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  Home > Genomes > Superfamily assignments for Sorangium cellulosum So0157-2


Sorangium cellulosum So0157-2 superfamily assignments

Taxonomy
Taxonomy browser entry

Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium; Sorangium cellulosum; Sorangium cellulosum So0157-2

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Fasta format sequences
Domain assignments

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Assignment statistics

Sequences: 10400 total
6153 (59 %) with assignment
354 average length
54 % amino acid coverage
Domains: 9723 total
840 unique superfamilies
582 unique families
326 average length
11.6 average superfamily size
91 % formed by duplication
Domain combinations: 766 domain pairs
2078 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies
654 598 160 8 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
299 258 47 9 SCOP 51735 NAD(P)-binding Rossmann-fold domains
262 261 63 2 SCOP 56112 Protein kinase-like (PK-like)
255 188 62 1 SCOP 48452 TPR-like
219 193 40 0 SCOP 46689 Homeodomain-like
211 126 74 0 SCOP 55785 PYP-like sensor domain (PAS domain)
205 189 81 1 SCOP 52172 CheY-like
175 171 95 3 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
160 158 34 7 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
152 151 28 0 SCOP 46785 "Winged helix" DNA-binding domain
142 139 78 0 SCOP 47384 Homodimeric domain of signal transducing histidine kinase
137 135 25 6 SCOP 53474 alpha/beta-Hydrolases
125 104 72 2 SCOP 55781 GAF domain-like
120 116 11 0 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
118 118 14 1 SCOP 53850 Periplasmic binding protein-like II
113 113 10 1 SCOP 88946 Sigma2 domain of RNA polymerase sigma factors
112 106 18 2 SCOP 52833 Thioredoxin-like
92 92 33 0 SCOP 52091 SpoIIaa-like
89 47 35 0 SCOP 47336 ACP-like
89 26 23 1 SCOP 52777 CoA-dependent acyltransferases
77 73 18 3 SCOP 51905 FAD/NAD(P)-binding domain
77 43 23 2 SCOP 53901 Thiolase-like
74 51 26 1 SCOP 46626 Cytochrome c
69 69 9 3 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
67 66 26 7 SCOP 51445 (Trans)glycosidases
67 37 11 0 SCOP 69279 Phage tail proteins
65 65 9 5 SCOP 53383 PLP-dependent transferases
65 43 24 1 SCOP 56801 Acetyl-CoA synthetase-like
59 56 18 0 SCOP 49879 SMAD/FHA domain
58 58 5 1 SCOP 52980 Restriction endonuclease-like
55 27 11 0 SCOP 141571 Pentapeptide repeat-like
54 33 16 2 SCOP 53067 Actin-like ATPase domain
51 51 14 0 SCOP 56300 Metallo-dependent phosphatases
51 50 4 6 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
50 49 6 0 SCOP 103473 MFS general substrate transporter
48 32 26 3 SCOP 50249 Nucleic acid-binding proteins
48 36 17 0 SCOP 69318 Integrin alpha N-terminal domain
47 28 18 1 SCOP 103647 TSP type-3 repeat
44 42 9 1 SCOP 53300 vWA-like
43 43 9 1 SCOP 53822 Periplasmic binding protein-like I
43 43 2 0 SCOP 48498 Tetracyclin repressor-like, C-terminal domain
42 39 6 3 SCOP 54593 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
41 40 7 1 SCOP 161098 MetI-like
41 41 14 5 SCOP 56784 HAD-like
41 37 7 2 SCOP 50129 GroES-like
41 32 12 1 SCOP 48371 ARM repeat
39 31 11 4 SCOP 52096 ClpP/crotonase
38 37 15 2 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
38 38 14 0 SCOP 56935 Porins
38 25 17 1 SCOP 52151 FabD/lysophospholipase-like
37 37 16 2 SCOP 52317 Class I glutamine amidotransferase-like
37 37 9 4 SCOP 51182 RmlC-like cupins
37 36 12 0 SCOP 69255 gp5 N-terminal domain-like
36 36 6 2 SCOP 102114 Radical SAM enzymes
36 36 3 1 SCOP 47616 GST C-terminal domain-like
35 35 3 1 SCOP 48264 Cytochrome P450
35 26 7 0 SCOP 69349 Phage fibre proteins
34 34 10 4 SCOP 53448 Nucleotide-diphospho-sugar transferases
34 33 7 2 SCOP 47240 Ferritin-like
34 33 10 0 SCOP 63829 Calcium-dependent phosphotriesterase
34 29 20 1 SCOP 49785 Galactose-binding domain-like
34 32 11 1 SCOP 54631 CBS-domain pair
34 34 12 0 SCOP 47413 lambda repressor-like DNA-binding domains
34 34 9 1 SCOP 56436 C-type lectin-like
33 31 15 4 SCOP 56059 Glutathione synthetase ATP-binding domain-like
33 33 11 3 SCOP 53098 Ribonuclease H-like
33 30 8 1 SCOP 51126 Pectin lyase-like
33 33 7 0 SCOP 103088 OmpA-like
32 32 9 1 SCOP 81606 PP2C-like
32 30 18 6 SCOP 54211 Ribosomal protein S5 domain 2-like
32 32 10 3 SCOP 49899 Concanavalin A-like lectins/glucanases
32 15 10 1 SCOP 49503 Cupredoxins
31 31 13 1 SCOP 50494 Trypsin-like serine proteases
31 25 14 0 SCOP 50156 PDZ domain-like
30 30 4 1 SCOP 55961 Bet v1-like
30 16 8 1 SCOP 82866 Multidrug efflux transporter AcrB transmembrane domain
29 29 6 1 SCOP 54427 NTF2-like
29 17 14 0 SCOP 55048 Probable ACP-binding domain of malonyl-CoA ACP transacylase
28 28 11 10 SCOP 51556 Metallo-dependent hydrolases
28 28 4 2 SCOP 56281 Metallo-hydrolase/oxidoreductase
28 26 17 2 SCOP 55073 Nucleotide cyclase
28 11 6 0 SCOP 82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
27 16 4 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
26 25 11 2 SCOP 52402 Adenine nucleotide alpha hydrolases-like
26 20 7 1 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
26 25 5 1 SCOP 51430 NAD(P)-linked oxidoreductase
26 26 5 3 SCOP 51197 Clavaminate synthase-like
25 25 9 2 SCOP 56601 beta-lactamase/transpeptidase-like
25 24 13 1 SCOP 75005 Arabinanase/levansucrase/invertase
25 24 9 0 SCOP 101898 NHL repeat
24 24 7 0 SCOP 158472 HAMP domain-like
23 22 9 3 SCOP 81301 Nucleotidyltransferase
23 21 6 3 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
22 16 6 6 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
22 22 8 3 SCOP 53187 Zn-dependent exopeptidases
22 22 8 4 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
22 21 7 1 SCOP 50998 Quinoprotein alcohol dehydrogenase-like
22 22 6 1 SCOP 56645 Acyl-CoA dehydrogenase NM domain-like
22 22 5 1 SCOP 47203 Acyl-CoA dehydrogenase C-terminal domain-like
22 11 6 1 SCOP 82714 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
21 20 14 0 SCOP 51206 cAMP-binding domain-like
21 17 13 0 SCOP 55021 ACT-like
21 14 5 0 SCOP 49742 PHM/PNGase F
