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Metalloendopeptidases
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Enzyme Commission (EC)
Each enzyme is allocated a four-digit EC number, the first three digits of which define the reaction catalysed and the fourth of which is a unique identifier (serial number). Each enzyme is also assigned a systematic name that uniquely defines the reaction catalysed. To navigate hierarchical structure of EC, we display all parental EC terms to the current EC term of interest ordered by their shortest distances to the current term. Also, only direct children EC terms of the current EC term are listed.
Structural Classification of Proteins (SCOP)
SCOP classifies evolutionary-related domains into Superfamily level and Family level. Accordingly, we have generated the domain-centric EC annotations for each of the three concepts at each of the two domain levels.
Structural Domain Enzyme Commission Ontology (SDEO)
As domain-centric ontology, SDEO only refers to those EC terms which are the most informative to annotate SCOP domains.
EC annotations for SCOP domains
For details, please visit Documentation: EC annotations for SCOP domains. Therein, we provide several relevant files ( Data Availability) for the download, including an annotation file (i.e., Domain2EC.txt) and the corresponding ontology (i.e., SDEO.txt).
Supra-domain Enzyme Commission Ontology (SPEO)
As an extension, SPEO includes those EC terms which are the most informative to annotate supra-domains and individual SCOP domains at the Superfamily level.
EC annotations for Supra-domains
For details, please visit Documentation: EC annotations for Supra-domains. Therein, we provide several relevant files ( Data Availability) for the download, including a annotation file (i.e., SP2EC.txt) and an ontology (i.e., SPEO.txt). For the sake of being browsable, listed below are those supra-domains (single, dual, triple, quad).
Jump to [ Top · EC Hierarchy · Superfamily · Family · Supra-domain ]
Root: EC Hierarchy (from IntEnz release 70)
Jump to [ Top · EC Hierarchy · Superfamily · Family · Supra-domain ]
Superfamily(show details)
Superfamily domains annotated to this EC term (SDEO level: Informative)
Highlighted in gray are those with FDR_all>0.001
Jump to [ Top · EC Hierarchy · Superfamily · Family · Supra-domain ]
Family(show details)
Family domains annotated to this (SDEO level: Informative)
Highlighted in gray are those with FDR_all>0.001
SCOP term |
FDR (all) |
Annotation (direct or inherited) |
Serralysin-like metalloprotease, C-terminal domain | 0 | DIRECT |
Serralysin-like metalloprotease, catalytic (N-terminal) domain | 0 | DIRECT |
Clostridium neurotoxins, the second last domain | 0 | DIRECT |
TNF-alpha converting enzyme, TACE, catalytic domain | 0 | DIRECT |
Hemopexin-like domain | 0 | DIRECT |
Germination protease | 0 | DIRECT |
Peptidoglycan hydrolase LytM | 0 | DIRECT |
Clostridium neurotoxins, C-terminal domain | 0 | DIRECT |
MPP-like | 0 | DIRECT |
MMP N-terminal domain | 0 | DIRECT |
Matrix metalloproteases, catalytic domain | 0 | DIRECT |
Reprolysin-like | 0 | DIRECT |
Thermolysin-like | 0 | DIRECT |
Clostridium neurotoxins, "coiled-coil" domain | 0 | DIRECT |
Astacin | 0 | DIRECT |
TSP-1 type 1 repeat | 0 | DIRECT |
Fungal zinc peptidase | 0 | DIRECT |
Blood coagulation inhibitor (disintegrin) | 0 | DIRECT |
Neurolysin-like | 0 | DIRECT |
Neutral endopeptidase (neprilysin) | 0 | DIRECT |
