferase [2.1.1.188] | (0|0) |
(0|0|0) |
- 1: | 23S rRNA (pseudouridine(1915)-N(3))-methyltransfer [2.1.1.177] | (1|1) |
(1|0|0) |
- 1: | 23S rRNA (uracil(1939)-C(5))-methyltransferase [2.1.1.190] | (2|2) |
(2|1|0) |
- 1: | 23S rRNA (uracil(747)-C(5))-methyltransferase [2.1.1.189] | (1|1) |
(1|0|0) |
- 1: | 23S rRNA (uridine(2479)-2'-O)-methyltransferase [2.1.1.208] | (0|0) |
(0|0|0) |
- 1: | 23S rRNA (uridine(2552)-2'-O-)-methyltransferase [2.1.1.166] | (1|1) |
(1|1|0) |
- 1: | 24-methylenesterol C-methyltransferase [2.1.1.143] | (0|0) |
(0|0|0) |
- 1: | 27S pre-rRNA (guanosine(2922)-2'-O-)-methyltransfe [2.1.1.167] | (0|0) |
(0|0|0) |
- 1: | 3'-demethylstaurosporine O-methyltransferase [2.1.1.139] | (0|0) |
(0|0|0) |
- 1: | 3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltran [2.1.1.116] | (0|0) |
(0|0|0) |
- 1: | 3,7-dimethylquercetin 4'-O-methyltransferase [2.1.1.83] | (0|0) |
(0|0|0) |
- 1: | 3-demethylubiquinol 3-O-methyltransferase [2.1.1.64] | (1|0) |
(1|0|0) |
- 1: | 3-hydroxy-16-methoxy-2,3-dihydrotabersonine N-meth [2.1.1.99] | (0|0) |
(0|0|0) |
- 1: | 3-hydroxyanthranilate 4-C-methyltransferase [2.1.1.97] | (0|0) |
(0|0|0) |
- 1: | 3-methylquercetin 7-O-methyltransferase [2.1.1.82] | (0|0) |
(0|0|0) |
- 1: | 5-hydroxyfuranocoumarin 5-O-methyltransferase [2.1.1.69] | (0|0) |
(0|0|0) |
- 1: | 5-methyltetrahydropteroyltriglutamate--homocystein [2.1.1.14] | (1|1) |
(1|1|0) |
- 1: | 5-pentadecatrienyl resorcinol O-methyltransferase [2.1.1.n7] | (0|0) |
(0|0|0) |
- 1: | 6-O-methylnorlaudanosoline 5'-O-methyltransferase [2.1.1.121] | (0|0) |
(0|0|0) |
- 1: | 6-hydroxymellein O-methyltransferase [2.1.1.108] | (0|0) |
(0|0|0) |
- 1: | 7-methylxanthosine synthase [2.1.1.158] | (0|0) |
(0|0|0) |
- 1: | 8-hydroxyfuranocoumarin 8-O-methyltransferase [2.1.1.70] | (0|0) |
(0|0|0) |
- 1: | 8-hydroxyquercetin 8-O-methyltransferase [2.1.1.88] | (0|0) |
(0|0|0) |
- 1: | Acetylserotonin O-methyltransferase [2.1.1.4] | (1|1) |
(1|1|0) |
- 1: | Amine N-methyltransferase [2.1.1.49] | (0|0) |
(0|0|0) |
- 1: | Anthranilate N-methyltransferase [2.1.1.111] | (0|0) |
(0|0|0) |
- 1: | Apigenin 4'-O-methyltransferase [2.1.1.75] | (0|0) |
(0|0|0) |
- 1: | Arsenite methyltransferase [2.1.1.137] | (0|0) |
(0|0|0) |
- 1: | Betaine--homocysteine S-methyltransferase [2.1.1.5] | (1|1) |
(1|0|0) |
- 1: | Caffeate O-methyltransferase [2.1.1.68] | (1|2) |
(1|1|0) |
- 1: | Caffeine synthase [2.1.1.160] | (0|1) |
(0|0|0) |
- 1: | Caffeoyl-CoA O-methyltransferase [2.1.1.104] | (0|1) |
(0|0|0) |
- 1: | Calmodulin-lysine N-methyltransferase [2.1.1.60] | (0|0) |
(0|0|0) |
- 1: | Carnosine N-methyltransferase [2.1.1.22] | (0|0) |
(0|0|0) |
- 1: | Catechol O-methyltransferase [2.1.1.6] | (0|1) |
(0|0|0) |
- 1: | Chlorophenol O-methyltransferase [2.1.1.136] | (0|0) |
(0|0|0) |
- 1: | Cobalt-factor II C(20)-methyltransferase [2.1.1.151] | (0|0) |