20 20 4 6 SCOP 51569 Aldolase
20 20 9 3 SCOP 48208 Six-hairpin glycosidases
20 20 5 0 SCOP 52266 SGNH hydrolase
20 20 2 2 SCOP 54909 Dimeric alpha+beta barrel
20 20 3 1 SCOP 90123 ABC transporter transmembrane region
19 19 10 0 SCOP 74653 TolA/TonB C-terminal domain
18 18 12 4 SCOP 52374 Nucleotidylyl transferase
18 18 4 2 SCOP 53720 ALDH-like
18 18 9 0 SCOP 54862 4Fe-4S ferredoxins
18 18 13 2 SCOP 55681 Class II aaRS and biotin synthetases
18 17 6 1 SCOP 55811 Nudix
18 15 13 0 SCOP 81296 E set domains
18 17 10 1 SCOP 54534 FKBP-like
18 16 8 1 SCOP 48695 Multiheme cytochromes
18 17 15 0 SCOP 82171 DPP6 N-terminal domain-like
17 17 10 2 SCOP 109604 HD-domain/PDEase-like
17 15 5 1 SCOP 111369 HlyD-like secretion proteins
17 9 5 0 SCOP 63411 LuxS/MPP-like metallohydrolase
17 10 6 1 SCOP 56024 Phospholipase D/nuclease
17 16 7 2 SCOP 56176 FAD-binding/transporter-associated domain-like
17 10 8 1 SCOP 117281 Kelch motif
16 15 5 2 SCOP 53271 PRTase-like
16 16 8 3 SCOP 52467 DHS-like NAD/FAD-binding domain
16 16 5 0 SCOP 46894 C-terminal effector domain of the bipartite response regulators
16 10 8 0 SCOP 49452 Starch-binding domain-like
15 15 2 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
15 15 9 0 SCOP 46955 Putative DNA-binding domain
15 15 10 0 SCOP 50969 YVTN repeat-like/Quinoprotein amine dehydrogenase
15 13 4 0 SCOP 63825 YWTD domain
15 5 2 1 SCOP 53738 Phosphoglucomutase, first 3 domains
14 14 2 3 SCOP 51658 Xylose isomerase-like
14 14 10 5 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
14 7 7 1 SCOP 50978 WD40 repeat-like
14 14 7 1 SCOP 56349 DNA breaking-rejoining enzymes
14 13 4 1 SCOP 56219 DNase I-like
14 13 7 1 SCOP 51338 Composite domain of metallo-dependent hydrolases
14 13 12 1 SCOP 50370 Ricin B-like lectins
14 14 4 2 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
13 7 5 0 SCOP 50985 RCC1/BLIP-II
13 12 6 1 SCOP 50475 FMN-binding split barrel
13 13 4 3 SCOP 53649 Alkaline phosphatase-like
13 12 9 2 SCOP 50447 Translation proteins
13 12 7 0 SCOP 50341 CheW-like
13 13 6 1 SCOP 50952 Soluble quinoprotein glucose dehydrogenase
13 13 8 2 SCOP 52743 Subtilisin-like
13 8 5 1 SCOP 58104 Methyl-accepting chemotaxis protein (MCP) signaling domain
13 10 9 0 SCOP 50965 Galactose oxidase, central domain
13 13 11 0 SCOP 49464 Carboxypeptidase regulatory domain-like
13 11 6 1 SCOP 52440 PreATP-grasp domain
12 12 8 4 SCOP 55120 Pseudouridine synthase
12 12 4 3 SCOP 51161 Trimeric LpxA-like enzymes
12 12 3 0 SCOP 88723 PIN domain-like
12 12 9 3 SCOP 88697 PUA domain-like
12 12 11 0 SCOP 52200 Toll/Interleukin receptor TIR domain
12 12 4 1 SCOP 54373 FAD-linked reductases, C-terminal domain
11 11 6 2 SCOP 53927 Cytidine deaminase-like
11 11 4 1 SCOP 51395 FMN-linked oxidoreductases
11 11 11 0 SCOP 47226 Histidine-containing phosphotransfer domain, HPT domain
11 11 6 1 SCOP 54001 Cysteine proteinases
11 11 4 1 SCOP 52499 Isochorismatase-like hydrolases
11 11 5 1 SCOP 88713 Glycoside hydrolase/deacetylase
11 11 11 1 SCOP 53955 Lysozyme-like
11 6 4 1 SCOP 54980 EF-G C-terminal domain-like
11 8 6 1 SCOP 51971 Nucleotide-binding domain
11 1 1 0 SCOP 57552 Blood coagulation inhibitor (disintegrin)
11 11 7 0 SCOP 81653 Calcium ATPase, transduction domain A
10 10 2 1 SCOP 52218 Flavoproteins
10 9 6 3 SCOP 100950 NagB/RpiA/CoA transferase-like
10 9 4 1 SCOP 51316 Mss4-like
10 10 6 0 SCOP 54292 2Fe-2S ferredoxin-like
10 10 6 2 SCOP 56672 DNA/RNA polymerases
10 10 1 2 SCOP 48317 Acid phosphatase/Vanadium-dependent haloperoxidase
10 10 5 0 SCOP 56317 Carbon-nitrogen hydrolase
10 6 5 0 SCOP 52058 L domain-like
10 10 5 0 SCOP 50022 ISP domain
10 8 5 0 SCOP 50974 Nitrous oxide reductase, N-terminal domain
10 10 6 1 SCOP 81665 Calcium ATPase, transmembrane domain M
10 10 7 0 SCOP 51011 Glycosyl hydrolase domain
10 9 6 0 SCOP 63380 Riboflavin synthase domain-like
9 9 2 3 SCOP 53613 Ribokinase-like
9 8 2 4 SCOP 51366 Ribulose-phoshate binding barrel
9 9 3 0 SCOP 69593 Glycerol-3-phosphate (1)-acyltransferase
9 9 5 4 SCOP 48150 DNA-glycosylase
9 7 6 0 SCOP 55469 FMN-dependent nitroreductase-like
9 9 2 1 SCOP 48613 Heme oxygenase-like
9 9 6 4 SCOP 74650 Galactose mutarotase-like
9 8 3 0 SCOP 46458 Globin-like
9 9 6 1 SCOP 51230 Single hybrid motif
9 9 3 2 SCOP 51679 Bacterial luciferase-like
9 9 8 0 SCOP 160246 EspE N-terminal domain-like
9 9 6 0 SCOP 89550 PHP domain-like
9 9 3 1 SCOP 50692 ADC-like
9 9 2 0 SCOP 56954 Outer membrane efflux proteins (OEP)
9 9 4 0 SCOP 158682 TerB-like
9 5 3 0 SCOP 116734 DNA methylase specificity domain
9 9 8 1 SCOP 52242 Cobalamin (vitamin B12)-binding domain
9 8 8 0 SCOP 47781 RuvA domain 2-like
9 9 3 0 SCOP 141371 PilZ domain-like
9 9 7 1 SCOP 52738 Methylesterase CheB, C-terminal domain
9 9 1 0 SCOP 141523 L,D-transpeptidase catalytic domain-like
9 9 3 1 SCOP 53706 Formate dehydrogenase/DMSO reductase, domains 1-3
9 8 4 0 SCOP 69304 Tricorn protease N-terminal domain
9 9 7 1 SCOP 52009 Phosphohistidine domain
9 9 6 0 SCOP 49384 Carbohydrate-binding domain
8 8 2 1 SCOP 53254 Phosphoglycerate mutase-like
8 7 3 2 SCOP 48576 Terpenoid synthases
8 8 5 0 SCOP 50182 Sm-like ribonucleoproteins
8 7 7 0 SCOP 47473 EF-hand
8 8 1 0 SCOP 143422 Transposase IS200-like
8 8 3 0 SCOP 54523 Pili subunits
8 5 5 0 SCOP 81901 HCP-like
8 8 5 0 SCOP 55166 Hedgehog/DD-peptidase
8 8 6 0 SCOP 51004 C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
8 8 5 0 SCOP 46548 alpha-helical ferredoxin
8 5 2 1 SCOP 56003 Molybdenum cofactor-binding domain
8 8 2 3 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
8 6 4 0 SCOP 116726 TrkA C-terminal domain-like
8 8 3 0 SCOP 51215 Regulatory protein AraC
8 8 5 0 SCOP 47090 PGBD-like
8 8 5 2 SCOP 53623 MurD-like peptide ligases, catalytic domain
8 4 4 0 SCOP 100895 Kazal-type serine protease inhibitors
7 7 2 2 SCOP 52141 Uracil-DNA glycosylase-like
7 7 1 0 SCOP 111331 NAD kinase/diacylglycerol kinase-like
7 7 3 1 SCOP 53597 Dihydrofolate reductase-like
7 7 5 1 SCOP 55174 Alpha-L RNA-binding motif
7 7 5 1 SCOP 75217 alpha/beta knot