Clostridium neurotoxins, catalytic domain | 0 | DIRECT |
Leishmanolysin | 0 | DIRECT |
Fibronectin type II module | 0.0000000000116 | DIRECT |
Spermadhesin, CUB domain | 0.0000000002308 | DIRECT |
MAM domain | 0.000001251 | DIRECT |
MATH domain | 0.0001226 | DIRECT |
SCOP term |
FDR (all) |
Annotation (direct or inherited) |
Serralysin-like metalloprotease, C-terminal domain | 0 | Direct |
Serralysin-like metalloprotease, catalytic (N-terminal) domain | 0 | Direct |
Clostridium neurotoxins, the second last domain | 0 | Direct |
TNF-alpha converting enzyme, TACE, catalytic domain | 0 | Direct |
Hemopexin-like domain | 0 | Direct |
Germination protease | 0 | Direct |
Peptidoglycan hydrolase LytM | 0 | Direct |
Clostridium neurotoxins, C-terminal domain | 0 | Direct |
MPP-like | 0 | Direct |
MMP N-terminal domain | 0 | Direct |
Matrix metalloproteases, catalytic domain | 0 | Direct |
Reprolysin-like | 0 | Direct |
Thermolysin-like | 0 | Direct |
Clostridium neurotoxins, "coiled-coil" domain | 0 | Direct |
Astacin | 0 | Direct |
TSP-1 type 1 repeat | 0 | Direct |
Fungal zinc peptidase | 0 | Direct |
Blood coagulation inhibitor (disintegrin) | 0 | Direct |
Neurolysin-like | 0 | Direct |
Neutral endopeptidase (neprilysin) | 0 | Direct |
Clostridium neurotoxins, catalytic domain | 0 | Direct |
Leishmanolysin | 0 | Direct |
Fibronectin type II module | 0.0000000000116 | Direct |
Spermadhesin, CUB domain | 0.0000000002308 | Direct |
MAM domain | 0.000001251 | Direct |
MATH domain | 0.0001226 | Direct |
Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this EC term
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Download Newick format tree:
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Trees by TreeVector
A presence/absence matrix is generated using protein domains and supradomains
for all genomes in SUPERFAMILY. The RAxML
software is used to produce a single, large tree topology using
heuristic parsimony methods. Genome combinations, or specific clades, can be displayed as
if individual trees had been produced. However, this data is extracted from the single
large tree. This produces a higher quality topology than if the trees had been produced
on their own, and allows the trees to be displayed instantly.
Jump to [ Top · EC Hierarchy · Superfamily · Family · Supra-domain ]
Supra-domain (including individual superfamily)
(show details)
(show details)
Supra-domains annotated to this EC term (SPEO level: Informative)
Highlighted in gray are those with FDR>0.001
Supra-domain (Duplex) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
47090,55486 47090 - PGBD-like 55486 - Metalloproteases ("zincins"), catalytic domain | 0 | DIRECT |
58091,49899 58091 - Clostridium neurotoxins, "coiled-coil" domain 49899 - Concanavalin A-like lectins/glucanases | 0 | DIRECT |
49899,50386 49899 - Concanavalin A-like lectins/glucanases 50386 - STI-like | 0 | DIRECT |
55486,82895 55486 - Metalloproteases ("zincins"), catalytic domain 82895 - TSP-1 type 1 repeat | 0 | DIRECT |
55486,49899 55486 - Metalloproteases ("zincins"), catalytic domain 49899 - Concanavalin A-like lectins/glucanases | 0 | DIRECT |
55486,50923 55486 - Metalloproteases ("zincins"), catalytic domain 50923 - Hemopexin-like domain | 0 | DIRECT |
55486,51120 55486 - Metalloproteases ("zincins"), catalytic domain 51120 - beta-Roll | 0 | DIRECT |
82895,82895 82895 - TSP-1 type 1 repeat 82895 - TSP-1 type 1 repeat | 0 | DIRECT |