(0|0|0) |
- 1: | Cobalt-precorrin-5B (C(1))-methyltransferase [2.1.1.195] | (0|0) |
(0|0|0) |
- 1: | Cobalt-precorrin-7 (C(15))-methyltransferase (deca [2.1.1.196] | (0|0) |
(0|0|0) |
- 1: | Columbamine O-methyltransferase [2.1.1.118] | (0|0) |
(0|0|0) |
- 1: | Corydaline synthase [2.1.1.147] | (0|0) |
(0|0|0) |
- 1: | Cycloartenol 24-C-methyltransferase [2.1.1.142] | (0|0) |
(0|0|0) |
- 1: | Cyclopropane-fatty-acyl-phospholipid synthase [2.1.1.79] | (0|1) |
(0|0|0) |
- 1: | DNA (cytosine-5-)-methyltransferase [2.1.1.37] | (3|3) |
(4|2|0) |
- 1: | Deleted entry [2.1.1.30] | (0|0) |
(0|0|0) |
- 1: | Deleted entry [2.1.1.138] | (0|0) |
(0|0|0) |
- 1: | Deleted entry [2.1.1.194] | (0|0) |
(0|0|0) |
- 1: | Demethylmacrocin O-methyltransferase [2.1.1.102] | (0|0) |
(0|0|0) |
- 1: | Demethylmenaquinone methyltransferase [2.1.1.163] | (1|1) |
(1|0|0) |
- 1: | Demethylrebeccamycin-D-glucose O-methyltransferase [2.1.1.164] | (0|0) |
(0|0|0) |
- 1: | Demethylspheroidene O-methyltransferase [2.1.1.210] | (0|0) |
(0|0|0) |
- 1: | Demethylsterigmatocystin 6-O-methyltransferase [2.1.1.109] | (0|0) |
(0|0|0) |
- 1: | Deoxycytidylate C-methyltransferase [2.1.1.54] | (0|0) |
(0|0|0) |
- 1: | Dimethylglycine N-methyltransferase [2.1.1.161] | (0|0) |
(0|0|0) |
- 1: | Dimethylhistidine N-methyltransferase [2.1.1.44] | (0|0) |
(0|0|0) |
- 1: | Diphthine synthase [2.1.1.98] | (1|1) |
(1|0|0) |
- 1: | Fatty-acid O-methyltransferase [2.1.1.15] | (0|0) |
(0|0|0) |
- 1: | Flavone 3'-O-methyltransferase [2.1.1.42] | (0|0) |
(0|0|0) |
- 1: | Flavonoid 4'-O-methyltransferase [2.1.1.231] | (0|0) |
(0|0|0) |
- 1: | Geranyl diphosphate 2-C-methyltransferase [2.1.1.n6] | (0|0) |
(0|0|0) |
- 1: | Glucuronoxylan 4-O-methyltransferase [2.1.1.112] | (0|0) |
(0|0|0) |
- 1: | Glycine N-methyltransferase [2.1.1.20] | (0|1) |
(0|0|0) |
- 1: | Glycine/sarcosine N-methyltransferase [2.1.1.156] | (0|0) |
(0|0|0) |
- 1: | Glycine/sarcosine/dimethylglycine N-methyltransfer [2.1.1.162] | (0|0) |
(0|0|0) |
- 1: | Guanidinoacetate N-methyltransferase [2.1.1.2] | (0|1) |
(0|0|0) |
- 1: | Histamine N-methyltransferase [2.1.1.8] | (0|1) |
(0|0|0) |
- 1: | Histone-arginine N-methyltransferase [2.1.1.125] | (1|1) |
(2|2|0) |
- 1: | Histone-lysine N-methyltransferase [2.1.1.43] | (15|14) |
(17|14|4) |
- 1: | Homocysteine S-methyltransferase [2.1.1.10] | (1|1) |
(1|0|0) |
- 1: | Indolepyruvate C-methyltransferase [2.1.1.47] | (0|0) |
(0|0|0) |
- 1: | Inositol 1-methyltransferase [2.1.1.40] | (0|0) |
(0|0|0) |
- 1: | Inositol 3-methyltransferase [2.1.1.39] | (0|0) |
(0|0|0) |
- 1: | Inositol 4-methyltransferase [2.1.1.129] | (0|0) |
(0|0|0) |
- 1: | Iodophenol O-methyltransferase [2.1.1.26] | (0|0) |
(0|0|0) |
- 1: | Isobutyraldoxime O-methyltransferase [2.1.1.91] | (0|0) |
(0|0|0) |
- 1: | Isoflavone 4'-O-methyltransferase [2.1.1.46] | (0|0) |
