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  Home > Genomes > Superfamily assignments for Staphylothermus marinus F1


Staphylothermus marinus F1 superfamily assignments

Taxonomy
Taxonomy browser entry

Archaea; TACK group; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Staphylothermus; Staphylothermus marinus; Staphylothermus marinus F1

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Fasta format sequences
Domain assignments

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Assignment statistics

Sequences: 1573 total
1008 (64 %) with assignment
289 average length
60 % amino acid coverage
Domains: 1339 total
446 unique superfamilies
217 unique families
272 average length
3 average superfamily size
67 % formed by duplication
Domain combinations: 201 domain pairs
581 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies
126 111 33 7 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
38 38 15 1 SCOP 46785 "Winged helix" DNA-binding domain
33 31 9 6 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
27 27 5 0 SCOP 102114 Radical SAM enzymes
21 20 4 1 SCOP 161098 MetI-like
21 21 13 6 SCOP 51735 NAD(P)-binding Rossmann-fold domains
19 19 11 3 SCOP 50249 Nucleic acid-binding proteins
14 14 10 3 SCOP 52374 Nucleotidylyl transferase
14 12 5 1 SCOP 53850 Periplasmic binding protein-like II
13 13 11 2 SCOP 55681 Class II aaRS and biotin synthetases
12 12 2 4 SCOP 53383 PLP-dependent transferases
12 12 5 0 SCOP 54862 4Fe-4S ferredoxins
11 11 6 2 SCOP 51556 Metallo-dependent hydrolases
11 11 4 1 SCOP 56300 Metallo-dependent phosphatases
11 11 4 4 SCOP 56281 Metallo-hydrolase/oxidoreductase
11 6 6 0 SCOP 54631 CBS-domain pair
11 4 3 0 SCOP 53738 Phosphoglucomutase, first 3 domains
10 10 5 0 SCOP 51905 FAD/NAD(P)-binding domain
10 10 3 1 SCOP 56784 HAD-like
10 10 1 0 SCOP 103473 MFS general substrate transporter
10 10 5 1 SCOP 52402 Adenine nucleotide alpha hydrolases-like
10 10 8 3 SCOP 54211 Ribosomal protein S5 domain 2-like
10 10 3 4 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
9 9 4 0 SCOP 53448 Nucleotide-diphospho-sugar transferases
9 9 1 0 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
9 9 7 2 SCOP 50447 Translation proteins
9 9 3 0 SCOP 81301 Nucleotidyltransferase
9 8 5 0 SCOP 51338 Composite domain of metallo-dependent hydrolases
8 7 4 1 SCOP 52833 Thioredoxin-like
8 7 4 0 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
8 8 5 1 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
8 8 4 1 SCOP 88723 PIN domain-like
7 6 4 1 SCOP 53271 PRTase-like
7 7 3 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
7 7 4 2 SCOP 53187 Zn-dependent exopeptidases
7 7 6 1 SCOP 88713 Glycoside hydrolase/deacetylase
7 7 7 1 SCOP 88697 PUA domain-like
7 6 5 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
6 6 5 3 SCOP 56059 Glutathione synthetase ATP-binding domain-like
6 6 1 0 SCOP 57829 Zn-binding ribosomal proteins
6 6 4 0 SCOP 56112 Protein kinase-like (PK-like)
6 6 4 2 SCOP 50104 Translation proteins SH3-like domain
6 6 3 1 SCOP 47240 Ferritin-like
6 6 4 0 SCOP 109755 PhoU-like
6 6 4 0 SCOP 50182 Sm-like ribonucleoproteins
6 6 3 1 SCOP 109604 HD-domain/PDEase-like
6 4 3 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