7 7 6 0 SCOP 109998 Triger factor/SurA peptide-binding domain-like
7 7 5 2 SCOP 53633 Carbamate kinase-like
7 7 6 2 SCOP 55821 YrdC/RibB
7 7 2 2 SCOP 52768 Arginase/deacetylase
7 6 2 1 SCOP 55620 Tetrahydrobiopterin biosynthesis enzymes-like
7 7 5 3 SCOP 55931 Glutamine synthetase/guanido kinase
7 7 2 1 SCOP 69118 AhpD-like
7 7 2 1 SCOP 109854 DinB/YfiT-like putative metalloenzymes
7 7 5 0 SCOP 82689 Mechanosensitive channel protein MscS (YggB), C-terminal domain
7 7 7 1 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
7 7 6 0 SCOP 46565 Chaperone J-domain
7 7 4 1 SCOP 53244 MurD-like peptide ligases, peptide-binding domain
7 7 6 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
7 6 6 0 SCOP 54106 LysM domain
7 7 2 0 SCOP 55060 GHMP Kinase, C-terminal domain
7 6 2 1 SCOP 56042 PurM C-terminal domain-like
7 6 2 1 SCOP 55326 PurM N-terminal domain-like
7 7 5 0 SCOP 47757 Chemotaxis receptor methyltransferase CheR, N-terminal domain
6 6 4 1 SCOP 53790 Tetrapyrrole methylase
6 6 2 1 SCOP 75304 Amidase signature (AS) enzymes
6 6 4 2 SCOP 53697 SIS domain
6 6 4 2 SCOP 50104 Translation proteins SH3-like domain
6 6 4 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
6 6 2 3 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
6 6 5 1 SCOP 51261 Duplicated hybrid motif
6 6 2 1 SCOP 56655 Carbohydrate phosphatase
6 5 4 0 SCOP 110296 Oligoxyloglucan reducing end-specific cellobiohydrolase
6 6 4 1 SCOP 50891 Cyclophilin-like
6 6 3 1 SCOP 56322 ADC synthase
6 6 5 0 SCOP 51306 LexA/Signal peptidase
6 5 4 0 SCOP 55008 HMA, heavy metal-associated domain
6 6 2 3 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
6 6 3 0 SCOP 144091 Rhomboid-like
6 6 3 1 SCOP 55797 PR-1-like
6 6 2 0 SCOP 160719 gpW/gp25-like
6 6 2 0 SCOP 56925 OMPA-like
6 6 2 0 SCOP 50331 MOP-like
6 6 4 0 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
6 6 3 0 SCOP 55103 FAD-linked oxidases, C-terminal domain
6 5 5 0 SCOP 89372 Fucose-specific lectin
6 6 3 1 SCOP 140990 FtsH protease domain-like
6 6 3 1 SCOP 54826 Enolase N-terminal domain-like
6 3 2 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
5 5 1 0 SCOP 57829 Zn-binding ribosomal proteins
5 5 3 1 SCOP 54197 HIT-like
5 5 1 1 SCOP 47729 IHF-like DNA-binding proteins
5 5 1 2 SCOP 48557 L-aspartase-like
5 5 4 0 SCOP 52821 Rhodanese/Cell cycle control phosphatase
5 5 4 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
5 5 1 1 SCOP 55298 YjgF-like
5 5 2 2 SCOP 56796 Dehydroquinate synthase-like
5 5 2 0 SCOP 49764 HSP20-like chaperones
5 4 2 0 SCOP 52799 (Phosphotyrosine protein) phosphatases II
5 5 3 1 SCOP 56634 Heme-dependent catalase-like
5 5 3 1 SCOP 53328 Formyltransferase
5 5 4 1 SCOP 69572 Activating enzymes of the ubiquitin-like proteins
5 4 3 2 SCOP 54506 Diaminopimelate epimerase-like
5 5 3 1 SCOP 82282 Homocysteine S-methyltransferase
5 5 1 1 SCOP 53056 beta-carbonic anhydrase, cab
5 5 2 1 SCOP 56529 FAH
5 5 2 0 SCOP 69635 Type III secretory system chaperone-like
5 5 4 0 SCOP 55718 SCP-like
5 5 4 1 SCOP 52016 LeuD/IlvD-like
5 5 4 0 SCOP 53218 Molybdenum cofactor biosynthesis proteins
5 5 1 1 SCOP 103365 Hypothetical protein PH1602
5 5 2 1 SCOP 117396 TM1631-like
5 4 4 0 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
5 5 3 0 SCOP 75011 3-carboxy-cis,cis-mucoante lactonizing enzyme
5 5 2 2 SCOP 51604 Enolase C-terminal domain-like
5 5 2 1 SCOP 51246 Rudiment single hybrid motif
5 5 4 1 SCOP 56719 Type II DNA topoisomerase
5 5 2 1 SCOP 52922 TK C-terminal domain-like
5 5 5 0 SCOP 74853 Lamin A/C globular tail domain
5 5 4 1 SCOP 52279 Beta-D-glucan exohydrolase, C-terminal domain
5 5 4 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
5 5 3 0 SCOP 47741 CO dehydrogenase ISP C-domain like
5 5 2 0 SCOP 55957 Phosphoglucomutase, C-terminal domain
5 5 1 0 SCOP 55031 Bacterial exopeptidase dimerisation domain
4 4 3 1 SCOP 46946 S13-like H2TH domain
4 3 3 0 SCOP 56214 4'-phosphopantetheinyl transferase
4 4 3 1 SCOP 142695 RibA-like
4 4 2 2 SCOP 55205 EPT/RTPC-like
4 4 3 1 SCOP 51419 PLP-binding barrel
4 4 3 0 SCOP 52949 Macro domain-like
4 4 4 0 SCOP 48239 Terpenoid cyclases/Protein prenyltransferases
4 4 3 1 SCOP 56752 D-aminoacid aminotransferase-like PLP-dependent enzymes
4 4 2 1 SCOP 53639 AraD/HMP-PK domain-like
4 4 1 2 SCOP 52972 ITPase-like
4 4 3 0 SCOP 111126 Ligand-binding domain in the NO signalling and Golgi transport
4 4 3 0 SCOP 52047 RNI-like
4 4 2 1 SCOP 81442 Cytochrome c oxidase subunit I-like
4 4 3 0 SCOP 52954 Class II aaRS ABD-related
4 4 2 1 SCOP 102405 MCP/YpsA-like
4 4 2 0 SCOP 102712 JAB1/MPN domain
4 4 4 0 SCOP 82771 GIY-YIG endonuclease
4 4 1 0 SCOP 53807 "Helical backbone" metal receptor
4 4 4 1 SCOP 46767 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
4 4 4 0 SCOP 50800 PK beta-barrel domain-like
4 4 4 1 SCOP 53732 Aconitase iron-sulfur domain
4 4 3 0 SCOP 89392 Prokaryotic lipoproteins and lipoprotein localization factors
4 4 3 0 SCOP 48295 TrpR-like
4 3 3 2 SCOP 51703 Cobalamin (vitamin B12)-dependent enzymes
4 4 3 0 SCOP 69754 Ribosome binding protein Y (YfiA homologue)
4 4 2 0 SCOP 55136 Probable bacterial effector-binding domain
4 4 3 1 SCOP 102198 Putative cyclase
4 4 3 0 SCOP 160631 SMI1/KNR4-like
4 4 2 1 SCOP 56574 Serpins
4 3 2 1 SCOP 51690 Nicotinate/Quinolinate PRTase C-terminal domain-like
4 3 2 0 SCOP 49695 gamma-Crystallin-like
4 4 2 1 SCOP 81923 Double Clp-N motif
4 4 3 0 SCOP 52129 Caspase-like
4 4 4 0 SCOP 49265 Fibronectin type III
4 4 4 0 SCOP 55816 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
4 2 2 1 SCOP 53681 Aspartate/glutamate racemase
4 4 1 0 SCOP 81660 Metal cation-transporting ATPase, ATP-binding domain N
4 4 2 0 SCOP 63737 Leukotriene A4 hydrolase N-terminal domain
4 4 2 0 SCOP 82861 Mechanosensitive channel protein MscS (YggB), transmembrane region
4 4 4 0 SCOP 47831 Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
4 1 1 0 SCOP 57603 FnI-like domain
4 4 2 0 SCOP 47005 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
3 3 1 1 SCOP 81338 Aquaporin-like
3 3 3 0 SCOP 55594 HPr-like
