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Serine endopeptidases
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Enzyme Commission (EC)
Each enzyme is allocated a four-digit EC number, the first three digits of which define the reaction catalysed and the fourth of which is a unique identifier (serial number). Each enzyme is also assigned a systematic name that uniquely defines the reaction catalysed. To navigate hierarchical structure of EC, we display all parental EC terms to the current EC term of interest ordered by their shortest distances to the current term. Also, only direct children EC terms of the current EC term are listed.
Structural Classification of Proteins (SCOP)
SCOP classifies evolutionary-related domains into Superfamily level and Family level. Accordingly, we have generated the domain-centric EC annotations for each of the three concepts at each of the two domain levels.
Structural Domain Enzyme Commission Ontology (SDEO)
As domain-centric ontology, SDEO only refers to those EC terms which are the most informative to annotate SCOP domains.
EC annotations for SCOP domains
For details, please visit Documentation: EC annotations for SCOP domains. Therein, we provide several relevant files ( Data Availability) for the download, including an annotation file (i.e., Domain2EC.txt) and the corresponding ontology (i.e., SDEO.txt).
Supra-domain Enzyme Commission Ontology (SPEO)
As an extension, SPEO includes those EC terms which are the most informative to annotate supra-domains and individual SCOP domains at the Superfamily level.
EC annotations for Supra-domains
For details, please visit Documentation: EC annotations for Supra-domains. Therein, we provide several relevant files ( Data Availability) for the download, including a annotation file (i.e., SP2EC.txt) and an ontology (i.e., SPEO.txt). For the sake of being browsable, listed below are those supra-domains (single, dual, triple, quad).
Jump to [ Top · EC Hierarchy · Superfamily · Family · Supra-domain ]
Root: EC Hierarchy (from IntEnz release 70)
Jump to [ Top · EC Hierarchy · Superfamily · Family · Supra-domain ]
Superfamily(show details)
Jump to [ Top · EC Hierarchy · Superfamily · Family · Supra-domain ]
Family(show details)
Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this EC term
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Plot tree as:
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Download Newick format tree:
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(show help)
Trees by TreeVector
A presence/absence matrix is generated using protein domains and supradomains
for all genomes in SUPERFAMILY. The RAxML
software is used to produce a single, large tree topology using
heuristic parsimony methods. Genome combinations, or specific clades, can be displayed as
if individual trees had been produced. However, this data is extracted from the single
large tree. This produces a higher quality topology than if the trees had been produced
on their own, and allows the trees to be displayed instantly.
Jump to [ Top · EC Hierarchy · Superfamily · Family · Supra-domain ]
Supra-domain (including individual superfamily)
(show details)
(show details)
Supra-domains annotated to this EC term (SPEO level: Moderately Informative)
Highlighted in gray are those with FDR>0.001
Supra-domain (Duplex) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
57196,50494 57196 - EGF/Laminin 50494 - Trypsin-like serine proteases | 0 | DIRECT |
57184,50494 57184 - Growth factor receptor domain 50494 - Trypsin-like serine proteases | 0 | DIRECT |
56983,81296 56983 - Viral glycoprotein, central and dimerisation domains 81296 - E set domains | 0 | DIRECT |