6 3 1 0 SCOP 55979 DNA clamp
6 4 3 1 SCOP 52210 Succinyl-CoA synthetase domains
5 4 4 1 SCOP 52317 Class I glutamine amidotransferase-like
5 5 3 2 SCOP 53613 Ribokinase-like
5 5 1 0 SCOP 64182 DHH phosphoesterases
5 5 3 1 SCOP 100950 NagB/RpiA/CoA transferase-like
5 5 1 0 SCOP 54285 MoaD/ThiS
5 5 4 0 SCOP 53649 Alkaline phosphatase-like
5 5 5 0 SCOP 52954 Class II aaRS ABD-related
5 5 2 0 SCOP 54909 Dimeric alpha+beta barrel
5 5 2 0 SCOP 47598 Ribbon-helix-helix
5 5 4 0 SCOP 57783 Zinc beta-ribbon
5 5 4 0 SCOP 55021 ACT-like
5 5 1 0 SCOP 50331 MOP-like
4 4 1 1 SCOP 53167 Purine and uridine phosphorylases
4 4 2 2 SCOP 53697 SIS domain
4 4 2 1 SCOP 51366 Ribulose-phoshate binding barrel
4 4 4 1 SCOP 53137 Translational machinery components
4 4 4 1 SCOP 55120 Pseudouridine synthase
4 3 2 1 SCOP 53067 Actin-like ATPase domain
4 4 3 0 SCOP 89447 AbrB/MazE/MraZ-like
4 4 2 2 SCOP 75217 alpha/beta knot
4 4 3 0 SCOP 52980 Restriction endonuclease-like
4 4 2 0 SCOP 51161 Trimeric LpxA-like enzymes
4 4 2 1 SCOP 111283 Putative modulator of DNA gyrase, PmbA/TldD
4 4 4 0 SCOP 48150 DNA-glycosylase
4 3 3 1 SCOP 52096 ClpP/crotonase
4 4 2 1 SCOP 51395 FMN-linked oxidoreductases
4 4 3 1 SCOP 55315 L30e-like
4 4 3 3 SCOP 51445 (Trans)glycosidases
4 4 4 0 SCOP 47413 lambda repressor-like DNA-binding domains
4 4 2 0 SCOP 53300 vWA-like
4 4 4 1 SCOP 53218 Molybdenum cofactor biosynthesis proteins
4 3 3 0 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
4 4 2 0 SCOP 53323 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
4 4 1 0 SCOP 81593 Nucleotidyltransferase substrate binding subunit/domain
4 4 3 0 SCOP 143437 THUMP domain-like
4 4 3 0 SCOP 52922 TK C-terminal domain-like
4 3 2 0 SCOP 116726 TrkA C-terminal domain-like
4 4 1 1 SCOP 53671 Aspartate/ornithine carbamoyltransferase
4 2 1 1 SCOP 47954 Cyclin-like
3 3 2 0 SCOP 53474 alpha/beta-Hydrolases
3 3 2 2 SCOP 51569 Aldolase
3 2 2 0 SCOP 54197 HIT-like
3 3 2 1 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
3 3 1 2 SCOP 55282 RL5-like
3 3 2 2 SCOP 53098 Ribonuclease H-like
3 3 1 0 SCOP 51695 PLC-like phosphodiesterases
3 3 2 1 SCOP 50129 GroES-like
3 3 1 2 SCOP 53633 Carbamate kinase-like
3 3 1 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
3 3 2 2 SCOP 55821 YrdC/RibB
3 3 1 0 SCOP 56770 HydA/Nqo6-like
3 2 2 0 SCOP 48452 TPR-like
3 3 3 0 SCOP 54292 2Fe-2S ferredoxin-like
3 3 3 2 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
3 3 3 0 SCOP 46689 Homeodomain-like
3 3 2 0 SCOP 50475 FMN-binding split barrel
3 3 1 1 SCOP 51430 NAD(P)-linked oxidoreductase
3 3 2 0 SCOP 55469 FMN-dependent nitroreductase-like
3 3 2 1 SCOP 56672 DNA/RNA polymerases
3 3 3 0 SCOP 74650 Galactose mutarotase-like
3 3 3 1 SCOP 53639 AraD/HMP-PK domain-like
3 3 1 2 SCOP 52972 ITPase-like
3 3 1 0 SCOP 101960 Stabilizer of iron transporter SufD
3 3 1 1 SCOP 111038 YjbQ-like
3 3 2 0 SCOP 143243 Nqo5-like
3 3 3 1 SCOP 51230 Single hybrid motif
3 3 2 1 SCOP 56762 HydB/Nqo4-like
3 3 2 1 SCOP 52467 DHS-like NAD/FAD-binding domain
3 3 1 0 SCOP 82689 Mechanosensitive channel protein MscS (YggB), C-terminal domain
3 2 2 0 SCOP 53901 Thiolase-like
3 3 3 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
3 2 2 0 SCOP 54980 EF-G C-terminal domain-like