3 3 2 1 SCOP 53167 Purine and uridine phosphorylases
3 3 1 1 SCOP 56420 Peptide deformylase
3 3 2 1 SCOP 55920 Creatinase/aminopeptidase
3 3 2 1 SCOP 53784 Phosphofructokinase
3 3 1 1 SCOP 75620 Release factor
3 2 2 1 SCOP 109755 PhoU-like
3 3 2 0 SCOP 89360 HesB-like domain
3 3 1 1 SCOP 56770 HydA/Nqo6-like
3 3 1 0 SCOP 54285 MoaD/ThiS
3 3 2 0 SCOP 50685 Barwin-like endoglucanases
3 3 2 1 SCOP 48256 Citrate synthase
3 3 1 1 SCOP 51726 UROD/MetE-like
3 3 2 0 SCOP 55144 LigT-like
3 3 2 0 SCOP 54928 RNA-binding domain, RBD
3 2 2 0 SCOP 47819 HRDC-like
3 3 2 0 SCOP 110849 ParB/Sulfiredoxin
3 3 1 0 SCOP 52788 Phosphotyrosine protein phosphatases I
3 3 2 1 SCOP 51717 Dihydropteroate synthetase-like
3 3 3 2 SCOP 53795 PEP carboxykinase-like
3 3 3 1 SCOP 51998 PFL-like glycyl radical enzymes
3 3 1 0 SCOP 48484 Lipoxigenase
3 3 1 2 SCOP 56266 DmpA/ArgJ-like
3 2 2 0 SCOP 57783 Zinc beta-ribbon
3 3 2 0 SCOP 49482 Aromatic compound dioxygenase
3 3 2 0 SCOP 110857 Gamma-glutamyl cyclotransferase-like
3 3 1 1 SCOP 56762 HydB/Nqo4-like
3 3 3 1 SCOP 159501 EreA/ChaN-like
3 3 2 1 SCOP 50993 Peptidase/esterase 'gauge' domain
3 3 1 0 SCOP 159245 AttH-like
3 3 3 0 SCOP 54975 Acylphosphatase/BLUF domain-like
3 3 2 0 SCOP 48600 Chorismate mutase II
3 2 2 0 SCOP 101386 all-alpha NTP pyrophosphatases
3 3 1 1 SCOP 56821 Prismane protein-like
3 3 1 0 SCOP 51219 TRAP-like
3 3 1 0 SCOP 53041 Resolvase-like
3 3 2 1 SCOP 50486 FMT C-terminal domain-like
3 3 2 0 SCOP 103196 Roadblock/LC7 domain
3 2 2 0 SCOP 81593 Nucleotidyltransferase substrate binding subunit/domain
3 2 2 0 SCOP 50939 Sialidases
3 3 2 0 SCOP 142906 YjbR-like
3 3 1 0 SCOP 160104 Acetoacetate decarboxylase-like
3 3 2 0 SCOP 158791 MgtE N-terminal domain-like
3 3 2 1 SCOP 160582 MbtH-like
3 3 3 1 SCOP 55186 ThrRS/AlaRS common domain
3 3 1 1 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
3 3 1 1 SCOP 48592 GroEL equatorial domain-like
3 1 1 0 SCOP 55979 DNA clamp
3 3 2 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
3 3 2 0 SCOP 160443 SMR domain-like
3 3 2 0 SCOP 48230 Chondroitin AC/alginate lyase
3 3 3 0 SCOP 49344 CBD9-like
3 2 2 0 SCOP 56014 Nitrite and sulphite reductase 4Fe-4S domain-like
3 3 2 1 SCOP 48019 post-AAA+ oligomerization domain-like
3 1 1 1 SCOP 55973 S-adenosylmethionine synthetase
3 3 2 1 SCOP 56037 PheT/TilS domain
3 3 2 1 SCOP 52418 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
3 3 2 1 SCOP 161093 MgtE membrane domain-like
3 3 1 1 SCOP 53671 Aspartate/ornithine carbamoyltransferase
3 3 2 0 SCOP 50621 Alanine racemase C-terminal domain-like
3 3 1 1 SCOP 54719 Fe,Mn superoxide dismutase (SOD), C-terminal domain
3 3 1 1 SCOP 52029 GroEL apical domain-like
3 3 2 0 SCOP 81891 Poly A polymerase C-terminal region-like
3 3 2 1 SCOP 56425 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
3 3 2 1 SCOP 46977 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
3 3 2 0 SCOP 47648 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
3 3 3 0 SCOP 49299 PKD domain
3 3 2 0 SCOP 110921 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
3 3 1 0 SCOP 51984 MurCD N-terminal domain
3 3 3 0 SCOP 53155 Methylated DNA-protein cysteine methyltransferase domain
3 2 2 0 SCOP 54160 Chromo domain-like
3 3 1 0 SCOP 52413 UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
3 3 2 0 SCOP 117892 Band 7/SPFH domain
3 2 2 0 SCOP 55124 Nitrite/Sulfite reductase N-terminal domain-like
3 3 2 0 SCOP 81624 N-terminal domain of MutM-like DNA repair proteins
3 3 2 0 SCOP 54752 RecA protein, C-terminal domain
3 3 2 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
3 3 2 0 SCOP 54675 Nicotinate/Quinolinate PRTase N-terminal domain-like
3 3 3 0 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
3 3 3 0 SCOP 52025 PA domain
3 3 1 1 SCOP 46609 Fe,Mn superoxide dismutase (SOD), N-terminal domain
3 2 2 1 SCOP 55666 Ribonuclease PH domain 2-like
3 3 1 0 SCOP 54849 GroEL-intermediate domain like
3 3 2 1 SCOP 47644 Methionine synthase domain
2 2 2 0 SCOP 48013 NusB-like
2 2 2 1 SCOP 74982 Small protein B (SmpB)
2 2 2 0 SCOP 143597 YojJ-like
2 2 1 0 SCOP 89919 Ribosome-binding factor A, RbfA
2 2 1 1 SCOP 53137 Translational machinery components
2 2 2 1 SCOP 64182 DHH phosphoesterases
2 2 1 0 SCOP 89447 AbrB/MazE/MraZ-like
2 2 1 0 SCOP 143800 L28p-like
2 2 2 1 SCOP 51695 PLC-like phosphodiesterases
2 2 2 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
2 2 2 0 SCOP 51730 FAD-linked oxidoreductase
2 2 2 1 SCOP 111283 Putative modulator of DNA gyrase, PmbA/TldD
2 2 1 1 SCOP 111337 QueA-like
2 2 2 2 SCOP 50715 Ribosomal protein L25-like
2 2 1 0 SCOP 56276 S-adenosylmethionine decarboxylase
2 2 2 1 SCOP 64005 Undecaprenyl diphosphate synthase
2 2 2 0 SCOP 101908 Putative isomerase YbhE
2 2 1 1 SCOP 81345 ABC transporter involved in vitamin B12 uptake, BtuC
2 2 1 0 SCOP 82657 BolA-like
2 2 1 0 SCOP 81452 Cytochrome c oxidase subunit III-like
2 2 1 0 SCOP 56988 Anthrax protective antigen
2 2 2 0 SCOP 54897 Protease propeptides/inhibitors
2 2 1 1 SCOP 49329 Cu,Zn superoxide dismutase-like
2 2 2 0 SCOP 81343 Fumarate reductase respiratory complex transmembrane subunits
2 1 1 1 SCOP 64153 YjeF N-terminal domain-like
2 2 2 0 SCOP 69618 HemD-like
2 2 1 1 SCOP 55909 Pentein
2 2 2 1 SCOP 53800 Chelatase
2 2 2 1 SCOP 81342 Transmembrane di-heme cytochromes
2 2 2 0 SCOP 101478 ADP-ribosylglycohydrolase
2 2 1 1 SCOP 111038 YjbQ-like
2 2 1 1 SCOP 143243 Nqo5-like
2 2 1 1 SCOP 64438 CNF1/YfiH-like putative cysteine hydrolases
2 2 2 0 SCOP 47598 Ribbon-helix-helix
2 2 1 1 SCOP 118196 YaeB-like
2 2 2 1 SCOP 52255 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
2 2 1 1 SCOP 111352 Ammonium transporter
2 2 1 0 SCOP 55331 Tautomerase/MIF
2 2 2 0 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
2 2 2 1 SCOP 56524 Oxidoreductase molybdopterin-binding domain
2 2 1 1 SCOP 143990 YbiA-like
2 2 1 1 SCOP 81340 Clc chloride channel
2 2 2 1 SCOP 161111 Cation efflux protein transmembrane domain-like
2 2 1 1 SCOP 110710 TTHA0583/YokD-like
2 2 2 1 SCOP 54913 GlnB-like