(1|1|0) |
- 1: | Isoflavone 7-O-methyltransferase [2.1.1.150] | (0|0) |
(1|1|0) |
- 1: | Isoliquiritigenin 2'-O-methyltransferase [2.1.1.154] | (0|0) |
(0|0|0) |
- 1: | Isoorientin 3'-O-methyltransferase [2.1.1.78] | (0|0) |
(0|0|0) |
- 1: | Jasmonate O-methyltransferase [2.1.1.141] | (0|0) |
(0|0|0) |
- 1: | Kaempferol 4'-O-methyltransferase [2.1.1.155] | (0|0) |
(0|0|0) |
- 1: | L-olivosyl-oleandolide 3-O-methyltransferase [2.1.1.239] | (0|0) |
(0|0|0) |
- 1: | Licodione 2'-O-methyltransferase [2.1.1.65] | (0|0) |
(0|0|0) |
- 1: | Loganate O-methyltransferase [2.1.1.50] | (0|0) |
(0|0|0) |
- 1: | Macrocin O-methyltransferase [2.1.1.101] | (0|0) |
(0|0|0) |
- 1: | Magnesium protoporphyrin IX methyltransferase [2.1.1.11] | (0|0) |
(0|0|0) |
- 1: | Malonyl-CoA O-methyltransferase [2.1.1.197] | (2|0) |
(2|1|0) |
- 1: | Methanol--5-hydroxybenzimidazolylcobamide Co-methy [2.1.1.90] | (0|0) |
(0|0|0) |
- 1: | Methionine S-methyltransferase [2.1.1.12] | (0|0) |
(1|2|1) |
- 1: | Methionine synthase [2.1.1.13] | (5|5) |
(5|4|3) |
- 1: | Methyl halide transferase [2.1.1.165] | (0|0) |
(0|0|0) |
- 1: | Methylamine--glutamate N-methyltransferase [2.1.1.21] | (0|0) |
(0|0|0) |
- 1: | Methylated-DNA--[protein]-cysteine S-methyltransfe [2.1.1.63] | (2|2) |
(2|1|0) |
- 1: | Methylene-fatty-acyl-phospholipid synthase [2.1.1.16] | (0|0) |
(0|0|0) |
- 1: | Methylquercetagetin 6-O-methyltransferase [2.1.1.84] | (0|0) |
(0|0|0) |
- 1: | Multisite-specific tRNA:(cytosine-C(5))-methyltran [2.1.1.202] | (0|0) |
(0|0|0) |
- 1: | Mycinamicin III 3''-O-methyltransferase [2.1.1.237] | (0|0) |
(0|0|0) |
- 1: | Mycinamicin VI 2''-O-methyltransferase [2.1.1.238] | (0|0) |
(0|0|0) |
- 1: | Myricetin O-methyltransferase [2.1.1.149] | (0|0) |
(0|0|0) |
- 1: | N,N-dimethyltransferase [2.1.1.234] | (0|0) |
(0|0|0) |
- 1: | N-benzoyl-4-hydroxyanthranilate 4-O-methyltransfer [2.1.1.105] | (0|0) |
(0|0|0) |
- 1: | N-terminal protein methyltransferase [2.1.1.n5] | (0|1) |
(0|0|0) |
- 1: | Naringenin 7-O-methyltransferase [2.1.1.232] | (0|0) |
(0|0|0) |
- 1: | Nicotinamide N-methyltransferase [2.1.1.1] | (0|0) |
(0|0|0) |
- 1: | Nicotinate N-methyltransferase [2.1.1.7] | (0|0) |
(0|0|0) |
- 1: | O-demethylpuromycin O-methyltransferase [2.1.1.38] | (0|0) |
(0|0|0) |
- 1: | Phenol O-methyltransferase [2.1.1.25] | (0|0) |
(0|0|0) |
- 1: | Phenylethanolamine N-methyltransferase [2.1.1.28] | (0|1) |
(0|0|0) |
- 1: | Phosphatidyl-N-methylethanolamine N-methyltransfer [2.1.1.71] | (0|0) |
(0|0|0) |
- 1: | Phosphatidylethanolamine N-methyltransferase [2.1.1.17] | (0|0) |
(0|0|0) |
- 1: | Phosphoethanolamine N-methyltransferase [2.1.1.103] | (0|0) |
(0|1|0) |
- 1: | Polyprenyldihydroxybenzoate methyltransferase [2.1.1.114] | (0|0) |
(0|0|0) |
- 1: | Polysaccharide O-methyltransferase [2.1.1.18] | (0|0) |
(0|0|0) |