3 2 2 0 SCOP 49344 CBD9-like
3 2 2 1 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
3 3 1 1 SCOP 56042 PurM C-terminal domain-like
3 3 2 1 SCOP 48310 Aldehyde ferredoxin oxidoreductase, C-terminal domains
3 3 1 1 SCOP 55326 PurM N-terminal domain-like
3 3 3 1 SCOP 63882 MoeA N-terminal region -like
3 3 1 0 SCOP 82861 Mechanosensitive channel protein MscS (YggB), transmembrane region
3 3 3 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
3 3 2 0 SCOP 55957 Phosphoglucomutase, C-terminal domain
3 3 3 0 SCOP 88688 Families 57/38 glycoside transferase middle domain
3 3 2 1 SCOP 56228 Aldehyde ferredoxin oxidoreductase, N-terminal domain
2 2 2 0 SCOP 111331 NAD kinase/diacylglycerol kinase-like
2 2 1 0 SCOP 52080 Ribosomal proteins L15p and L18e
2 2 2 1 SCOP 55920 Creatinase/aminopeptidase
2 2 2 0 SCOP 46946 S13-like H2TH domain
2 2 2 0 SCOP 52218 Flavoproteins
2 2 2 0 SCOP 110324 Ribosomal L27 protein-like
2 2 1 0 SCOP 51658 Xylose isomerase-like
2 2 2 0 SCOP 55174 Alpha-L RNA-binding motif
2 2 1 1 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
2 1 1 0 SCOP 81333 F1F0 ATP synthase subunit C
2 2 1 0 SCOP 51283 dUTPase-like
2 2 1 0 SCOP 55811 Nudix
2 2 1 0 SCOP 56276 S-adenosylmethionine decarboxylase
2 2 1 1 SCOP 81345 ABC transporter involved in vitamin B12 uptake, BtuC
2 2 1 0 SCOP 52121 Lumazine synthase
2 2 1 1 SCOP 56796 Dehydroquinate synthase-like
2 2 2 0 SCOP 49764 HSP20-like chaperones
2 2 2 0 SCOP 52949 Macro domain-like
2 2 1 0 SCOP 46579 Prefoldin
2 2 1 0 SCOP 52499 Isochorismatase-like hydrolases
2 2 1 0 SCOP 63393 RNA polymerase subunits
2 2 1 0 SCOP 56317 Carbon-nitrogen hydrolase
2 2 2 1 SCOP 110849 ParB/Sulfiredoxin
2 2 1 0 SCOP 49777 PEBP-like
2 2 2 0 SCOP 55257 RBP11-like subunits of RNA polymerase
2 2 1 2 SCOP 52768 Arginase/deacetylase
2 2 1 1 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
2 2 2 2 SCOP 55931 Glutamine synthetase/guanido kinase
2 2 1 0 SCOP 51998 PFL-like glycyl radical enzymes
2 1 1 0 SCOP 46955 Putative DNA-binding domain
2 2 1 0 SCOP 53807 "Helical backbone" metal receptor
2 2 1 0 SCOP 89550 PHP domain-like
2 2 1 0 SCOP 50692 ADC-like
2 2 2 1 SCOP 52507 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
2 2 2 0 SCOP 53822 Periplasmic binding protein-like I
2 1 1 0 SCOP 116734 DNA methylase specificity domain
2 2 1 1 SCOP 117396 TM1631-like
2 2 2 0 SCOP 50998 Quinoprotein alcohol dehydrogenase-like
2 2 2 0 SCOP 57802 Rubredoxin-like
2 2 2 0 SCOP 52242 Cobalamin (vitamin B12)-binding domain
2 2 1 0 SCOP 159659 Cgl1923-like
2 2 1 0 SCOP 53146 Nitrogenase accessory factor-like
2 2 1 2 SCOP 51604 Enolase C-terminal domain-like
2 2 2 0 SCOP 75005 Arabinanase/levansucrase/invertase
2 2 2 1 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
2 2 2 1 SCOP 56726 DNA topoisomerase IV, alpha subunit
2 2 1 1 SCOP 82704 AlbA-like
2 2 2 0 SCOP 55186 ThrRS/AlaRS common domain
2 2 2 0 SCOP 63867 MoeA C-terminal domain-like
2 2 1 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
2 2 1 0 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
2 2 2 0 SCOP 52743 Subtilisin-like
2 2 1 1 SCOP 48592 GroEL equatorial domain-like
2 2 2 0 SCOP 81665 Calcium ATPase, transmembrane domain M
2 1 1 0 SCOP 161093 MgtE membrane domain-like