63411,63411 63411 - LuxS/MPP-like metallohydrolase 63411 - LuxS/MPP-like metallohydrolase | 0 | DIRECT |
55486,57552 55486 - Metalloproteases ("zincins"), catalytic domain 57552 - Blood coagulation inhibitor (disintegrin) | 0 | DIRECT |
49854,82895 49854 - Spermadhesin, CUB domain 82895 - TSP-1 type 1 repeat | 0 | DIRECT |
55486,58091 55486 - Metalloproteases ("zincins"), catalytic domain 58091 - Clostridium neurotoxins, "coiled-coil" domain | 0 | DIRECT |
55486,49854 55486 - Metalloproteases ("zincins"), catalytic domain 49854 - Spermadhesin, CUB domain | 0 | DIRECT |
55486,57440 55486 - Metalloproteases ("zincins"), catalytic domain 57440 - Kringle-like | 0 | DIRECT |
49899,49599 49899 - Concanavalin A-like lectins/glucanases 49599 - TRAF domain-like | 0 | DIRECT |
57440,57440 57440 - Kringle-like 57440 - Kringle-like | 0.0000004023 | DIRECT |
49854,49854 49854 - Spermadhesin, CUB domain 49854 - Spermadhesin, CUB domain | 0.00005913 | DIRECT |
Supra-domain (Duplex) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
47090,55486 47090 - PGBD-like 55486 - Metalloproteases ("zincins"), catalytic domain | 0 | Direct |
58091,49899 58091 - Clostridium neurotoxins, "coiled-coil" domain 49899 - Concanavalin A-like lectins/glucanases | 0 | Direct |
49899,50386 49899 - Concanavalin A-like lectins/glucanases 50386 - STI-like | 0 | Direct |
55486,82895 55486 - Metalloproteases ("zincins"), catalytic domain 82895 - TSP-1 type 1 repeat | 0 | Direct |
55486,49899 55486 - Metalloproteases ("zincins"), catalytic domain 49899 - Concanavalin A-like lectins/glucanases | 0 | Direct |
55486,50923 55486 - Metalloproteases ("zincins"), catalytic domain 50923 - Hemopexin-like domain | 0 | Direct |
55486,51120 55486 - Metalloproteases ("zincins"), catalytic domain 51120 - beta-Roll | 0 | Direct |
82895,82895 82895 - TSP-1 type 1 repeat 82895 - TSP-1 type 1 repeat | 0 | Direct |
63411,63411 63411 - LuxS/MPP-like metallohydrolase 63411 - LuxS/MPP-like metallohydrolase | 0 | Direct |
55486,57552 55486 - Metalloproteases ("zincins"), catalytic domain 57552 - Blood coagulation inhibitor (disintegrin) | 0 | Direct |
49854,82895 49854 - Spermadhesin, CUB domain 82895 - TSP-1 type 1 repeat | 0 | Direct |
55486,58091 55486 - Metalloproteases ("zincins"), catalytic domain 58091 - Clostridium neurotoxins, "coiled-coil" domain | 0 | Direct |
55486,49854 55486 - Metalloproteases ("zincins"), catalytic domain 49854 - Spermadhesin, CUB domain | 0 | Direct |
55486,57440 55486 - Metalloproteases ("zincins"), catalytic domain 57440 - Kringle-like | 0 | Direct |
49899,49599 49899 - Concanavalin A-like lectins/glucanases 49599 - TRAF domain-like | 0 | Direct |
57440,57440 57440 - Kringle-like 57440 - Kringle-like | 0.0000004023 | Direct |
49854,49854 49854 - Spermadhesin, CUB domain 49854 - Spermadhesin, CUB domain | 0.00005913 | Direct |
(show details)
Supra-domains annotated to this EC term (SPEO level: Informative)
Highlighted in gray are those with FDR>0.001
Supra-domain (Triple) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
47090,55486,57440 47090 - PGBD-like 55486 - Metalloproteases ("zincins"), catalytic domain 57440 - Kringle-like | 0 | DIRECT |
55486,58091,49899 55486 - Metalloproteases ("zincins"), catalytic domain 58091 - Clostridium neurotoxins, "coiled-coil" domain 49899 - Concanavalin A-like lectins/glucanases | 0 | DIRECT |
55486,49899,49599 55486 - Metalloproteases ("zincins"), catalytic domain 49899 - Concanavalin A-like lectins/glucanases 49599 - TRAF domain-like | 0 | DIRECT |