- 1: | Precorrin-2 C(20)-methyltransferase [2.1.1.130] | (0|0) |
(1|0|0) |
- 1: | Precorrin-3B C(17)-methyltransferase [2.1.1.131] | (0|0) |
(0|0|0) |
- 1: | Precorrin-4 C(11)-methyltransferase [2.1.1.133] | (1|1) |
(1|0|0) |
- 1: | Precorrin-6A synthase (deacetylating) [2.1.1.152] | (0|0) |
(0|0|0) |
- 1: | Precorrin-6Y C(5,15)-methyltransferase (decarboxyl [2.1.1.132] | (0|0) |
(1|1|0) |
- 1: | Protein-L-isoaspartate(D-aspartate) O-methyltransf [2.1.1.77] | (1|1) |
(1|0|0) |
- 1: | Protein-S-isoprenylcysteine O-methyltransferase [2.1.1.100] | (0|0) |
(0|0|0) |
- 1: | Protein-glutamate O-methyltransferase [2.1.1.80] | (1|2) |
(1|1|0) |
- 1: | Protein-histidine N-methyltransferase [2.1.1.85] | (0|0) |
(0|0|0) |
- 1: | Putrescine N-methyltransferase [2.1.1.53] | (0|0) |
(0|0|0) |
- 1: | Pyridine N-methyltransferase [2.1.1.87] | (0|0) |
(0|0|0) |
- 1: | Quercetin 3-O-methyltransferase [2.1.1.76] | (0|0) |
(1|1|0) |
- 1: | Resorcinol O-methyltransferase [2.1.1.n1] | (0|0) |
(0|0|0) |
- 1: | Sarcosine/dimethylglycine N-methyltransferase [2.1.1.157] | (0|0) |
(0|0|0) |
- 1: | Selenocysteine Se-methyltransferase [2.1.1.n3] | (0|0) |
(0|0|0) |
- 1: | Site-specific DNA-methyltransferase (adenine-speci [2.1.1.72] | (1|3) |
(1|0|0) |
- 1: | Site-specific DNA-methyltransferase (cytosine-N(4) [2.1.1.113] | (0|1) |
(0|1|0) |
- 1: | Sterigmatocystin 8-O-methyltransferase [2.1.1.110] | (0|0) |
(0|0|0) |
- 1: | Sterol 24-C-methyltransferase [2.1.1.41] | (0|0) |
(0|0|0) |
- 1: | Tabersonine 16-O-methyltransferase [2.1.1.94] | (0|0) |
(0|0|0) |
- 1: | Tetrahydrocolumbamine 2-O-methyltransferase [2.1.1.89] | (0|0) |
(0|0|0) |
- 1: | Tetrahydromethanopterin S-methyltransferase [2.1.1.86] | (1|0) |
(1|0|0) |
- 1: | Theobromine synthase [2.1.1.159] | (0|0) |
(0|0|0) |
- 1: | Thetin--homocysteine S-methyltransferase [2.1.1.3] | (0|0) |
(0|0|0) |
- 1: | Thiocyanate methyltransferase [2.1.1.n4] | (0|0) |
(0|0|0) |
- 1: | Thioether S-methyltransferase [2.1.1.96] | (0|0) |
(0|0|0) |
- 1: | Thiol S-methyltransferase [2.1.1.9] | (0|0) |
(0|0|0) |
- 1: | Thiopurine S-methyltransferase [2.1.1.67] | (1|1) |
(1|0|0) |
- 1: | Thymidylate synthase [2.1.1.45] | (2|2) |
(2|1|0) |
- 1: | Thymidylate synthase (FAD) [2.1.1.148] | (1|1) |
(1|0|0) |
- 1: | Tocopherol O-methyltransferase [2.1.1.95] | (0|0) |
(0|0|0) |
- 1: | Trans-aconitate 2-methyltransferase [2.1.1.144] | (1|0) |
(1|0|0) |
- 1: | Trans-aconitate 3-methyltransferase [2.1.1.145] | (0|0) |
(0|0|0) |
- 1: | Trans-resveratrol di-O-methyltransferase [2.1.1.240] | (0|0) |
(0|0|0) |
- 1: | Transferred entry: 1.16.1.8 [2.1.1.135] | (0|0) |
(0|0|0) |
- 1: | Transferred entry: 2.1.1.124, 2.1.1.125 and 2.1.1. [2.1.1.23] | (0|0) |
(0|0|0) |
- 1: | Transferred entry: 2.1.1.129 [2.1.1.134] | (0|0) |
(0|0|0) |
- 1: | Transferred entry: 2.1.1.171, 2.1.1.172, 2.1.1.173 [2.1.1.52] | (0|0) |
(0|0|0) |