2 2 1 2 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
2 2 2 0 SCOP 51294 Hedgehog/intein (Hint) domain
2 2 1 1 SCOP 54826 Enolase N-terminal domain-like
2 2 1 1 SCOP 52029 GroEL apical domain-like
2 2 2 0 SCOP 55060 GHMP Kinase, C-terminal domain
2 2 2 1 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
2 2 2 0 SCOP 141322 NfeD domain-like
2 1 1 1 SCOP 55945 TATA-box binding protein-like
2 2 1 0 SCOP 54373 FAD-linked reductases, C-terminal domain
2 1 1 0 SCOP 56053 Ribosomal protein L6
2 2 2 0 SCOP 117892 Band 7/SPFH domain
2 2 1 0 SCOP 55031 Bacterial exopeptidase dimerisation domain
2 2 2 1 SCOP 56542 Substrate-binding domain of HMG-CoA reductase
2 2 1 0 SCOP 81271 TGS-like
2 2 2 0 SCOP 81653 Calcium ATPase, transduction domain A
2 2 1 1 SCOP 55666 Ribonuclease PH domain 2-like
2 2 2 0 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 1 0 SCOP 54849 GroEL-intermediate domain like
2 2 2 0 SCOP 88802 Pre-PUA domain
2 2 1 0 SCOP 54585 Cdc48 domain 2-like
1 1 1 0 SCOP 53927 Cytidine deaminase-like
1 1 1 1 SCOP 53790 Tetrapyrrole methylase
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 1 SCOP 52141 Uracil-DNA glycosylase-like
1 1 1 0 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54570 Ribosomal protein S19
1 1 1 0 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 1 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 0 SCOP 53597 Dihydrofolate reductase-like
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 0 SCOP 82649 SufE/NifU
1 1 1 1 SCOP 50324 Inorganic pyrophosphatase
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 0 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 0 SCOP 51730 FAD-linked oxidoreductase
1 1 1 1 SCOP 53720 ALDH-like
1 1 1 1 SCOP 51713 tRNA-guanine transglycosylase
1 1 1 0 SCOP 50715 Ribosomal protein L25-like
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 1 SCOP 64005 Undecaprenyl diphosphate synthase
1 1 1 0 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
1 1 1 0 SCOP 56655 Carbohydrate phosphatase
1 1 1 1 SCOP 55205 EPT/RTPC-like
1 1 1 0 SCOP 48576 Terpenoid synthases
1 1 1 0 SCOP 55129 Ribosomal protein L30p/L7e
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 0 SCOP 51419 PLP-binding barrel
1 1 1 0 SCOP 56988 Anthrax protective antigen
1 1 1 1 SCOP 48140 Ribosomal protein L19 (L19e)
1 1 1 0 SCOP 52042 Ribosomal protein L32e
1 1 1 1 SCOP 48613 Heme oxygenase-like
1 1 1 0 SCOP 81296 E set domains
1 1 1 0 SCOP 54575 Ribosomal protein L31e
1 1 1 0 SCOP 52799 (Phosphotyrosine protein) phosphatases II
1 1 1 0 SCOP 51726 UROD/MetE-like
1 1 1 0 SCOP 103456 Preprotein translocase SecE subunit
1 1 1 0 SCOP 48317 Acid phosphatase/Vanadium-dependent haloperoxidase
1 1 1 0 SCOP 54534 FKBP-like
1 1 1 0 SCOP 54001 Cysteine proteinases
1 1 1 1 SCOP 111278 SSo0622-like
1 1 1 0 SCOP 159468 AtpF-like
1 1 1 0 SCOP 55144 LigT-like
1 1 1 0 SCOP 69572 Activating enzymes of the ubiquitin-like proteins
1 1 1 0 SCOP 144210 Nop10-like SnoRNP
1 1 1 0 SCOP 89895 FYSH domain
1 1 1 1 SCOP 53774 Glutaminase/Asparaginase
1 1 1 0 SCOP 51306 LexA/Signal peptidase
1 1 1 0 SCOP 51182 RmlC-like cupins
1 1 1 0 SCOP 47819 HRDC-like
1 1 1 0 SCOP 48662 Ribosomal protein L39e
1 1 1 1 SCOP 54919 Nucleoside diphosphate kinase, NDK