2 2 2 0 SCOP 54736 ClpS-like
2 1 1 0 SCOP 69796 Thymidylate synthase-complementing protein Thy1
2 1 1 0 SCOP 69047 Hypothetical protein YjbJ
2 2 1 0 SCOP 51391 Thiamin phosphate synthase
2 2 2 0 SCOP 89095 GatB/YqeY motif
2 2 1 1 SCOP 118215 Proton glutamate symport protein
2 2 1 1 SCOP 103025 Folate-binding domain
2 2 2 0 SCOP 159888 YdhG-like
2 1 1 0 SCOP 55604 Glucose permease domain IIB
2 2 2 1 SCOP 52335 Methylglyoxal synthase-like
2 2 2 0 SCOP 55804 Phoshotransferase/anion transport protein
2 2 2 0 SCOP 50037 C-terminal domain of transcriptional repressors
2 2 2 0 SCOP 69322 Tricorn protease domain 2
2 2 1 0 SCOP 111384 OmpH-like
2 2 1 1 SCOP 56507 Methionine synthase activation domain-like
2 2 2 1 SCOP 101874 YceI-like
2 2 1 0 SCOP 117070 LEA14-like
2 2 1 0 SCOP 103515 Autotransporter
2 2 1 0 SCOP 103039 CheC-like
2 2 1 0 SCOP 141452 Hcp1-like
2 2 1 0 SCOP 63867 MoeA C-terminal domain-like
2 2 1 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
2 2 1 0 SCOP 46589 tRNA-binding arm
2 2 2 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
2 2 1 0 SCOP 109635 DnaK suppressor protein DksA, alpha-hairpin domain
2 2 2 0 SCOP 47789 C-terminal domain of RNA polymerase alpha subunit
2 2 2 1 SCOP 68923 PEP carboxykinase N-terminal domain
2 2 1 0 SCOP 82679 N-utilization substance G protein NusG, N-terminal domain
2 2 2 1 SCOP 52210 Succinyl-CoA synthetase domains
2 2 2 1 SCOP 81853 Family 10 polysaccharide lyase
2 2 1 1 SCOP 48056 Di-copper centre-containing domain
2 2 2 1 SCOP 48334 DNA repair protein MutS, domain III
2 1 1 0 SCOP 158430 Bacillus cereus metalloprotein-like
2 2 2 0 SCOP 57884 Ada DNA repair protein, N-terminal domain (N-Ada 10)
2 2 2 0 SCOP 52964 TolB, N-terminal domain
2 2 2 0 SCOP 49870 Osmotin, thaumatin-like protein
2 2 1 0 SCOP 54665 CO dehydrogenase molybdoprotein N-domain-like
2 2 1 1 SCOP 101904 GyrA/ParC C-terminal domain-like
2 2 2 0 SCOP 46600 C-terminal UvrC-binding domain of UvrB
2 2 1 0 SCOP 55447 CO dehydrogenase flavoprotein C-terminal domain-like
2 2 2 0 SCOP 160240 Cation efflux protein cytoplasmic domain-like
2 2 1 1 SCOP 56327 LDH C-terminal domain-like
2 2 1 0 SCOP 63418 MurE/MurF N-terminal domain
2 2 2 0 SCOP 47823 lambda integrase-like, N-terminal domain
2 2 1 1 SCOP 63882 MoeA N-terminal region -like
2 2 2 0 SCOP 54768 dsRNA-binding domain-like
2 1 1 0 SCOP 56496 Fibrinogen C-terminal domain-like
2 2 2 0 SCOP 141259 CarD-like
2 1 1 0 SCOP 47794 Rad51 N-terminal domain-like
2 1 1 1 SCOP 56053 Ribosomal protein L6
2 2 2 0 SCOP 55545 beta-N-acetylhexosaminidase-like domain
2 2 2 0 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
2 2 2 1 SCOP 53743 FucI/AraA N-terminal and middle domains
2 2 1 1 SCOP 143975 IlvD/EDD N-terminal domain-like
2 2 2 0 SCOP 159283 Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain
2 2 1 0 SCOP 46557 GreA transcript cleavage protein, N-terminal domain
2 2 2 1 SCOP 81271 TGS-like
2 2 2 0 SCOP 110221 AbfB domain
2 2 1 0 SCOP 49303 beta-Galactosidase/glucuronidase domain
2 2 1 1 SCOP 140864 TROVE domain-like
2 2 1 1 SCOP 54368 Glutamine synthetase, N-terminal domain
2 1 1 0 SCOP 54713 Elongation factor Ts (EF-Ts), dimerisation domain
2 2 2 1 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 1 1 0 SCOP 81886 Helical scaffold and wing domains of SecA
2 2 1 0 SCOP 101790 Aminomethyltransferase beta-barrel domain
2 2 2 0 SCOP 56519 Penicillin binding protein dimerisation domain
1 1 1 1 SCOP 56731 DNA primase core
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 53178 Peptidyl-tRNA hydrolase-like
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 0 SCOP 46911 Ribosomal protein S18
1 1 1 0 SCOP 142433 CinA-like
1 1 1 0 SCOP 82607 YbaB-like
1 1 1 1 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
1 1 1 1 SCOP 54570 Ribosomal protein S19
1 1 1 0 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 55282 RL5-like
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 1 SCOP 52080 Ribosomal proteins L15p and L18e
1 1 1 0 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 0 SCOP 57840 Ribosomal protein L36
1 1 1 0 SCOP 64263 Prokaryotic ribosomal protein L17
1 1 1 0 SCOP 143034 L35p-like
1 1 1 1 SCOP 74731 Ribosomal protein L20
1 1 1 1 SCOP 141091 L21p-like
1 1 1 0 SCOP 110324 Ribosomal L27 protein-like
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 1 SCOP 82549 DAK1/DegV-like
1 1 1 1 SCOP 82649 SufE/NifU
1 1 1 1 SCOP 50324 Inorganic pyrophosphatase
1 1 1 1 SCOP 160369 Ribosomal protein L10-like
1 1 1 0 SCOP 46992 Ribosomal protein S20
1 1 1 1 SCOP 52943 ATP synthase (F1-ATPase), gamma subunit
1 1 1 0 SCOP 81333 F1F0 ATP synthase subunit C
1 1 1 1 SCOP 55068 Peptide methionine sulfoxide reductase
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 1 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 1 SCOP 82784 OsmC-like
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 1 SCOP 55194 Ribosome recycling factor, RRF
1 1 1 0 SCOP 54565 Ribosomal protein S16
1 1 1 1 SCOP 103263 Chorismate synthase, AroC
1 1 1 1 SCOP 51283 dUTPase-like
1 1 1 1 SCOP 51713 tRNA-guanine transglycosylase
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 1 SCOP 102705 NIF3 (NGG1p interacting factor 3)-like
1 1 1 0 SCOP 55229 Cell division protein MinE topological specificity domain
1 1 1 0 SCOP 52304 Type II 3-dehydroquinate dehydratase
1 1 1 1 SCOP 54060 His-Me finger endonucleases
1 1 1 1 SCOP 52121 Lumazine synthase
1 1 1 0 SCOP 55129 Ribosomal protein L30p/L7e
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 0 SCOP 75169 DsrEFH-like
1 1 1 0 SCOP 111148 YggX-like
1 1 1 0 SCOP 54995 Ribosomal protein S6
1 1 1 0 SCOP 55387 Frataxin/Nqo15-like
1 1 1 1 SCOP 56104 SAICAR synthase-like
1 1 1 0 SCOP 55315 L30e-like
1 1 1 1 SCOP 69500 DTD-like
1 1 1 0 SCOP 48403 Ankyrin repeat
1 1 1 0 SCOP 50630 Acid proteases
1 1 1 0 SCOP 55248 PCD-like
1 1 1 1 SCOP 53774 Glutaminase/Asparaginase
1 1 1 0 SCOP 51645 Malate synthase G
1 1 1 0 SCOP 48439 Protein prenylyltransferase
1 1 1 0 SCOP 140959 Indolic compounds 2,3-dioxygenase-like