- 1: | Transferred entry: 2.1.1.181, 2.1.1.182, 2.1.1.183 [2.1.1.48] | (0|0) |
(0|0|0) |
- 1: | Transferred entry: 2.1.1.187 and 2.1.1.188 [2.1.1.51] | (0|0) |
(0|0|0) |
- 1: | Transferred entry: 2.1.1.202, 2.1.1.203 and 2.1.1. [2.1.1.29] | (0|0) |
(0|0|0) |
- 1: | Transferred entry: 2.1.1.211 [2.1.1.n2] | (0|0) |
(0|0|0) |
- 1: | Transferred entry: 2.1.1.213, 2.1.1.214, 2.1.1.215 [2.1.1.32] | (0|0) |
(0|0|0) |
- 1: | Transferred entry: 2.1.1.217, 2.1.1.218, 2.1.1.219 [2.1.1.36] | (0|0) |
(0|0|0) |
- 1: | Transferred entry: 2.1.1.221 and 2.1.1.228 [2.1.1.31] | (0|0) |
(0|0|0) |
- 1: | Transferred entry: 2.1.1.37 [2.1.1.73] | (0|0) |
(0|0|0) |
- 1: | Transferred entry: 2.1.1.49 [2.1.1.81] | (0|0) |
(0|0|0) |
- 1: | Transferred entry: 2.1.1.57 [2.1.1.58] | (0|0) |
(0|0|0) |
- 1: | Transferred entry: 2.1.1.69 [2.1.1.92] | (0|0) |
(0|0|0) |
- 1: | Transferred entry: 2.1.1.70 [2.1.1.93] | (0|0) |
(0|0|0) |
- 1: | Transferred entry: 2.1.1.77, 2.1.1.80 and 2.1.1.10 [2.1.1.24] | (0|0) |
(0|0|0) |
- 1: | Tricetin 3',4',5'-O-trimethyltransferase [2.1.1.169] | (0|0) |
(0|0|0) |
- 1: | Tricin synthase [2.1.1.175] | (0|0) |
(0|0|0) |
- 1: | Trimethylsulfonium--tetrahydrofolate N-methyltrans [2.1.1.19] | (0|0) |
(0|0|0) |
- 1: | Tryptophan 2-C-methyltransferase [2.1.1.106] | (0|0) |
(0|0|0) |
- 1: | Tyramine N-methyltransferase [2.1.1.27] | (0|0) |
(0|0|0) |
- 1: | Uroporphyrinogen-III C-methyltransferase [2.1.1.107] | (3|3) |
(3|2|1) |
- 1: | Vitexin 2''-O-rhamnoside 7-O-methyltransferase [2.1.1.153] | (0|0) |
(0|0|0) |
- 1: | [Cytochrome c]-arginine N-methyltransferase [2.1.1.124] | (0|0) |
(0|0|0) |
- 1: | [Cytochrome c]-lysine N-methyltransferase [2.1.1.59] | (0|0) |
(1|0|0) |
- 1: | [Cytochrome c]-methionine S-methyltransferase [2.1.1.123] | (0|0) |
(0|0|0) |
- 1: | [Myelin basic protein]-arginine N-methyltransferas [2.1.1.126] | (0|1) |
(0|1|0) |
- 1: | [Phosphatase 2A protein]-leucine-carboxy methyltra [2.1.1.233] | (0|1) |
(0|0|0) |
- 1: | [Ribulose-bisphosphate carboxylase]-lysine N-methy [2.1.1.127] | (0|0) |
(2|1|0) |
- 1: | dTDP-3-amino-3,6-dideoxy-alpha-D-galactopyranose N [2.1.1.236] | (0|0) |
(0|0|0) |
- 1: | dTDP-3-amino-3,6-dideoxy-alpha-D-glucopyranose N,N [2.1.1.235] | (0|0) |
(0|0|0) |
- 1: | mRNA (2'-O-methyladenosine-N(6)-)-methyltransferas [2.1.1.62] | (0|0) |
(0|0|0) |
- 1: | mRNA (guanine-N(7)-)-methyltransferase [2.1.1.56] | (7|8) |
(9|5|1) |
- 1: | mRNA (nucleoside-2'-O-)-methyltransferase [2.1.1.57] | (7|7) |
(7|4|1) |
- 1: | rRNA (adenosine-2'-O-)-methyltransferase [2.1.1.66] | (0|0) |
(0|0|0) |
- 1: | tRNA (5-methylaminomethyl-2-thiouridylate)-methylt [2.1.1.61] | (3|0) |
(3|3|1) |
- 1: | tRNA (adenine(22)-N(1))-methyltransferase [2.1.1.217] | (0|0) |
(0|0|0) |
- 1: | tRNA (adenine(57)-N(1)/adenine(58)-N(1))-methyltra [2.1.1.219] | (0|0) |
(0|0|0) |
- 1: | tRNA (adenine(58)-N(1))-methyltransferase [2.1.1.220] | (0|1) |