1 1 1 0 SCOP 111126 Ligand-binding domain in the NO signalling and Golgi transport
1 1 1 0 SCOP 53032 tRNA-intron endonuclease catalytic domain-like
1 1 1 1 SCOP 64153 YjeF N-terminal domain-like
1 1 1 0 SCOP 55159 eIF1-like
1 1 1 1 SCOP 56399 ADP-ribosylation
1 1 1 0 SCOP 58113 Apolipoprotein A-I
1 1 1 0 SCOP 46924 RNA polymerase subunit RPB10
1 1 1 1 SCOP 143447 AMMECR1-like
1 1 1 1 SCOP 55909 Pentein
1 1 1 0 SCOP 63562 RPB6/omega subunit-like
1 1 1 0 SCOP 144091 Rhomboid-like
1 1 1 1 SCOP 55040 Molybdenum cofactor biosynthesis protein C, MoaC
1 1 1 0 SCOP 69118 AhpD-like
1 1 1 0 SCOP 102405 MCP/YpsA-like
1 1 1 0 SCOP 81324 Voltage-gated potassium channels
1 1 1 0 SCOP 51717 Dihydropteroate synthetase-like
1 1 1 0 SCOP 53795 PEP carboxykinase-like
1 1 1 0 SCOP 118196 YaeB-like
1 1 1 0 SCOP 52016 LeuD/IlvD-like
1 1 1 1 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
1 1 1 0 SCOP 75712 Rad50 coiled-coil Zn hook
1 1 1 0 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
1 1 1 0 SCOP 56524 Oxidoreductase molybdopterin-binding domain
1 1 1 0 SCOP 56349 DNA breaking-rejoining enzymes
1 1 1 0 SCOP 103256 Hypothetical protein TM0160
1 1 1 0 SCOP 46767 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
1 1 1 0 SCOP 101744 Rof/RNase P subunit-like
1 1 1 0 SCOP 117782 YbjQ-like
1 1 1 0 SCOP 55154 CYTH-like phosphatases
1 1 1 0 SCOP 81340 Clc chloride channel
1 1 1 0 SCOP 161111 Cation efflux protein transmembrane domain-like
1 1 1 1 SCOP 54913 GlnB-like
1 1 1 0 SCOP 102215 Creatininase
1 1 1 0 SCOP 50800 PK beta-barrel domain-like
1 1 1 0 SCOP 117856 AF0104/ALDC/Ptd012-like
1 1 1 0 SCOP 69796 Thymidylate synthase-complementing protein Thy1
1 1 1 0 SCOP 49879 SMAD/FHA domain
1 1 1 1 SCOP 103365 Hypothetical protein PH1602
1 1 1 0 SCOP 54975 Acylphosphatase/BLUF domain-like
1 1 1 0 SCOP 158997 Trm112p-like
1 1 1 1 SCOP 82544 GckA/TtuD-like
1 1 1 0 SCOP 53213 LigB-like
1 1 1 1 SCOP 144052 Thermophilic metalloprotease-like
1 1 1 0 SCOP 89095 GatB/YqeY motif
1 1 1 1 SCOP 118215 Proton glutamate symport protein
1 1 1 0 SCOP 102588 LmbE-like
1 1 1 0 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
1 1 1 1 SCOP 103025 Folate-binding domain
1 1 1 0 SCOP 101386 all-alpha NTP pyrophosphatases
1 1 1 1 SCOP 56747 Prim-pol domain
1 1 1 0 SCOP 159234 FomD-like
1 1 1 0 SCOP 55785 PYP-like sensor domain (PAS domain)
1 1 1 0 SCOP 143430 TTP0101/SSO1404-like
1 1 1 0 SCOP 50037 C-terminal domain of transcriptional repressors
1 1 1 1 SCOP 161070 SNF-like
1 1 1 0 SCOP 53182 Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
1 1 1 0 SCOP 69786 YggU-like
1 1 1 0 SCOP 53163 HybD-like
1 1 1 0 SCOP 159127 HupF/HypC-like
1 1 1 0 SCOP 75471 YhbY-like
1 1 1 0 SCOP 103501 Respiratory nitrate reductase 1 gamma chain
1 1 1 0 SCOP 47781 RuvA domain 2-like
1 1 1 0 SCOP 82171 DPP6 N-terminal domain-like
1 1 1 1 SCOP 63992 Dipeptide transport protein
1 1 1 0 SCOP 46950 Double-stranded DNA-binding domain
1 1 1 0 SCOP 74784 Translin
1 1 1 0 SCOP 50346 PRC-barrel domain
1 1 1 1 SCOP 89124 Nop domain
1 1 1 1 SCOP 111321 AF1104-like
1 1 1 1 SCOP 142535 AF0625-like
1 1 1 1 SCOP 111249 Sulfolobus fructose-1,6-bisphosphatase-like
1 1 1 0 SCOP 158436 Ta0600-like