63411,63411,63411 63411 - LuxS/MPP-like metallohydrolase 63411 - LuxS/MPP-like metallohydrolase 63411 - LuxS/MPP-like metallohydrolase | 0 | DIRECT |
47090,55486,50923 47090 - PGBD-like 55486 - Metalloproteases ("zincins"), catalytic domain 50923 - Hemopexin-like domain | 0 | DIRECT |
82895,82895,82895 82895 - TSP-1 type 1 repeat 82895 - TSP-1 type 1 repeat 82895 - TSP-1 type 1 repeat | 0 | DIRECT |
58091,49899,50386 58091 - Clostridium neurotoxins, "coiled-coil" domain 49899 - Concanavalin A-like lectins/glucanases 50386 - STI-like | 0 | DIRECT |
55486,49854,49854 55486 - Metalloproteases ("zincins"), catalytic domain 49854 - Spermadhesin, CUB domain 49854 - Spermadhesin, CUB domain | 0 | DIRECT |
55486,57440,57440 55486 - Metalloproteases ("zincins"), catalytic domain 57440 - Kringle-like 57440 - Kringle-like | 0 | DIRECT |
55486,49854,82895 55486 - Metalloproteases ("zincins"), catalytic domain 49854 - Spermadhesin, CUB domain 82895 - TSP-1 type 1 repeat | 0 | DIRECT |
57440,57440,57440 57440 - Kringle-like 57440 - Kringle-like 57440 - Kringle-like | 0.0000000005229 | DIRECT |
Supra-domain (Triple) in N- to C-terminal order |
FDR (all) |
Annotation (direct or inherited) |
47090,55486,57440 47090 - PGBD-like 55486 - Metalloproteases ("zincins"), catalytic domain 57440 - Kringle-like | 0 | Direct |
55486,58091,49899 55486 - Metalloproteases ("zincins"), catalytic domain 58091 - Clostridium neurotoxins, "coiled-coil" domain 49899 - Concanavalin A-like lectins/glucanases | 0 | Direct |
55486,49899,49599 55486 - Metalloproteases ("zincins"), catalytic domain 49899 - Concanavalin A-like lectins/glucanases 49599 - TRAF domain-like | 0 | Direct |
63411,63411,63411 63411 - LuxS/MPP-like metallohydrolase 63411 - LuxS/MPP-like metallohydrolase 63411 - LuxS/MPP-like metallohydrolase | 0 | Direct |
47090,55486,50923 47090 - PGBD-like 55486 - Metalloproteases ("zincins"), catalytic domain 50923 - Hemopexin-like domain | 0 | Direct |
82895,82895,82895 82895 - TSP-1 type 1 repeat 82895 - TSP-1 type 1 repeat 82895 - TSP-1 type 1 repeat | 0 | Direct |
58091,49899,50386 58091 - Clostridium neurotoxins, "coiled-coil" domain 49899 - Concanavalin A-like lectins/glucanases 50386 - STI-like | 0 | Direct |
55486,49854,49854 55486 - Metalloproteases ("zincins"), catalytic domain 49854 - Spermadhesin, CUB domain 49854 - Spermadhesin, CUB domain | 0 | Direct |
55486,57440,57440 55486 - Metalloproteases ("zincins"), catalytic domain 57440 - Kringle-like 57440 - Kringle-like | 0 | Direct |
55486,49854,82895 55486 - Metalloproteases ("zincins"), catalytic domain 49854 - Spermadhesin, CUB domain 82895 - TSP-1 type 1 repeat | 0 | Direct |
57440,57440,57440 57440 - Kringle-like 57440 - Kringle-like 57440 - Kringle-like | 0.0000000005229 | Direct |
Plot distribution on phylogenetic tree for Individual Supra-domains annotated by this EC term
 |
Plot tree as:
| |
Download Newick format tree:
|
(show help)
Trees by TreeVector
A presence/absence matrix is generated using protein domains and supradomains
for all genomes in SUPERFAMILY. The RAxML
software is used to produce a single, large tree topology using
heuristic parsimony methods. Genome combinations, or specific clades, can be displayed as
if individual trees had been produced. However, this data is extracted from the single
large tree. This produces a higher quality topology than if the trees had been produced
on their own, and allows the trees to be displayed instantly.
|