(0|0|0) |
- 1: | tRNA (adenine(9)-N(1))-methyltransferase [2.1.1.218] | (0|0) |
(0|0|0) |
- 1: | tRNA (adenine-N(6)-)-methyltransferase [2.1.1.55] | (0|0) |
(0|0|0) |
- 1: | tRNA (carboxymethyluridine(34)-5-O)-methyltransfer [2.1.1.229] | (2|2) |
(2|2|1) |
- 1: | tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltrans [2.1.1.205] | (0|0) |
(0|0|0) |
- 1: | tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransfe [2.1.1.200] | (1|0) |
(1|0|0) |
- 1: | tRNA (cytidine(34)-2'-O)-methyltransferase [2.1.1.207] | (1|1) |
(1|0|0) |
- 1: | tRNA (cytidine(56)-2'-O)-methyltransferase [2.1.1.206] | (1|1) |
(2|1|0) |
- 1: | tRNA (cytosine(34)-C(5))-methyltransferase [2.1.1.203] | (0|1) |
(0|0|0) |
- 1: | tRNA (cytosine(38)-C(5))-methyltransferase [2.1.1.204] | (0|0) |
(0|0|0) |
- 1: | tRNA (guanine(10)-N(2))-dimethyltransferase [2.1.1.213] | (0|0) |
(1|1|0) |
- 1: | tRNA (guanine(10)-N(2))-methyltransferase [2.1.1.214] | (0|0) |
(0|0|0) |
- 1: | tRNA (guanine(26)-N(2))-dimethyltransferase [2.1.1.216] | (1|1) |
(1|0|0) |
- 1: | tRNA (guanine(26)-N(2)/guanine(27)-N(2))-dimethylt [2.1.1.215] | (0|0) |
(0|0|0) |
- 1: | tRNA (guanine(37)-N(1))-methyltransferase [2.1.1.228] | (2|2) |
(2|2|0) |
- 1: | tRNA (guanine(46)-N(7))-methyltransferase [2.1.1.33] | (1|2) |
(1|0|0) |
- 1: | tRNA (guanine(9)-N(1))-methyltransferase [2.1.1.221] | (0|0) |
(0|0|0) |
- 1: | tRNA (guanosine(18)-2'-O)-methyltransferase [2.1.1.34] | (0|0) |
(1|0|0) |
- 1: | tRNA (uracil(54)-C(5))-methyltransferase [2.1.1.35] | (1|1) |
(1|0|0) |
- 1: | tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase [2.1.1.223] | (1|0) |
(1|0|0) |
- 1: | tRNA(Ser) (uridine(44)-2'-O-)-methyltransferase [2.1.1.211] | (0|0) |
(0|0|0) |
- 1: | tRNA:m(4)X modification enzyme [2.1.1.225] | (0|0) |
(0|0|0) |
Trees by TreeVector
A presence/absence matrix is generated using protein domains and supradomains
for all genomes in SUPERFAMILY. The RAxML
software is used to produce a single, large tree topology using
heuristic parsimony methods. Genome combinations, or specific clades, can be displayed as
if individual trees had been produced. However, this data is extracted from the single
large tree. This produces a higher quality topology than if the trees had been produced
on their own, and allows the trees to be displayed instantly.
Supra-domain (Duplex) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
54928,51197 54928 - RNA-binding domain, RBD 51197 - Clavaminate synthase-like | 0 | Direct |
57903,63748 57903 - FYVE/PHD zinc finger 63748 - Tudor/PWWP/MBT | 0 | Direct |
51726,51726 51726 - UROD/MetE-like 51726 - UROD/MetE-like | 0 | Direct |
53335,51905 53335 - S-adenosyl-L-methionine-dependent methyltransferases 51905 - FAD/NAD(P)-binding domain | 0 | Direct |
56983,81296 56983 - Viral glycoprotein, central and dimerisation domains 81296 - E set domains | 0 | Direct |