1 1 1 1 SCOP 160975 AF1531-like
1 1 1 0 SCOP 160350 Rnp2-like
1 1 1 0 SCOP 49367 Superoxide reductase-like
1 1 1 0 SCOP 54984 eEF-1beta-like
1 1 1 0 SCOP 46548 alpha-helical ferredoxin
1 1 1 0 SCOP 160980 SSO1389-like
1 1 1 0 SCOP 69819 MTH1598-like
1 1 1 0 SCOP 55287 RPB5-like RNA polymerase subunit
1 1 1 0 SCOP 102891 Hypothetical protein Ta1206
1 1 1 0 SCOP 116820 Rps17e-like
1 1 1 0 SCOP 160374 RplX-like
1 1 1 1 SCOP 102462 Peptidyl-tRNA hydrolase II
1 1 1 0 SCOP 158372 AF1782-like
1 1 1 0 SCOP 69695 SRP19
1 1 1 0 SCOP 160363 MTH889-like
1 1 1 0 SCOP 110455 Toprim domain
1 1 1 1 SCOP 103165 Ta1353-like
1 1 1 0 SCOP 53092 Creatinase/prolidase N-terminal domain
1 1 1 0 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
1 1 1 0 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
1 1 1 1 SCOP 56003 Molybdenum cofactor-binding domain
1 1 1 0 SCOP 46589 tRNA-binding arm
1 1 1 0 SCOP 143865 CorA soluble domain-like
1 1 1 0 SCOP 50156 PDZ domain-like
1 1 1 0 SCOP 53706 Formate dehydrogenase/DMSO reductase, domains 1-3
1 1 1 1 SCOP 51690 Nicotinate/Quinolinate PRTase C-terminal domain-like
1 1 1 0 SCOP 51246 Rudiment single hybrid motif
1 1 1 0 SCOP 69318 Integrin alpha N-terminal domain
1 1 1 0 SCOP 56176 FAD-binding/transporter-associated domain-like
1 1 1 0 SCOP 159713 Dhaf3308-like
1 1 1 0 SCOP 55608 Homing endonucleases
1 1 1 0 SCOP 82114 Riboflavin kinase-like
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 0 SCOP 69304 Tricorn protease N-terminal domain
1 1 1 1 SCOP 102645 CoaB-like
1 1 1 1 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
1 1 1 0 SCOP 58104 Methyl-accepting chemotaxis protein (MCP) signaling domain
1 1 1 0 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 48019 post-AAA+ oligomerization domain-like
1 1 1 0 SCOP 81573 F1F0 ATP synthase subunit B, membrane domain
1 1 1 0 SCOP 52935 PK C-terminal domain-like
1 1 1 0 SCOP 52009 Phosphohistidine domain
1 1 1 0 SCOP 51971 Nucleotide-binding domain
1 1 1 0 SCOP 49265 Fibronectin type III
1 1 1 1 SCOP 52440 PreATP-grasp domain
1 1 1 0 SCOP 82679 N-utilization substance G protein NusG, N-terminal domain
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 0 SCOP 49373 Invasin/intimin cell-adhesion fragments
1 1 1 0 SCOP 56037 PheT/TilS domain
1 1 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
1 1 1 0 SCOP 143968 UbiD C-terminal domain-like
1 1 1 0 SCOP 89915 DNA-binding protein Tfx
1 1 1 0 SCOP 54665 CO dehydrogenase molybdoprotein N-domain-like
1 1 1 0 SCOP 160148 CPE0013-like
1 1 1 0 SCOP 47979 Iron-dependent repressor protein, dimerization domain
1 1 1 0 SCOP 57825 Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
1 1 1 0 SCOP 63380 Riboflavin synthase domain-like
1 1 1 0 SCOP 55447 CO dehydrogenase flavoprotein C-terminal domain-like
1 1 1 0 SCOP 160964 MalF N-terminal region-like
1 1 1 0 SCOP 81631 PAP/OAS1 substrate-binding domain
1 1 1 0 SCOP 144083 Magnesium transport protein CorA, transmembrane region
1 1 1 0 SCOP 46934 UBA-like
1 1 1 1 SCOP 56327 LDH C-terminal domain-like
1 1 1 0 SCOP 75689 Zinc-binding domain of translation initiation factor 2 beta
1 1 1 0 SCOP 100966 Translation initiation factor 2 beta, aIF2beta, N-terminal domain
1 1 1 0 SCOP 54768 dsRNA-binding domain-like