1 1 1 1 SCOP 54919 Nucleoside diphosphate kinase, NDK
1 1 1 0 SCOP 48113 Heme-dependent peroxidases
1 1 1 0 SCOP 55257 RBP11-like subunits of RNA polymerase
1 1 1 0 SCOP 56399 ADP-ribosylation
1 1 1 0 SCOP 63562 RPB6/omega subunit-like
1 1 1 1 SCOP 63965 Precorrin-8X methylmutase CbiC/CobH
1 1 1 1 SCOP 141734 HisI-like
1 1 1 0 SCOP 81648 a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
1 1 1 0 SCOP 49478 Cna protein B-type domain
1 1 1 1 SCOP 55040 Molybdenum cofactor biosynthesis protein C, MoaC
1 1 1 0 SCOP 81324 Voltage-gated potassium channels
1 1 1 0 SCOP 141868 EAL domain-like
1 1 1 0 SCOP 55724 Mog1p/PsbP-like
1 1 1 0 SCOP 143120 YefM-like
1 1 1 0 SCOP 143011 RelE-like
1 1 1 1 SCOP 142754 NadA-like
1 1 1 0 SCOP 56209 Nitrile hydratase alpha chain
1 1 1 0 SCOP 82697 PurS-like
1 1 1 1 SCOP 55083 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
1 1 1 1 SCOP 89733 L-sulfolactate dehydrogenase-like
1 1 1 1 SCOP 64167 SurE-like
1 1 1 1 SCOP 63892 Pyridoxine 5'-phosphate synthase
1 1 1 0 SCOP 52507 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
1 1 1 0 SCOP 54690 Molybdopterin synthase subunit MoaE
1 1 1 0 SCOP 102215 Creatininase
1 1 1 0 SCOP 141000 Glu-tRNAGln amidotransferase C subunit
1 1 1 0 SCOP 116842 XseB-like
1 1 1 1 SCOP 110399 ThiG-like
1 1 1 0 SCOP 88874 Receptor-binding domain of short tail fibre protein gp12
1 1 1 0 SCOP 50956 Thermostable phytase (3-phytase)
1 1 1 1 SCOP 111304 Recombination protein RecR
1 1 1 0 SCOP 140663 TTHA0068-like
1 1 1 0 SCOP 54518 Tubby C-terminal domain-like
1 1 1 1 SCOP 52733 Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
1 1 1 0 SCOP 69065 RNase III domain-like
1 1 1 0 SCOP 55200 Translation initiation factor IF3, C-terminal domain
1 1 1 0 SCOP 143081 BB1717-like
1 1 1 0 SCOP 103084 Holliday junction resolvase RusA
1 1 1 1 SCOP 82544 GckA/TtuD-like
1 1 1 1 SCOP 53213 LigB-like
1 1 1 0 SCOP 102829 Cell division protein ZapA-like
1 1 1 1 SCOP 143456 VC0467-like
1 1 1 0 SCOP 48173 Cryptochrome/photolyase FAD-binding domain
1 1 1 0 SCOP 52425 Cryptochrome/photolyase, N-terminal domain
1 1 1 1 SCOP 89028 Cobalamin adenosyltransferase-like
1 1 1 0 SCOP 81330 Gated mechanosensitive channel
1 1 1 0 SCOP 49472 Transthyretin (synonym: prealbumin)
1 1 1 1 SCOP 158694 UraD-Like
1 1 1 0 SCOP 110916 Peptidyl-tRNA hydrolase domain-like
1 1 1 0 SCOP 55826 YbaK/ProRS associated domain
1 1 1 0 SCOP 159664 CobE/GbiG C-terminal domain-like
1 1 1 1 SCOP 89796 CoA-transferase family III (CaiB/BaiF)
1 1 1 1 SCOP 110069 ApaG-like
1 1 1 1 SCOP 140478 LemA-like
1 1 1 1 SCOP 110581 Indigoidine synthase A-like
1 1 1 0 SCOP 140931 Fic-like
1 1 1 1 SCOP 143631 ApbE-like
1 1 1 0 SCOP 57802 Rubredoxin-like
1 1 1 0 SCOP 144010 CofE-like
1 1 1 0 SCOP 143430 TTP0101/SSO1404-like
1 1 1 0 SCOP 117457 FumA C-terminal domain-like
1 1 1 0 SCOP 75138 HprK N-terminal domain-like
1 1 1 1 SCOP 142338 CofD-like
1 1 1 1 SCOP 101473 DhaL-like
1 1 1 0 SCOP 53062 PTS system fructose IIA component-like
1 1 1 1 SCOP 111326 Urocanase
1 1 1 0 SCOP 101738 SspB-like
1 1 1 0 SCOP 69786 YggU-like
1 1 1 0 SCOP 53163 HybD-like
1 1 1 0 SCOP 159127 HupF/HypC-like
1 1 1 0 SCOP 82199 SET domain
1 1 1 0 SCOP 75471 YhbY-like
1 1 1 0 SCOP 103501 Respiratory nitrate reductase 1 gamma chain
1 1 1 0 SCOP 160574 BT0923-like
1 1 1 1 SCOP 140736 Rv1873-like
1 1 1 0 SCOP 103007 Hypothetical protein TT1725
1 1 1 0 SCOP 56271 Pyruvoyl-dependent histidine and arginine decarboxylases
1 1 1 0 SCOP 100939 SPOC domain-like
1 1 1 0 SCOP 54626 Chalcone isomerase
1 1 1 0 SCOP 109709 KorB DNA-binding domain-like
1 1 1 1 SCOP 89562 RraA-like
1 1 1 0 SCOP 56726 DNA topoisomerase IV, alpha subunit
1 1 1 0 SCOP 159672 CbiG N-terminal domain-like
1 1 1 1 SCOP 63992 Dipeptide transport protein
1 1 1 1 SCOP 158855 Lipase chaperone-like
1 1 1 0 SCOP 50346 PRC-barrel domain
1 1 1 1 SCOP 52490 Tubulin nucleotide-binding domain-like
1 1 1 0 SCOP 49401 Bacterial adhesins
1 1 1 0 SCOP 56563 Major capsid protein gp5
1 1 1 0 SCOP 53092 Creatinase/prolidase N-terminal domain
1 1 1 0 SCOP 50199 Staphylococcal nuclease
1 1 1 1 SCOP 69864 Argininosuccinate synthetase, C-terminal domain
1 1 1 0 SCOP 48024 N-terminal domain of DnaB helicase
1 1 1 1 SCOP 143865 CorA soluble domain-like
1 1 1 1 SCOP 158832 Tex N-terminal region-like
1 1 1 1 SCOP 69336 Alpha subunit of glutamate synthase, C-terminal domain
1 1 1 0 SCOP 82093 Heme chaperone CcmE
1 1 1 1 SCOP 56512 Nitric oxide (NO) synthase oxygenase domain
1 1 1 0 SCOP 49772 Ecotin, trypsin inhibitor
1 1 1 0 SCOP 82114 Riboflavin kinase-like
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 1 SCOP 160991 CV3147-like
1 1 1 1 SCOP 102645 CoaB-like
1 1 1 0 SCOP 118352 HSP33 redox switch-like
1 1 1 0 SCOP 82185 Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
1 1 1 0 SCOP 143555 FwdE-like
1 1 1 0 SCOP 103190 Sensory domain-like
1 1 1 1 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 55234 Cyanase C-terminal domain
1 1 1 0 SCOP 63848 Cell-division inhibitor MinC, C-terminal domain
1 1 1 0 SCOP 82602 Nuclease A inhibitor (NuiA)
1 1 1 0 SCOP 52935 PK C-terminal domain-like
1 1 1 0 SCOP 160387 NosL/MerB-like
1 1 1 0 SCOP 81995 beta-sandwich domain of Sec23/24
1 1 1 0 SCOP 118116 DNA mismatch repair protein MutL
1 1 1 0 SCOP 81336 F1F0 ATP synthase subunit A
1 1 1 1 SCOP 111342 CbiD-like
1 1 1 0 SCOP 51344 Epsilon subunit of F1F0-ATP synthase N-terminal domain
1 1 1 0 SCOP 90257 Myosin rod fragments
1 1 1 0 SCOP 55658 L9 N-domain-like
1 1 1 0 SCOP 158745 LanC-like
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 0 SCOP 58014 Coiled-coil domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 81464 Cytochrome c oxidase subunit II-like, transmembrane region
1 1 1 1 SCOP 55307 Tubulin C-terminal domain-like
1 1 1 0 SCOP 141673 MOSC N-terminal domain-like
1 1 1 0 SCOP 142984 Nqo1 middle domain-like
1 1 1 0 SCOP 51110 alpha-D-mannose-specific plant lectins
1 1 1 0 SCOP 89260 Collagen-binding domain
1 1 1 0 SCOP 51294 Hedgehog/intein (Hint) domain