47413,53335 47413 - lambda repressor-like DNA-binding domains 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | Direct |
88697,75217 88697 - PUA domain-like 75217 - alpha/beta knot | 0 | Direct |
82282,51717 82282 - Homocysteine S-methyltransferase 51717 - Dihydropteroate synthetase-like | 0 | Direct |
54160,82199 54160 - Chromo domain-like 82199 - SET domain | 0 | Direct |
57903,47370 57903 - FYVE/PHD zinc finger 47370 - Bromodomain | 0 | Direct |
82199,57903 82199 - SET domain 57903 - FYVE/PHD zinc finger | 0 | Direct |
143437,53335 143437 - THUMP domain-like 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | Direct |
53597,55831 53597 - Dihydrofolate reductase-like 55831 - Thymidylate synthase/dCMP hydroxymethylase | 0 | Direct |
88697,82199 88697 - PUA domain-like 82199 - SET domain | 0 | Direct |
53335,50249 53335 - S-adenosyl-L-methionine-dependent methyltransferases 50249 - Nucleic acid-binding proteins | 0 | Direct |
53335,53383 53335 - S-adenosyl-L-methionine-dependent methyltransferases 53383 - PLP-dependent transferases | 0 | Direct |
53155,46767 53155 - Methylated DNA-protein cysteine methyltransferase domain 46767 - Methylated DNA-protein cysteine methyltransferase, C-terminal domain | 0 | Direct |
54171,82199 54171 - DNA-binding domain 82199 - SET domain | 0 | Direct |
53335,53335 53335 - S-adenosyl-L-methionine-dependent methyltransferases 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | Direct |
53790,53335 53790 - Tetrapyrrole methylase 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | Direct |
63748,82199 63748 - Tudor/PWWP/MBT 82199 - SET domain | 0 | Direct |
55315,75217 55315 - L30e-like 75217 - alpha/beta knot | 0 | Direct |
57667,57667 57667 - beta-beta-alpha zinc fingers 57667 - beta-beta-alpha zinc fingers | 0 | Direct |
75217,54593 75217 - alpha/beta knot 54593 - Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0 | Direct |
88697,53335 88697 - PUA domain-like 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | Direct |
53335,56672 53335 - S-adenosyl-L-methionine-dependent methyltransferases 56672 - DNA/RNA polymerases | 0 | Direct |
51717,47644 51717 - Dihydropteroate synthetase-like 47644 - Methionine synthase domain | 0 | Direct |
50044,53335 50044 - SH3-domain 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | Direct |
50494,52540 50494 - Trypsin-like serine proteases 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | Direct |
54160,53335 54160 - Chromo domain-like 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | Direct |
53474,53335 53474 - alpha/beta-Hydrolases 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | Direct |
53335,81799 53335 - S-adenosyl-L-methionine-dependent methyltransferases 81799 - Putative methyltransferase TM0872, insert domain | 0 | Direct |