57630,57440 57630 - GLA-domain 57440 - Kringle-like | 0 | DIRECT |
57630,57184 57630 - GLA-domain 57184 - Growth factor receptor domain | 0 | DIRECT |
47473,144091 47473 - EF-hand 144091 - Rhomboid-like | 0 | DIRECT |
57424,49854 57424 - LDL receptor-like module 49854 - Spermadhesin, CUB domain | 0 | DIRECT |
50494,50156 50494 - Trypsin-like serine proteases 50156 - PDZ domain-like | 0 | DIRECT |
52540,52540 52540 - P-loop containing nucleoside triphosphate hydrolases 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | DIRECT |
57603,57440 57603 - FnI-like domain 57440 - Kringle-like | 0 | DIRECT |
50156,50156 50156 - PDZ domain-like 50156 - PDZ domain-like | 0 | DIRECT |
49854,49899 49854 - Spermadhesin, CUB domain 49899 - Concanavalin A-like lectins/glucanases | 0 | DIRECT |
57424,57424 57424 - LDL receptor-like module 57424 - LDL receptor-like module | 0 | DIRECT |
52540,54211 52540 - P-loop containing nucleoside triphosphate hydrolases 54211 - Ribosomal protein S5 domain 2-like | 0 | DIRECT |
52743,49785 52743 - Subtilisin-like 49785 - Galactose-binding domain-like | 0 | DIRECT |
56487,50494 56487 - SRCR-like 50494 - Trypsin-like serine proteases | 0 | DIRECT |
57414,57440 57414 - Hairpin loop containing domain-like 57440 - Kringle-like | 0 | DIRECT |
57196,57196 57196 - EGF/Laminin 57196 - EGF/Laminin | 0 | DIRECT |
57535,53300 57535 - Complement control module/SCR domain 53300 - vWA-like | 0 | DIRECT |
53335,56672 53335 - S-adenosyl-L-methionine-dependent methyltransferases 56672 - DNA/RNA polymerases | 0 | DIRECT |
57630,57196 57630 - GLA-domain 57196 - EGF/Laminin | 0 | DIRECT |
50156,52096 50156 - PDZ domain-like 52096 - ClpP/crotonase | 0 | DIRECT |
82671,49854 82671 - SEA domain 49854 - Spermadhesin, CUB domain | 0 | DIRECT |
53300,50494 53300 - vWA-like 50494 - Trypsin-like serine proteases | 0 | DIRECT |
49854,50494 49854 - Spermadhesin, CUB domain 50494 - Trypsin-like serine proteases | 0 | DIRECT |
49899,49854 49899 - Concanavalin A-like lectins/glucanases 49854 - Spermadhesin, CUB domain | 0 | DIRECT |
57440,50494 57440 - Kringle-like 50494 - Trypsin-like serine proteases | 0 | DIRECT |
82671,57424 82671 - SEA domain 57424 - LDL receptor-like module | 0 | DIRECT |
100895,56487 100895 - Kazal-type serine protease inhibitors 56487 - SRCR-like | 0 | DIRECT |
49854,57535 49854 - Spermadhesin, CUB domain 57535 - Complement control module/SCR domain | 0 | DIRECT |
56487,57424 56487 - SRCR-like 57424 - LDL receptor-like module | 0 | DIRECT |
49854,57424 49854 - Spermadhesin, CUB domain 57424 - LDL receptor-like module | 0 | DIRECT |
57535,50494 57535 - Complement control module/SCR domain 50494 - Trypsin-like serine proteases | 0 | DIRECT |
57440,57196 57440 - Kringle-like 57196 - EGF/Laminin | 0 | DIRECT |
46785,51306 46785 - "Winged helix" DNA-binding domain 51306 - LexA/Signal peptidase | 0 | DIRECT |
52743,52025 52743 - Subtilisin-like 52025 - PA domain | 0 | DIRECT |
57424,56487 57424 - LDL receptor-like module 56487 - SRCR-like | 0 | DIRECT |
57424,50494 57424 - LDL receptor-like module 50494 - Trypsin-like serine proteases | 0 | DIRECT |
50494,52540 50494 - Trypsin-like serine proteases 52540 - P-loop containing nucleoside triphosphate hydrolases | 0.000000000000003816 | DIRECT |
57535,57535 57535 - Complement control module/SCR domain 57535 - Complement control module/SCR domain | 0.0000000000000182 | DIRECT |
54897,52743 54897 - Protease propeptides/inhibitors 52743 - Subtilisin-like | 0.000000000001421 | DIRECT |
57196,49854 57196 - EGF/Laminin 49854 - Spermadhesin, CUB domain | 0.00000001813 | DIRECT |
49854,57196 49854 - Spermadhesin, CUB domain 57196 - EGF/Laminin | 0.00000001813 | DIRECT |