1 1 1 0 SCOP 47794 Rad51 N-terminal domain-like
1 1 1 0 SCOP 47741 CO dehydrogenase ISP C-domain like
1 1 1 1 SCOP 158702 Sec63 N-terminal domain-like
1 1 1 0 SCOP 101852 Bacterial fluorinating enzyme, C-terminal domain
1 1 1 0 SCOP 53743 FucI/AraA N-terminal and middle domains
1 1 1 1 SCOP 54675 Nicotinate/Quinolinate PRTase N-terminal domain-like
1 1 1 1 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
1 1 1 1 SCOP 47446 Signal peptide-binding domain
1 1 1 0 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
1 1 1 0 SCOP 102522 Bacterial fluorinating enzyme, N-terminal domain
1 1 1 0 SCOP 116742 eIF2alpha middle domain-like
1 1 1 0 SCOP 116846 MIT domain
1 1 1 0 SCOP 55481 N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
1 1 1 0 SCOP 88798 N-terminal, heterodimerisation domain of RBP7 (RpoE)
1 1 1 0 SCOP 54368 Glutamine synthetase, N-terminal domain
1 1 1 1 SCOP 55261 GAD domain-like
1 1 1 1 SCOP 51649 RuBisCo, C-terminal domain
1 1 1 1 SCOP 54966 RuBisCO, large subunit, small (N-terminal) domain
1 1 1 0 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 0 SCOP 117018 ATP-dependent DNA ligase DNA-binding domain
1 1 1 0 SCOP 110993 eIF-2-alpha, C-terminal domain
1 1 1 0 SCOP 160527 V-type ATPase subunit E-like
1 1 1 0 SCOP 159065 Dom34/Pelota N-terminal domain-like
1 1 1 1 SCOP 89000 post-HMGL domain-like
1 1 1 1 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 55003 PAP/Archaeal CCA-adding enzyme, C-terminal domain
1 1 1 0 SCOP 64586 C-terminal domain of ProRS
1 1 1 1 SCOP 55035 NAD-binding domain of HMG-CoA reductase
1 1 1 0 SCOP 75445 D-ribose-5-phosphate isomerase (RpiA), lid domain
1 1 1 0 SCOP 101790 Aminomethyltransferase beta-barrel domain
1 1 1 0 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 0 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 0 SCOP 47644 Methionine synthase domain
1 1 1 1 SCOP 101821 Aminopeptidase/glucanase lid domain
1 1 1 1 SCOP 54893 Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain
1 1 1 0 SCOP 109728 Hypothetical protein AF0491, middle domain
1 1 1 0 SCOP 141300 GatD N-terminal domain-like
1 1 1 0 SCOP 140914 PriB N-terminal domain-like
1 1 1 0 SCOP 55267 tRNA-intron endonuclease N-terminal domain-like
1 1 1 0 SCOP 52913 RNA 3'-terminal phosphate cyclase, RPTC, insert domain
1 1 1 0 SCOP 159071 TrmB C-terminal domain-like
1 1 1 1 SCOP 58054 Tetrabrachion

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The following superfamilies have one or more weak hits:

SCOP superfamily Troponin coil-coiled subunits
SCOP superfamily ABC transporter transmembrane region
SCOP superfamily Gametocyte protein Pfg27
SCOP superfamily Multidrug efflux transporter AcrB transmembrane domain
SCOP superfamily beta-sandwich domain of Sec23/24
SCOP superfamily FF domain
SCOP superfamily Cytochrome c oxidase subunit III-like
SCOP superfamily Gated mechanosensitive channel
SCOP superfamily Family A G protein-coupled receptor-like
SCOP superfamily Cullin homology domain
SCOP superfamily Siroheme synthase middle domains-like
SCOP superfamily YhbC-like, N-terminal domain
SCOP superfamily Amidase signature (AS) enzymes
SCOP superfamily HprK N-terminal domain-like
SCOP superfamily Cullin repeat-like