1 1 1 0 SCOP 82026 Calcium-mediated lectin
1 1 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
1 1 1 0 SCOP 101967 Adhesin YadA, collagen-binding domain
1 1 1 1 SCOP 52021 Carbamoyl phosphate synthetase, small subunit N-terminal domain
1 1 1 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
1 1 1 0 SCOP 51055 Carbohydrate binding domain
1 1 1 1 SCOP 51989 Glycosyl hydrolases family 6, cellulases
1 1 1 0 SCOP 52075 Outer arm dynein light chain 1
1 1 1 0 SCOP 68912 Rho N-terminal domain-like
1 1 1 1 SCOP 54810 GMP synthetase C-terminal dimerisation domain
1 1 1 0 SCOP 57863 ArfGap/RecO-like zinc finger
1 1 1 1 SCOP 143548 Serine metabolism enzymes domain
1 1 1 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
1 1 1 0 SCOP 51322 Cyanovirin-N
1 1 1 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
1 1 1 0 SCOP 141322 NfeD domain-like
1 1 1 0 SCOP 63446 Type I dockerin domain
1 1 1 0 SCOP 160964 MalF N-terminal region-like
1 1 1 0 SCOP 110997 Sporulation related repeat
1 1 1 0 SCOP 90002 Hypothetical protein YjiA, C-terminal domain
1 1 1 0 SCOP 47144 HSC20 (HSCB), C-terminal oligomerisation domain
1 1 1 0 SCOP 144083 Magnesium transport protein CorA, transmembrane region
1 1 1 0 SCOP 46934 UBA-like
1 1 1 0 SCOP 158544 GspK insert domain-like
1 1 1 0 SCOP 100879 Lesion bypass DNA polymerase (Y-family), little finger domain
1 1 1 0 SCOP 69075 Glutamyl tRNA-reductase dimerization domain
1 1 1 0 SCOP 55945 TATA-box binding protein-like
1 1 1 0 SCOP 52113 BRCT domain
1 1 1 0 SCOP 74942 YhbC-like, C-terminal domain
1 1 1 0 SCOP 75516 Pheromone-binding domain of LuxR-like quorum-sensing transcription factors
1 1 1 0 SCOP 158702 Sec63 N-terminal domain-like
1 1 1 0 SCOP 48435 Bacterial muramidases
1 1 1 0 SCOP 75420 YhbC-like, N-terminal domain
1 1 1 0 SCOP 54782 Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
1 1 1 0 SCOP 140490 Nqo1C-terminal domain-like
1 1 1 0 SCOP 102735 Trigger factor ribosome-binding domain
1 1 1 0 SCOP 54680 Pyrimidine nucleoside phosphorylase C-terminal domain
1 1 1 0 SCOP 89082 Antibiotic binding domain of TipA-like multidrug resistance regulators
1 1 1 1 SCOP 50443 FucI/AraA C-terminal domain-like
1 1 1 0 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
1 1 1 0 SCOP 47446 Signal peptide-binding domain
1 1 1 1 SCOP 56542 Substrate-binding domain of HMG-CoA reductase
1 1 1 0 SCOP 64397 Hsp33 domain
1 1 1 0 SCOP 54991 Anticodon-binding domain of PheRS
1 1 1 0 SCOP 82708 R3H domain
1 1 1 0 SCOP 141986 LD-carboxypeptidase A C-terminal domain-like
1 1 1 1 SCOP 55271 DNA repair protein MutS, domain I
1 1 1 0 SCOP 50934 Tachylectin-2
1 1 1 0 SCOP 69287 Urease metallochaperone UreE, N-terminal domain
1 1 1 0 SCOP 47928 N-terminal domain of the delta subunit of the F1F0-ATP synthase
1 1 1 0 SCOP 48108 Carbamoyl phosphate synthetase, large subunit connection domain
1 1 1 0 SCOP 49410 Alpha-macroglobulin receptor domain
1 1 1 0 SCOP 49562 C2 domain (Calcium/lipid-binding domain, CaLB)
1 1 1 0 SCOP 47874 Annexin
1 1 1 0 SCOP 57362 BPTI-like
1 1 1 1 SCOP 82051 Obg GTP-binding protein N-terminal domain
1 1 1 0 SCOP 143724 PHP14-like
1 1 1 0 SCOP 88688 Families 57/38 glycoside transferase middle domain
1 1 1 0 SCOP 90188 Somatomedin B domain
1 1 1 1 SCOP 142019 Nqo1 FMN-binding domain-like
1 1 1 0 SCOP 55261 GAD domain-like
1 1 1 0 SCOP 57774 Microbial and mitochondrial ADK, insert "zinc finger" domain
1 1 1 1 SCOP 64158 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
1 1 1 0 SCOP 110942 HSP90 C-terminal domain
1 1 1 0 SCOP 49590 PHL pollen allergen
1 1 1 1 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 0 SCOP 117018 ATP-dependent DNA ligase DNA-binding domain
1 1 1 0 SCOP 69742 Glutamyl tRNA-reductase catalytic, N-terminal domain
1 1 1 0 SCOP 75553 Smc hinge domain
1 1 1 0 SCOP 75615 Siroheme synthase middle domains-like
1 1 1 0 SCOP 48168 R1 subunit of ribonucleotide reductase, N-terminal domain
1 1 1 0 SCOP 56194 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
1 1 1 0 SCOP 89000 post-HMGL domain-like
1 1 1 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 64586 C-terminal domain of ProRS
1 1 1 0 SCOP 51064 Head domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 55653 Ribosomal protein L9 C-domain
1 1 1 0 SCOP 55035 NAD-binding domain of HMG-CoA reductase
1 1 1 0 SCOP 75445 D-ribose-5-phosphate isomerase (RpiA), lid domain
1 1 1 0 SCOP 143517 TRCF domain-like
1 1 1 1 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 1 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 0 SCOP 46929 DNA helicase RuvA subunit, C-terminal domain
1 1 1 0 SCOP 160467 PH0987 N-terminal domain-like
1 1 1 0 SCOP 54184 Penicillin-binding protein 2x (pbp-2x), c-terminal domain
1 1 1 0 SCOP 101821 Aminopeptidase/glucanase lid domain
1 1 1 0 SCOP 54364 Translation initiation factor IF3, N-terminal domain
1 1 1 0 SCOP 69705 Transcription factor NusA, N-terminal domain
1 1 1 0 SCOP 53150 DNA repair protein MutS, domain II
1 1 1 1 SCOP 81767 Pre-protein crosslinking domain of SecA
1 1 1 0 SCOP 140356 PPK N-terminal domain-like
1 1 1 0 SCOP 117125 Putative glucosidase YicI, C-terminal domain
1 1 1 0 SCOP 47802 DNA polymerase beta, N-terminal domain-like
1 1 1 0 SCOP 81799 Putative methyltransferase TM0872, insert domain
1 1 1 0 SCOP 69737 Urease metallochaperone UreE, C-terminal domain
1 1 1 0 SCOP 55869 DNA topoisomerase I domain
1 1 1 0 SCOP 46915 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
1 1 1 0 SCOP 140570 MukF C-terminal domain-like
1 1 1 0 SCOP 57770 Methionyl-tRNA synthetase (MetRS), Zn-domain
1 1 1 0 SCOP 52913 RNA 3'-terminal phosphate cyclase, RPTC, insert domain
1 1 1 0 SCOP 117778 D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain

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The following superfamilies have one or more weak hits:

SCOP superfamily Ran binding protein zinc finger-like
SCOP superfamily DPY module
SCOP superfamily Neurotransmitter-gated ion-channel transmembrane pore
SCOP superfamily N-terminal, cytoplasmic domain of anti-sigmaE factor RseA