49785,57184 49785 - Galactose-binding domain-like 57184 - Growth factor receptor domain | 0.000001294 | DIRECT |
57440,57440 57440 - Kringle-like 57440 - Kringle-like | 0.00003031 | DIRECT |
50993,53474 50993 - Peptidase/esterase 'gauge' domain 53474 - alpha/beta-Hydrolases | 0.001608 | INHERITED FROM: Prolyl oligopeptidase |
49854,49854 49854 - Spermadhesin, CUB domain 49854 - Spermadhesin, CUB domain | 0.03731 | INHERITED FROM: Oviductin || Matriptase |
Supra-domain (Duplex) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
57196,50494 57196 - EGF/Laminin 50494 - Trypsin-like serine proteases | 0 | Direct |
57184,50494 57184 - Growth factor receptor domain 50494 - Trypsin-like serine proteases | 0 | Direct |
56983,81296 56983 - Viral glycoprotein, central and dimerisation domains 81296 - E set domains | 0 | Direct |
57630,57440 57630 - GLA-domain 57440 - Kringle-like | 0 | Direct |
57630,57184 57630 - GLA-domain 57184 - Growth factor receptor domain | 0 | Direct |
47473,144091 47473 - EF-hand 144091 - Rhomboid-like | 0 | Direct |
57424,49854 57424 - LDL receptor-like module 49854 - Spermadhesin, CUB domain | 0 | Direct |
50494,50156 50494 - Trypsin-like serine proteases 50156 - PDZ domain-like | 0 | Direct |
52540,52540 52540 - P-loop containing nucleoside triphosphate hydrolases 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | Direct |
57603,57440 57603 - FnI-like domain 57440 - Kringle-like | 0 | Direct |
50156,50156 50156 - PDZ domain-like 50156 - PDZ domain-like | 0 | Direct |
49854,49899 49854 - Spermadhesin, CUB domain 49899 - Concanavalin A-like lectins/glucanases | 0 | Direct |
57424,57424 57424 - LDL receptor-like module 57424 - LDL receptor-like module | 0 | Direct |
52540,54211 52540 - P-loop containing nucleoside triphosphate hydrolases 54211 - Ribosomal protein S5 domain 2-like | 0 | Direct |
52743,49785 52743 - Subtilisin-like 49785 - Galactose-binding domain-like | 0 | Direct |
56487,50494 56487 - SRCR-like 50494 - Trypsin-like serine proteases | 0 | Direct |
57414,57440 57414 - Hairpin loop containing domain-like 57440 - Kringle-like | 0 | Direct |
57196,57196 57196 - EGF/Laminin 57196 - EGF/Laminin | 0 | Direct |
57535,53300 57535 - Complement control module/SCR domain 53300 - vWA-like | 0 | Direct |
53335,56672 53335 - S-adenosyl-L-methionine-dependent methyltransferases 56672 - DNA/RNA polymerases | 0 | Direct |
57630,57196 57630 - GLA-domain 57196 - EGF/Laminin | 0 | Direct |
50156,52096 50156 - PDZ domain-like 52096 - ClpP/crotonase | 0 | Direct |
82671,49854 82671 - SEA domain 49854 - Spermadhesin, CUB domain | 0 | Direct |
53300,50494 53300 - vWA-like 50494 - Trypsin-like serine proteases | 0 | Direct |
49854,50494 49854 - Spermadhesin, CUB domain 50494 - Trypsin-like serine proteases | 0 | Direct |
49899,49854 49899 - Concanavalin A-like lectins/glucanases 49854 - Spermadhesin, CUB domain | 0 | Direct |
57440,50494 57440 - Kringle-like 50494 - Trypsin-like serine proteases | 0 | Direct |
82671,57424 82671 - SEA domain 57424 - LDL receptor-like module | 0 | Direct |
100895,56487 100895 - Kazal-type serine protease inhibitors 56487 - SRCR-like | 0 | Direct |
49854,57535 49854 - Spermadhesin, CUB domain 57535 - Complement control module/SCR domain | 0 | Direct |
56487,57424 56487 - SRCR-like 57424 - LDL receptor-like module | 0 | Direct |
49854,57424 49854 - Spermadhesin, CUB domain 57424 - LDL receptor-like module | 0 | Direct |
57535,50494 57535 - Complement control module/SCR domain 50494 - Trypsin-like serine proteases | 0 | Direct |
57440,57196 57440 - Kringle-like 57196 - EGF/Laminin | 0 | Direct |
46785,51306 46785 - "Winged helix" DNA-binding domain 51306 - LexA/Signal peptidase | 0 | Direct |