SCOP superfamily TolA/TonB C-terminal domain
SCOP superfamily F1 ATPase inhibitor, IF1, C-terminal domain
SCOP superfamily Prokaryotic ribosomal protein L17
SCOP superfamily Calcium-dependent phosphotriesterase
SCOP superfamily Bacterial hemolysins
SCOP superfamily Clostridium neurotoxins, "coiled-coil" domain
SCOP superfamily Variant surface glycoprotein (N-terminal domain)
SCOP superfamily Fibrinogen coiled-coil and central regions
SCOP superfamily Tropomyosin
SCOP superfamily ArfGap/RecO-like zinc finger
SCOP superfamily RING/U-box
SCOP superfamily Zn2/Cys6 DNA-binding domain
SCOP superfamily Leukocidin-like
SCOP superfamily SAICAR synthase-like
SCOP superfamily HMA, heavy metal-associated domain
SCOP superfamily Ribosomal protein S6
SCOP superfamily Staphylokinase/streptokinase
SCOP superfamily Chromo domain-like
SCOP superfamily beta-carbonic anhydrase, cab
SCOP superfamily Resolvase-like
SCOP superfamily SGNH hydrolase
SCOP superfamily CheY-like
SCOP superfamily L domain-like
SCOP superfamily PA domain
SCOP superfamily Epsilon subunit of F1F0-ATP synthase N-terminal domain
SCOP superfamily Pectin lyase-like
SCOP superfamily Glycosyl hydrolase domain
SCOP superfamily Sialidases
SCOP superfamily Core binding factor beta, CBF
SCOP superfamily Alanine racemase C-terminal domain-like
SCOP superfamily Agglutinin
SCOP superfamily ISP domain
SCOP superfamily TNF-like
SCOP superfamily Galactose-binding domain-like
SCOP superfamily Neurophysin II
SCOP superfamily Cna protein B-type domain
SCOP superfamily Carboxypeptidase regulatory domain-like
SCOP superfamily Diphtheria toxin, C-terminal domain
SCOP superfamily Transglutaminase, two C-terminal domains
SCOP superfamily Tetracyclin repressor-like, C-terminal domain
SCOP superfamily ARM repeat
SCOP superfamily TrpR-like
SCOP superfamily Citrate synthase
SCOP superfamily Chondroitin AC/alginate lyase
SCOP superfamily R1 subunit of ribonucleotide reductase, N-terminal domain
SCOP superfamily DBL homology domain (DH-domain)
SCOP superfamily FliG
SCOP superfamily NusB-like
SCOP superfamily DEATH domain
SCOP superfamily ERP29 C domain-like
SCOP superfamily t-snare proteins
SCOP superfamily EF-hand
SCOP superfamily Viral glycoprotein ectodomain-like
SCOP superfamily BT0923-like
SCOP superfamily EspE N-terminal domain-like
SCOP superfamily EreA/ChaN-like
SCOP superfamily BC4932-like
SCOP superfamily MgtE N-terminal domain-like
SCOP superfamily TAFH domain-like
SCOP superfamily HP0062-like
SCOP superfamily RGC domain-like
SCOP superfamily DUSP-like
SCOP superfamily TROVE domain-like
SCOP superfamily Rabenosyn-5 Rab-binding domain-like
SCOP superfamily Kelch motif
SCOP superfamily Flagellar hook protein flgE
SCOP superfamily LEA14-like
SCOP superfamily Coronavirus S2 glycoprotein
SCOP superfamily Recombination protein RecR
SCOP superfamily Triger factor/SurA peptide-binding domain-like
SCOP superfamily VPS9 domain
SCOP superfamily V-type ATP synthase subunit C
SCOP superfamily Roadblock/LC7 domain
SCOP superfamily JAB1/MPN domain
SCOP superfamily Flavivirus capsid protein C
SCOP superfamily Typo IV secretion system protein TraC
SCOP superfamily Heat shock protein 70kD (HSP70), C-terminal subdomain

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.