52242,56507 52242 - Cobalamin (vitamin B12)-binding domain 56507 - Methionine synthase activation domain-like | 0 | Direct |
82199,81822 82199 - SET domain 81822 - RuBisCo LSMT C-terminal, substrate-binding domain | 0 | Direct |
75615,53790 75615 - Siroheme synthase middle domains-like 53790 - Tetrapyrrole methylase | 0 | Direct |
48403,82199 48403 - Ankyrin repeat 82199 - SET domain | 0 | Direct |
46785,53335 46785 - "Winged helix" DNA-binding domain 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | Direct |
48013,53335 48013 - NusB-like 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | Direct |
47644,52242 47644 - Methionine synthase domain 52242 - Cobalamin (vitamin B12)-binding domain | 0 | Direct |
47757,53335 47757 - Chemotaxis receptor methyltransferase CheR, N-terminal domain 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | Direct |
82199,48452 82199 - SET domain 48452 - TPR-like | 0 | Direct |
75217,75217 75217 - alpha/beta knot 75217 - alpha/beta knot | 0 | Direct |
57903,82199 57903 - FYVE/PHD zinc finger 82199 - SET domain | 0 | Direct |
75217,109604 75217 - alpha/beta knot 109604 - HD-domain/PDEase-like | 0 | Direct |
55154,56091 55154 - CYTH-like phosphatases 56091 - DNA ligase/mRNA capping enzyme, catalytic domain | 0 | Direct |
51197,53335 51197 - Clavaminate synthase-like 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | Direct |
51735,75615 51735 - NAD(P)-binding Rossmann-fold domains 75615 - Siroheme synthase middle domains-like | 0 | Direct |
82185,82199 82185 - Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 82199 - SET domain | 0 | Direct |
50249,53335 50249 - Nucleic acid-binding proteins 53335 - S-adenosyl-L-methionine-dependent methyltransferases | 0 | Direct |
57903,57903 57903 - FYVE/PHD zinc finger 57903 - FYVE/PHD zinc finger | 0.000000000005033 | Direct |
51905,54373 51905 - FAD/NAD(P)-binding domain 54373 - FAD-linked reductases, C-terminal domain | 0.00007626 | Direct |
51971,54373 51971 - Nucleotide-binding domain 54373 - FAD-linked reductases, C-terminal domain | 0.03161 | Inherited |
52540,52540 52540 - P-loop containing nucleoside triphosphate hydrolases 52540 - P-loop containing nucleoside triphosphate hydrolases | 1 | Inherited |
53383,53383 53383 - PLP-dependent transferases 53383 - PLP-dependent transferases | 1 | Inherited |
Trees by TreeVector
A presence/absence matrix is generated using protein domains and supradomains
for all genomes in SUPERFAMILY. The RAxML
software is used to produce a single, large tree topology using
heuristic parsimony methods. Genome combinations, or specific clades, can be displayed as
if individual trees had been produced. However, this data is extracted from the single
large tree. This produces a higher quality topology than if the trees had been produced
on their own, and allows the trees to be displayed instantly.