52743,52025 52743 - Subtilisin-like 52025 - PA domain | 0 | Direct |
57424,56487 57424 - LDL receptor-like module 56487 - SRCR-like | 0 | Direct |
57424,50494 57424 - LDL receptor-like module 50494 - Trypsin-like serine proteases | 0 | Direct |
50494,52540 50494 - Trypsin-like serine proteases 52540 - P-loop containing nucleoside triphosphate hydrolases | 0.000000000000003816 | Direct |
57535,57535 57535 - Complement control module/SCR domain 57535 - Complement control module/SCR domain | 0.0000000000000182 | Direct |
54897,52743 54897 - Protease propeptides/inhibitors 52743 - Subtilisin-like | 0.000000000001421 | Direct |
57196,49854 57196 - EGF/Laminin 49854 - Spermadhesin, CUB domain | 0.00000001813 | Direct |
49854,57196 49854 - Spermadhesin, CUB domain 57196 - EGF/Laminin | 0.00000001813 | Direct |
49785,57184 49785 - Galactose-binding domain-like 57184 - Growth factor receptor domain | 0.000001294 | Direct |
57440,57440 57440 - Kringle-like 57440 - Kringle-like | 0.00003031 | Direct |
50993,53474 50993 - Peptidase/esterase 'gauge' domain 53474 - alpha/beta-Hydrolases | 0.001608 | Inherited |
49854,49854 49854 - Spermadhesin, CUB domain 49854 - Spermadhesin, CUB domain | 0.03731 | Inherited |
(show details)
Supra-domains annotated to this EC term (SPEO level: Moderately Informative)
Highlighted in gray are those with FDR>0.001
Supra-domain (Triple) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
57196,49854,57535 57196 - EGF/Laminin 49854 - Spermadhesin, CUB domain 57535 - Complement control module/SCR domain | 0 | DIRECT |
49854,49854,50494 49854 - Spermadhesin, CUB domain 49854 - Spermadhesin, CUB domain 50494 - Trypsin-like serine proteases | 0 | DIRECT |
50494,52540,52540 50494 - Trypsin-like serine proteases 52540 - P-loop containing nucleoside triphosphate hydrolases 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | DIRECT |
57630,57196,57196 57630 - GLA-domain 57196 - EGF/Laminin 57196 - EGF/Laminin | 0 | DIRECT |
57603,57440,57440 57603 - FnI-like domain 57440 - Kringle-like 57440 - Kringle-like | 0 | DIRECT |
82671,49854,49854 82671 - SEA domain 49854 - Spermadhesin, CUB domain 49854 - Spermadhesin, CUB domain | 0 | DIRECT |
49854,49854,57424 49854 - Spermadhesin, CUB domain 49854 - Spermadhesin, CUB domain 57424 - LDL receptor-like module | 0 | DIRECT |
57424,56487,50494 57424 - LDL receptor-like module 56487 - SRCR-like 50494 - Trypsin-like serine proteases | 0 | DIRECT |
57424,49854,49899 57424 - LDL receptor-like module 49854 - Spermadhesin, CUB domain 49899 - Concanavalin A-like lectins/glucanases | 0 | DIRECT |
56487,57424,57424 56487 - SRCR-like 57424 - LDL receptor-like module 57424 - LDL receptor-like module | 0 | DIRECT |
49899,49854,57424 49899 - Concanavalin A-like lectins/glucanases 49854 - Spermadhesin, CUB domain 57424 - LDL receptor-like module | 0 | DIRECT |
49854,49899,49854 49854 - Spermadhesin, CUB domain 49899 - Concanavalin A-like lectins/glucanases 49854 - Spermadhesin, CUB domain | 0 | DIRECT |
100895,56487,57424 100895 - Kazal-type serine protease inhibitors 56487 - SRCR-like 57424 - LDL receptor-like module | 0 | DIRECT |
49854,57424,57424 49854 - Spermadhesin, CUB domain 57424 - LDL receptor-like module 57424 - LDL receptor-like module | 0 | DIRECT |
57630,57440,57440 57630 - GLA-domain 57440 - Kringle-like 57440 - Kringle-like | 0 | DIRECT |
57424,57424,57424 57424 - LDL receptor-like module 57424 - LDL receptor-like module 57424 - LDL receptor-like module | 0 | DIRECT |
54897,52743,49785 54897 - Protease propeptides/inhibitors 52743 - Subtilisin-like 49785 - Galactose-binding domain-like | 0 | DIRECT |