SCOP superfamily SopE-like GEF domain
SCOP superfamily C-terminal domain of DFF45/ICAD (DFF-C domain)
SCOP superfamily Photosystem I subunits PsaA/PsaB
SCOP superfamily Bacterial photosystem II reaction centre, L and M subunits
SCOP superfamily Mitochondrial cytochrome c oxidase subunit IV
SCOP superfamily Family A G protein-coupled receptor-like
SCOP superfamily H-NS histone-like proteins
SCOP superfamily Rad50 coiled-coil Zn hook
SCOP superfamily Chemotaxis phosphatase CheZ
SCOP superfamily Mitotic arrest deficient-like 1, Mad1
SCOP superfamily Pheromone ER-23
SCOP superfamily OMPT-like
SCOP superfamily SAP domain
SCOP superfamily Phase 1 flagellin
SCOP superfamily SirA-like
SCOP superfamily P-domain of calnexin/calreticulin
SCOP superfamily Flagellar transcriptional activator FlhD
SCOP superfamily PABC (PABP) domain
SCOP superfamily Frizzled cysteine-rich domain
SCOP superfamily RNA polymerase subunits
SCOP superfamily Apolipoprotein A-I
SCOP superfamily Bacterial hemolysins
SCOP superfamily Variant surface glycoprotein (N-terminal domain)
SCOP superfamily SNARE fusion complex
SCOP superfamily Coiled-coil dimerization domain from cortexillin I
SCOP superfamily Tropomyosin
SCOP superfamily Inovirus (filamentous phage) major coat protein
SCOP superfamily Leucine zipper domain
SCOP superfamily Trimerization domain of TRAF
SCOP superfamily FYVE/PHD zinc finger
SCOP superfamily RING/U-box
SCOP superfamily HIV-1 VPU cytoplasmic domain
SCOP superfamily Invertebrate chitin-binding proteins
SCOP superfamily Thyroglobulin type-1 domain
SCOP superfamily TNF receptor-like
SCOP superfamily Complement control module/SCR domain
SCOP superfamily Kringle-like
SCOP superfamily PMP inhibitors
SCOP superfamily Leech antihemostatic proteins
SCOP superfamily EGF/Laminin
SCOP superfamily Growth factor receptor domain
SCOP superfamily omega toxin-like
SCOP superfamily delta-Endotoxin (insectocide), N-terminal domain
SCOP superfamily Prim-pol domain
SCOP superfamily Methenyltetrahydromethanopterin cyclohydrolase
SCOP superfamily Monooxygenase (hydroxylase) regulatory protein
SCOP superfamily Cytochrome b5-like heme/steroid binding domain
SCOP superfamily Subtilisin inhibitor
SCOP superfamily Bactericidal permeability-increasing protein, BPI
SCOP superfamily eIF1-like
SCOP superfamily B12-dependent dehydatase associated subunit
SCOP superfamily N-(deoxy)ribosyltransferase-like
SCOP superfamily Fibre shaft of virus attachment proteins
SCOP superfamily Insect cysteine-rich antifreeze protein
SCOP superfamily Vitelline membrane outer protein-I (VMO-I)
SCOP superfamily TolB, C-terminal domain
SCOP superfamily Oncogene products
SCOP superfamily Lipocalins
SCOP superfamily Actin-crosslinking proteins
SCOP superfamily TIMP-like
SCOP superfamily N-terminal domains of the minor coat protein g3p
SCOP superfamily SH3-domain
SCOP superfamily Neurophysin II
SCOP superfamily alpha-Amylase inhibitor tendamistat
SCOP superfamily Invasin/intimin cell-adhesion fragments
SCOP superfamily Purple acid phosphatase, N-terminal domain
SCOP superfamily Actinoxanthin-like
SCOP superfamily Peridinin-chlorophyll protein
SCOP superfamily Lipovitellin-phosvitin complex, superhelical domain
SCOP superfamily LigA subunit of an aromatic-ring-opening dioxygenase LigAB
SCOP superfamily GntR ligand-binding domain-like
SCOP superfamily Apolipophorin-III
SCOP superfamily t-snare proteins
SCOP superfamily Retrovirus capsid dimerization domain-like
SCOP superfamily 4-helical cytokines
SCOP superfamily alpha-catenin/vinculin-like
SCOP superfamily Hemerythrin-like
SCOP superfamily Cytochromes
SCOP superfamily HMG-box
SCOP superfamily Kix domain of CBP (creb binding protein)
SCOP superfamily Spectrin repeat
SCOP superfamily HR1 repeat
SCOP superfamily Prefoldin
SCOP superfamily PspA lactotransferrin-binding region
SCOP superfamily E6 C-terminal domain-like
SCOP superfamily YfgJ-like
SCOP superfamily SNF-like
SCOP superfamily Photosystem II 10 kDa phosphoprotein PsbH
SCOP superfamily AF1531-like
SCOP superfamily PH0156-like
SCOP superfamily VPA0735-like
SCOP superfamily Jann2411-like
SCOP superfamily MM3350-like
SCOP superfamily YgaC/TfoX-N like
SCOP superfamily Dhaf3308-like
SCOP superfamily XCC0632-like
SCOP superfamily SO1590-like
SCOP superfamily Trm112p-like
SCOP superfamily PSPTO4464-like
SCOP superfamily ENT-like
SCOP superfamily DsbB-like
SCOP superfamily Sec2 N-terminal region
SCOP superfamily Viral leader polypeptide zinc finger
SCOP superfamily NOB1 zinc finger-like
SCOP superfamily ImpE-like
SCOP superfamily FdhE-like
SCOP superfamily YeeU-like
SCOP superfamily ImmE5-like
SCOP superfamily CcmK-like
SCOP superfamily Rv2632c-like
SCOP superfamily CalX-like
SCOP superfamily GUN4-like
SCOP superfamily YoaC-like
SCOP superfamily FlgN-like
SCOP superfamily PE/PPE dimer-like
SCOP superfamily EsxAB dimer-like
SCOP superfamily Vacuolar ATP synthase subunit C
SCOP superfamily AF0104/ALDC/Ptd012-like
SCOP superfamily YbjQ-like
SCOP superfamily GTF2I-like repeat
SCOP superfamily Nucleoporin domain
SCOP superfamily Hypothetical protein PA1324
SCOP superfamily DNA primase DnaG, C-terminal domain
SCOP superfamily DNA-binding domain of EIN3-like
SCOP superfamily Geminin coiled-coil domain
SCOP superfamily Hypothetical protein PF0899
SCOP superfamily CAPPD, an extracellular domain of amyloid beta A4 protein
SCOP superfamily BAR/IMD domain-like
SCOP superfamily Sec-C motif
SCOP superfamily Necrosis inducing protein 1, NIP1
SCOP superfamily Bubble protein
SCOP superfamily MoaD-related protein, C-terminal domain
SCOP superfamily LmbE-like
SCOP superfamily Hypothetical protein YgiW
SCOP superfamily Hydrophobin II, HfbII
SCOP superfamily Dextranase, N-terminal domain
SCOP superfamily Formin homology 2 domain (FH2 domain)
SCOP superfamily Invasion protein A (SipA) , C-terminal actin binding domain
SCOP superfamily Docking domain A of the erythromycin polyketide synthase (DEBS)

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.