57535,57535,53300 57535 - Complement control module/SCR domain 57535 - Complement control module/SCR domain 53300 - vWA-like | 0 | DIRECT |
57535,57535,50494 57535 - Complement control module/SCR domain 57535 - Complement control module/SCR domain 50494 - Trypsin-like serine proteases | 0 | DIRECT |
50494,50156,50156 50494 - Trypsin-like serine proteases 50156 - PDZ domain-like 50156 - PDZ domain-like | 0 | DIRECT |
52743,49785,57184 52743 - Subtilisin-like 49785 - Galactose-binding domain-like 57184 - Growth factor receptor domain | 0 | DIRECT |
57630,57184,50494 57630 - GLA-domain 57184 - Growth factor receptor domain 50494 - Trypsin-like serine proteases | 0 | DIRECT |
57424,57424,50494 57424 - LDL receptor-like module 57424 - LDL receptor-like module 50494 - Trypsin-like serine proteases | 0 | DIRECT |
57414,57440,57440 57414 - Hairpin loop containing domain-like 57440 - Kringle-like 57440 - Kringle-like | 0 | DIRECT |
49854,57535,57535 49854 - Spermadhesin, CUB domain 57535 - Complement control module/SCR domain 57535 - Complement control module/SCR domain | 0 | DIRECT |
57440,57440,50494 57440 - Kringle-like 57440 - Kringle-like 50494 - Trypsin-like serine proteases | 0 | DIRECT |
49854,57424,56487 49854 - Spermadhesin, CUB domain 57424 - LDL receptor-like module 56487 - SRCR-like | 0 | DIRECT |
57630,57196,50494 57630 - GLA-domain 57196 - EGF/Laminin 50494 - Trypsin-like serine proteases | 0 | DIRECT |
57196,57196,50494 57196 - EGF/Laminin 57196 - EGF/Laminin 50494 - Trypsin-like serine proteases | 0 | DIRECT |
57535,53300,50494 57535 - Complement control module/SCR domain 53300 - vWA-like 50494 - Trypsin-like serine proteases | 0 | DIRECT |
82671,57424,49854 82671 - SEA domain 57424 - LDL receptor-like module 49854 - Spermadhesin, CUB domain | 0 | DIRECT |
49854,57196,49854 49854 - Spermadhesin, CUB domain 57196 - EGF/Laminin 49854 - Spermadhesin, CUB domain | 0.00000001813 | DIRECT |
57535,57535,57535 57535 - Complement control module/SCR domain 57535 - Complement control module/SCR domain 57535 - Complement control module/SCR domain | 0.00000061 | DIRECT |
57440,57440,57440 57440 - Kringle-like 57440 - Kringle-like 57440 - Kringle-like | 0.07249 | INHERITED FROM: Plasmin |
Supra-domain (Triple) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
57196,49854,57535 57196 - EGF/Laminin 49854 - Spermadhesin, CUB domain 57535 - Complement control module/SCR domain | 0 | Direct |
49854,49854,50494 49854 - Spermadhesin, CUB domain 49854 - Spermadhesin, CUB domain 50494 - Trypsin-like serine proteases | 0 | Direct |
50494,52540,52540 50494 - Trypsin-like serine proteases 52540 - P-loop containing nucleoside triphosphate hydrolases 52540 - P-loop containing nucleoside triphosphate hydrolases | 0 | Direct |
57630,57196,57196 57630 - GLA-domain 57196 - EGF/Laminin 57196 - EGF/Laminin | 0 | Direct |
57603,57440,57440 57603 - FnI-like domain 57440 - Kringle-like 57440 - Kringle-like | 0 | Direct |
82671,49854,49854 82671 - SEA domain 49854 - Spermadhesin, CUB domain 49854 - Spermadhesin, CUB domain | 0 | Direct |
49854,49854,57424 49854 - Spermadhesin, CUB domain 49854 - Spermadhesin, CUB domain 57424 - LDL receptor-like module | 0 | Direct |
57424,56487,50494 57424 - LDL receptor-like module 56487 - SRCR-like 50494 - Trypsin-like serine proteases | 0 | Direct |
57424,49854,49899 57424 - LDL receptor-like module 49854 - Spermadhesin, CUB domain 49899 - Concanavalin A-like lectins/glucanases | 0 | Direct |
56487,57424,57424 56487 - SRCR-like 57424 - LDL receptor-like module 57424 - LDL receptor-like module | 0 | Direct |
49899,49854,57424 49899 - Concanavalin A-like lectins/glucanases 49854 - Spermadhesin, CUB domain 57424 - LDL receptor-like module | 0 | Direct |
49854,49899,49854 49854 - Spermadhesin, CUB domain 49899 - Concanavalin A-like lectins/glucanases 49854 - Spermadhesin, CUB domain | 0 | Direct |
100895,56487,57424 100895 - Kazal-type serine protease inhibitors 56487 - SRCR-like 57424 - LDL receptor-like module | 0 | Direct |
49854,57424,57424 49854 - Spermadhesin, CUB domain 57424 - LDL receptor-like module 57424 - LDL receptor-like module | 0 | Direct |
57630,57440,57440 57630 - GLA-domain 57440 - Kringle-like 57440 - Kringle-like | 0 | Direct |
57424,57424,57424 57424 - LDL receptor-like module 57424 - LDL receptor-like module 57424 - LDL receptor-like module | 0 | Direct |
54897,52743,49785 54897 - Protease propeptides/inhibitors 52743 - Subtilisin-like 49785 - Galactose-binding domain-like | 0 | Direct |
57535,57535,53300 57535 - Complement control module/SCR domain 57535 - Complement control module/SCR domain 53300 - vWA-like | 0 | Direct |
57535,57535,50494 57535 - Complement control module/SCR domain 57535 - Complement control module/SCR domain 50494 - Trypsin-like serine proteases | 0 | Direct |
50494,50156,50156 50494 - Trypsin-like serine proteases 50156 - PDZ domain-like 50156 - PDZ domain-like | 0 | Direct |
52743,49785,57184 52743 - Subtilisin-like 49785 - Galactose-binding domain-like 57184 - Growth factor receptor domain | 0 | Direct |
57630,57184,50494 57630 - GLA-domain 57184 - Growth factor receptor domain 50494 - Trypsin-like serine proteases | 0 | Direct |
57424,57424,50494 57424 - LDL receptor-like module 57424 - LDL receptor-like module 50494 - Trypsin-like serine proteases | 0 | Direct |
57414,57440,57440 57414 - Hairpin loop containing domain-like 57440 - Kringle-like 57440 - Kringle-like | 0 | Direct |
49854,57535,57535 49854 - Spermadhesin, CUB domain 57535 - Complement control module/SCR domain 57535 - Complement control module/SCR domain | 0 | Direct |
57440,57440,50494 57440 - Kringle-like 57440 - Kringle-like 50494 - Trypsin-like serine proteases | 0 | Direct |
49854,57424,56487 49854 - Spermadhesin, CUB domain 57424 - LDL receptor-like module 56487 - SRCR-like | 0 | Direct |
57630,57196,50494 57630 - GLA-domain 57196 - EGF/Laminin 50494 - Trypsin-like serine proteases | 0 | Direct |
57196,57196,50494 57196 - EGF/Laminin 57196 - EGF/Laminin 50494 - Trypsin-like serine proteases | 0 | Direct |
57535,53300,50494 57535 - Complement control module/SCR domain 53300 - vWA-like 50494 - Trypsin-like serine proteases | 0 | Direct |
82671,57424,49854 82671 - SEA domain 57424 - LDL receptor-like module 49854 - Spermadhesin, CUB domain | 0 | Direct |
49854,57196,49854 49854 - Spermadhesin, CUB domain 57196 - EGF/Laminin 49854 - Spermadhesin, CUB domain | 0.00000001813 | Direct |
57535,57535,57535 57535 - Complement control module/SCR domain 57535 - Complement control module/SCR domain 57535 - Complement control module/SCR domain | 0.00000061 | Direct |
57440,57440,57440 57440 - Kringle-like 57440 - Kringle-like 57440 - Kringle-like | 0.07249 | Inherited |
Plot distribution on phylogenetic tree for Individual Supra-domains annotated by this EC term
 |
Plot tree as:
| |
Download Newick format tree:
|
(show help)
Trees by TreeVector
A presence/absence matrix is generated using protein domains and supradomains
for all genomes in SUPERFAMILY. The RAxML
software is used to produce a single, large tree topology using
heuristic parsimony methods. Genome combinations, or specific clades, can be displayed as
if individual trees had been produced. However, this data is extracted from the single
large tree. This produces a higher quality topology than if the trees had been produced
on their own, and allows the trees to be displayed instantly.
|